LOC110512652 (riiad1)


Basic Information

Item Value
gene id LOC110512652
gene name riiad1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20014592 ~ 20018502 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592906.2
TATTACACTTGACTTGAGTAAAACTAGAAAAGGTCAATTTTctgaagaaaatgtgtgtgctCTATAGTCTACAATAGTGAATAGGAGCGAACACGAATCTCACACATTCTCCATCCATGAGTGTTCTGGTCTCCCTGCATGGGCGTATAGTAGAGACATCTACTCCAGAGGTACTTGCTTAGGTCACAACAACTGATGAGCTGTTTGGGTAATATGGCAGAACTCTCATGTCCTGTGGCTGGATTCCTCAATACAAGCTCTGAAAAACATTGTCACATTGGCTGCCACCCAGAGCCATAGAGACCTACAGAAATGTCATGGGGGAAAGCAAAGATAAACTCTGTGGGAAAAGTGTTGCTTCTGTTCTACTCAGGCTGTTGCCATAGTAACAGTGGGGCTCGTCAACAAAAGGCGATGTTTTGTTTTGGTAAAGATATTAACGGTAGCTAGCAAGCAGGCTATCAAAGGAATATTAGCTAGCTGATGAGATCAAATGGCTGATAAACGTGGTTTAGAGAAACTGGACTTTGGTGCATTAAGCATCGAGCAACAACAGCAACTCCGACAATTTAagATCACTACAAGAATCAACAATGAAAAATATTTGAGAGAGCATCCAGAGACGGAGGCCTTAATAAGCGACTTTTTAAGaGATGTATTTCTCAAAAGACCCACAGACATTCGAGAGTATGCAGCAGATTACTTCACCGACCCAAACCTTGGTTTGATCATTGGCTCCAAACTGCAGGGCGATCCTGCCGACACAGGCACAGACTGAATCCTTACCGGATTGTTTGGCAGTTCAACTGTTATTGAAGTGTAAAGCTGTAACAGGCCTCTTTCTCTGTGTTGTGTACATCCTCTGTATTGACTAGTTATTTGTTGCAAAGTAATGTGATACAAATATAAAACAGGATATAAAGTGGGTATGTACTGGCACCCAGGCAGATGTTCTTACTGAGCATCATTACAACAGGTTAGTTACAGGGCTACAGAAGGATGTTTTATACCGCTGGTTGAGAGGAAAATATTTATAGGCCTATAGGGTGGAGTGGACAGCCTCCTTACAGGAGTTCTCAGGGTAAAGTCTAAACGGGATCATTGGGACATCCCAACTCTGACATTACCCTATTGGAAGTTTAAATATTAAACGGTTAAGGTTACAAGGATTCTCGATAGCACTAACCGCTTTCTCAAGCCTCAGAGTTCCCCCTTCTGGTCTCCCGTTTCCGTTAACTCCCCAACTCAACAAAAAACATTTAAGCAAGATGAGAAAATGTGACAGCAGCAATACTGACCACACAGTTTAAATGTTTAATGACTTTAAAATCATCAAGTAACCAGCGCATCAGGCTTTGCTGTAAAAACATACATAGCGCAGTAAAAACAGGTCAAATCCATCTCACAAAGATGacaaaatcatttaaaattctgTTTGATTCacattttaaaatctgacacgctACAAAAATAGGCACATCTGGTTTAACAATTAAGTGATTGTATAGAGAAGACCCTGAAATTGTATAAAAACCTAGACCCTGATAATATTGGACATTTCAACAGCAGGCCTACGTAATACATTCTGTAACCAACATACTGTGGTAGAGGATGTGAATAGAGCTTTTAAATCCTGAGCAAACAGGCACAAATCATCAATGTTTAGACACGTCAATGTTAAAAGGTAACAGATTTCCTTTTTATATATACAAGTTTGTCAGTAACTTACATTGTTTGATATTTGTTCAGGCAATTGATTGCCCCTCTCTTATGGCTTGTATTGGGCTCCAGGAATCCAGAATTGTATCttagacacagatctaggatcagattacatTATGTAAAATCTTAAACATAATCCTTAGGGAGTAAAACACACAACTGATCTTCTACCAGTGTCTATAGGCAACATCATCCTACTGCCTTGATCTCAGAGTAGTGTACTACTACCAGCCTCCTGACCCTAGAGCCCATCTACATTACACAGTATGATGGAGCTATCAATACACACTGATCTGATCCAAGGTCAGTATTGCGTTATCCCCTAATGGTAATGGTTAGGATTCAAAGAGGGTAAGCTGGCCCTGGATCTGTGCCTATTAAACAatctcacacacatactgtactttaACCACAACATGCAAAGGAGTTTCAACCAACCGCGATACAAGTTAGTGTTGTTTTATGTTGTGTCTGACTTGCACAGCATTTTAACATTAAAGCGGATCCCCCTTTAAAAAACATGATTCCCGTTATTAGAACCCAATACACAACAGTAGGCCTACGTAGTACATTCTGTAACCAACATTCTGTGGTAGAGCATGCTCACTTTAGTACACAATGTAAAATTCTAGATTGGAGAGACTGATTTGAACGGCAATGACTACAACCATCACACACTGCAGCcatcccacagacacacacatccagtGTCCAATGTTTTTCACGTACAAACAAGTTTAGTCCCATACACACTTCCAATGTCTCCGGTCTTCACACAAACATGGCCTGGGACACAAAGCTGTCTCCACGAGATGTTCCAGTGGCAGGGGGGTGGTCCTCCTCTTTGTCATGGTAATCATTGGCCTTGTACTGGTTGGGGGCGTACAGGGGCGGGACTTCGTTCACCCTGGGTTCATCCCAGCCAGGGGGGGCGCCAGCGTAGCGCAACTCCTCCGCATCACGATTGTATTCCTCATCACTGTACGCGTCCAAGTCCTGGTGGGAAAGATAACCATATAAAATCATCTTAATAATCAAGTAAAAATAAGGAGAACCAATGCAGTCTTCATAGTATTCTAGTGACCCTTGCATTAGCGAACAAACTGACAGAGCAACACCCTTTGAGAGTCTTGATCCCAGGTCTTCTAGCCAATGGACAAACTtactaaccactgctccaatagggttAAATCACAGGGCTTACCAAGGCAATGGTTTCTACAGTATTAAAAACACATGTTTCCATCTATAGCATGTTCAGTATATCAGCTTCTATCCACATAGCAGCCCTCCATACCCTTCAGTTTCCTACACGTTCTCATGTTTGTGTACTGGTAAATAGGGCAATCATGTTGAGTAACTGATGAATAAATGATCATAAGTAGATGGTAAA
>TU266553
GCTCGTCAACAAAAGGCGATGTTTTGTTTTGGTAAAGATATTAACGGTAGCTAGCAAGCAGGCTATCAAAGGAATATTAGCTAGCTGATGAGATCAAATGGCTGATAAACGTGGTTTAGAGAAACTGGACTTTGGTGCATTAAGCATCGAGCAACAACAGCAACTCCGACAATTTAagATCACTACAAGAATCAACAATGAAAAATATTTGAGAGAGCATCCAGAGACGGAGGCCTTAATAAGCGACTTTTTAAGaGATGTATTTCTCAAAAGACCCACAGACATTCGAGAGTATGCAGCAGATTACTTCACCGACCCAAACCTTGGTTTGATCATTGGCTCCAAACTGCAGGGCGATCCTGCCGACACAGGCACAGACTGAATCCTTACCGGATTGTTTGGCAGTTCAACTGTTATTGAAGTGTAAAGCTGTAACAGGCCTCTTTCTCTGTGTTGTGTACATCCTCTGTATTGACTAGTTATTTGTTGCAAAGTAATGTGATACAAATATAAAACAGGATATAAAGTGGGTATGTACTGGCACCCAGGCAGATGTTCTTACTGAGCATCATTACAACAGGTTAGTTACAGGGCTACAGAAGGATGTTTTATACCGCTGGTTGAGAGGAAAATATTTATAGGCCTATAGGGTGGAGTGGACAGCCTCCTTACAGGAGTTCTCAGGGTAAAGTCTAAACGGGATCATTGGGACATCCCAACTCTGACATTACCCTATTGGAAGTTTAAATATTAAACGGTTAAGGTTACAAGGATTCTCGATAGCACTAACCGCTTTCTCAAGCCTCAGAGTTCCCCCTTCTGGTCTCCCGTTTCCGTTAACTCCCCAACTCAACAAAAAACATTTAAGCAAGATGAGAAAATGTGACAGCAGCAATACTGACCACACAGTTTAAATGTTTAATGACTTTAAAATCATCAAGTAACCAGCGCATCAGGCTTTGCTGTAAAAACATACATAGCGCAGTAAAAACAGGTCAAATCCATCTCACAAAGATGacaaaatcatttaaaattctgTTTGATTCacattttaaaatctgacacgctACAAAAATAGGCACATCTGGTTTAACAATTAAGTGATTGTATAGAGAAGACCCTGAAATTGTATAAAAACCTAGACCCTGATAATATTGGACATTTCAACAGCAGGCCTACGTAATACATTCTGTAACCAACATACTGTGGTAGAGGATGTGAATAGAGCTTTTAAATCCTGAGCAAACAGGCACAAATCATCAATGTTTAGACACGTCAATGTTAAAAGGTAACAGATTTCCTTTTTATATATACAAGTTTGTCAGTAACTTACATTGTTTGATATTTGTTCAGGCAATTGATTGCCCCTCTCTTATGGCTTGTATTGGGCTCCAGGAATCCAGAATTGTATCttagacacagatctaggatcagattacatTATGTAAAATCTTAAACATAATCCTTAGGGAGTAAAACACACAACTGATCTTCTACCAGTGTCTATAGGCAACATCATCCTACTGCCTTGATCTCAGAGTAGTGTACTACTACCAGCCTCCTGACCCTAGAGCCCATCTACATTACACAGTATGATGGAGCTATCAATACACACTGATCTGATCCAAGGTCAGTATTGCGTTATCCCCTAATGGTAATGGTTAGGATTCAAAGAGGGTAAGCTGGCCCTGGATCTGTGCCTATTAAACAatctcacacacatactgtactttaACCACAACATGCAAAGGAGTTTCAACCAACCGCGATACAAGTTAGTGTTGTTTTATGTTGTGTCTGACTTGCACAGCATTTTAACATTAAAGCGGATCCCCCTTTAAAAAACATGATTCCCGTTATTAGAACCCAATACACAACAGTAGGCCTACGTAGTACATTCTGTAACCAACATTCTGTGGTAGAGCATGCTCACTTTAGTACACAATGTAAAATTCTAGATTGGAGAGACTGATTTGAACGGCAATGACTACAACCATCACACACTGCAGCcatcccacagacacacacatccagtGTCCAATGTTTTTCACGTACAAACAAGTTTAGTCCCATACACACTTCCAA

Function

symbol description
riiad1 Orthologous to human RIIAD1 (regulatory subunit of type II PKA R-subunit domain containing 1).

NR:

description
RIIa domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592906.2 False 3115 mRNA 0.41 4 20014592 20018502
TU266553 True 2085 lncRNA 0.49 4 20015226 20018106

Neighbor

gene id symbol gene type direction distance location
g6f-like-b g6f-like-b coding downstream 82852 19914520 ~ 19931740 (-)
LOC110512609 LOC106579779 coding downstream 118744 19877497 ~ 19895848 (-)
LOC110512516 LOC106579712 coding downstream 163484 19827342 ~ 19851108 (-)
LOC110512480 flot1 coding downstream 229031 19762376 ~ 19785561 (-)
LOC110512409 LOC106605396 coding downstream 347127 19655283 ~ 19667465 (-)
dnah5 LOC106579813 coding upstream 5408 20023910 ~ 20090697 (-)
LOC110512703 LOC106579851 coding upstream 244024 20262526 ~ 20270372 (-)
LOC110512719 LOC106579893 coding upstream 253872 20272374 ~ 20275308 (-)
LOC118944500 NA coding upstream 534251 20552753 ~ 20554867 (-)
LOC110512912 LOC106579937 coding upstream 545146 20563648 ~ 20581532 (-)
G233136 LOC106579633 non-coding downstream 16715 19961733 ~ 19997877 (-)
G233098 NA non-coding downstream 93979 19898441 ~ 19920613 (-)
G233096 LOC106579727 non-coding downstream 142363 19871266 ~ 19872229 (-)
G233064 NA non-coding downstream 150710 19863298 ~ 19863882 (-)
G233090 NA non-coding downstream 162146 19852232 ~ 19852446 (-)
G233366 NA non-coding upstream 331135 20349637 ~ 20349902 (-)
G233430 NA non-coding upstream 417041 20435543 ~ 20444642 (-)
G233457 NA non-coding upstream 452526 20471028 ~ 20474427 (-)
G233460 NA non-coding upstream 462818 20481320 ~ 20481533 (-)
G233472 NA non-coding upstream 478384 20496886 ~ 20497524 (-)
G233052 LOC106605397 other downstream 257974 19756204 ~ 19757908 (-)
G232980 NA other downstream 365963 19648086 ~ 19648629 (-)
rims2a LOC106579570 other downstream 415491 19416054 ~ 19652601 (-)
LOC110511176 LOC106579058 other downstream 732454 19065512 ~ 19282368 (-)
G231652 rn146 other downstream 1412717 18599730 ~ 18601875 (-)
G233513 LOC106561082 other upstream 533281 20551783 ~ 20551997 (-)
glipr2l LOC106605424 other upstream 630269 20648378 ~ 20652052 (-)
G234224 LOC106605437 other upstream 1160095 21178597 ~ 21180682 (-)
LOC110513321 LOC106580205 other upstream 1426986 21438546 ~ 21455972 (-)
G234600 NA other upstream 1451159 21469661 ~ 21469945 (-)

Expression


Co-expression Network