LOC110512703 (LOC106579851)


Basic Information

Item Value
gene id LOC110512703
gene name LOC106579851
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20262526 ~ 20270372 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592920.2
AGTTGCAATCATTGGTACAAAAGAATAGAGTAGACAAAACCTAAGAGTAGTTTCCCGGCCAGACTGTTTCAACCAGCACACACGTTATCACCAGAGGGAGGGTTACAGCATTCAATCTGTACATCAGAAAAGAAGAGATTGGgTAAGATGAATACAACCGAGGCCACTAGCACAGATGATTACAGTGGCGATGACTACAATGGCAGCCCCTGTAGCACTGGCACCAGTCTAACCCAAGGGTCCAACTACCAGCCCATTCTCTTCTACCTGGTGTTCACCCTGGGTCTGACAGGCAACAGTCTGGTGCTCTGGGTCCTCCTCAAGTACATGAAACTGAAGACAATGACAGACATCTGTCTGCTGAACCTAGCCCTATCTGACCTgctcctcgccctctctctgcctctctgggcCTACCACGCCCAGGGTCATGAGTTTGAAGGGAACAGTCCGTGTAAGATCATGGCTGGTGTCTACCAGGTGGGCTTCTACAGCAGCATCCTGTTTGTGACCCTGATGAGTGTGGATCGCTACCTGGCCATCGTTCACGCCGTGGCCGCCATGAGGGCCAGGACGCTGCGCTACGGAGCGCTGGCGAGCATCATCGTCTGGGTAGCCTCCATCGGCGCTGCTCTCCCTGAAGCTATCTTCGCAGCAGAAGTGTGGGAGGATGACGAGGACAGTGGTTCAAGTTGCCAGCGGATTTAcccagagaacacagagaagacATGGAAGTTGTTACGGAACTTTGGTGAAAACGGAGTGGGGCTCGTCCTATGTCTGCCCATAGTGGTCTTTTGTTACATCAGTATTCTCACTGTACTACAGAGGTTAAGGAACTCCAAAAAAGACAGGGCCATGAAACTGATATTCGCCATCGTGGGTGTGTTTGTAGTCTCCTGGGTCCCTTACAACATTGTGGTTTTCCTCCAGACCCTTCAgatgtttgacattgggaataGCTGTGAGGCTTCAACACAGCTTGATAAAGCTATGGAGGTGACAGAGACCATAGCTCTGGCTCACTGCTGTGTCAACCCAGTCATCTACGCTTTTGTAGGAGAGAAATTCAGAAAGTGTTTGGGCACTGTGCTCTCTAGATATCCGCTGTGTAAGAAGCTCAGCAAACATGCAATGGTGAGCAGCAGAGGATCAGAAAACGAGACTTCTAACACAGCTGTGTGATTGTACTGCTGACAGACAATACTTCCACTGCTGAAAACCTGTTTGACACATTTTCATTGAGCAGAAGACCAATTTCTGTTCGTATGGAATAATGAAGTATTCTTCTGAACACAGACTTGCATTTAAATTAAGTGTAACTGTATAATATTgaactttaaatgtattttgatgaGCTCTGACTATTTGTTTAAGGGTGATGGGCTGTTTATGTTTTGATTACCCATGCATGTATTTCATGTACAGTACAGGCCTGCACAAAAGTTTGCTACAGcataatatcaacatgttttgcatAGAGATTATCTCAACTTTTATTCTTATTGTATGCACACATTTTTGTTATAACATTAAAACACAACCAGGGGCAGGGTTGTGGCCAGAGGACTGCTATTGGATGGCCAGTGGCTATCTGGCTACTCATTGGCTACATTTTCTGGCCAAATATTATTTGGGTAGAATTTTGACCGTCCTGTGAATGAGGACGTGTTTTGGTATTAACTTGAACTTGGACTTCGAGGCAAGAATTTTACCTTTTGGATTATTTTGAACTTTTGTTGGCTGAGTAGGTATTTTTGTTCCTTTCTGGAGGGTTTTCTCAATAAATCAACCTGTGAATTTTGTTGTGCTCAAACATATTTGTTCAGCATTGTGTTGTCATTTTATGCTGCTGCTGTACACCCCTATACTCCAGTTTGCTCCACAATATATTTTATTCAGTTGAAGAAGCTAAATTCAAAGATGAGACAGACAACAATCCTGCTACATCAGTAGGTTCAAATCTTCTTTACAGTAGGTTTACTTAGTTGTTTTGATCCAGAAAACTCACATATCAATCTAGTCATCatggaatttatttcaattgttcAAAGACAGGAATTATATCAGCAGTCACCATATTTAGACAATTGAATGCTAGCAATGATGCTAGAACTAATGCATCTCTCAGTCATGACGCAAAATGCGTTCAGTCTTCAGCTAACCACTTCGCAGTAAAGTTAGTTGCTTGAGCAGCTCTATGAGTTTGCATCATCTACAGGATATCCTGCTTGGTGGTGAACATGTCTGCAGCACAGATCAAGCCTTTGGGAGAAGCGACACTCCTCTGTTCAAATAAGATAATACATTCATGATCTTAAAAAAGGTCTACAGTGTTCCATAAACTAAACCTGCAGCATGGATTCCTCCAGCTTCATGTAGTGGTCCAAGCATCCATGATGCACAGGGATGTGCAGGTACAAATGCATTCCGTTTGGATTAAAATCTGTTCTCAGCATAGCAGTAAAGTTTGGCCACATTTACCCCCACACCACCCCCACCAAAGACATCTGTTGGAGAAAATAAACTGCAGACGTAGGTTCCCTTAATAACCCACCTTGTTACGAGTCCCTGCAGGCCCCAGAACTACTGTCACACCAGAGTGTATAACCCTCAGACAGACAACTCAACCCAGATTGACAGGGGAACACCACAACCATTCCCTTCAGCTCTGTGAGTGTTGAGAATGGGAATTCATCCAGTTACTCATATGAGAACTCATCCAGTTATGCATATGAGAACTCATCCAGTTATGCATATGAGAACTCATCCAGTTATGCATATGAGAACTCATCCAGTTATGCATATGGCACACATTTTGCAGACGCAGTTGAAGTACCACATATGACTACAATAACAATGACGATGGCATTTGCAAGTACAAGGCACACGGAGCCAGCTTCCTGCCAGTGCTGTACTCTCTCTTCTTCACCCTGGGGTTTCTGGGGAACGTTCTGGTCCTGTGGGTCATGCTGCTGGGGGTGAGACTACGTAGCATGACCGACGTGTGTCACCTGAACCTGGACTTGGCTGACCTGCTCCTGGTCTGCTCCTTGCCTTTCTTGGCCCACCACGCTAGACACCAGTGGGTGTTTGGTGACATCATGTGCAAAGTGGTCCTCAGCACCTACCACGTTGGCTTCTACAGTGGCATCTTCTTCATCACCCTGATGAGTGTGGACAGGTCCATGCTGTTTACGCCATGAGAGCCAGAACACGTAAGTATGGGGCCATCGCTGTCGTCGTGACCTGGCTGGCTCGATTCCGGGCCTCGTTTCCTGAGGTTCTGTTTCTTAAAGTGGAGAAAAACAATGAGAAAGAAAATTGTCACCCTGTCTATGATGGACACTCTTGGGGATTTTTTGCCCTTTTCAAAATGAACACACTTGTTCTGCTAATCCCCCTCGTCATCATAGGGTTCTGCTACACAGATTGATGGCCTGCTTTTTGGAGGATGGAGTACTGAGCAGCCTTCTGACTCATTCTCATTGTGGTTGTGGTGTTTTTCTGCTGCTGGACTCCGTACAACATGACGTCATTTTTCAAGGCCTTGGAGTTAAGTGAGGTCTACTCAAGCTGTGAGAGTAGCAAAGCCATCAGACTCACTCTACAGATCAGAGGCCATGGCCTACTCCCATAGCTGCCTGAATCCCATCCTCTATGTTTTTGTGGGGCAAAAGTTTAGAAGGCTGATAAGACTGATATAAgtcataagactgataaataagGCTCCCTGCAGGATGTGTCAGTTCATGAAGTACTACCTGCCCCGGGACTTCAGAGCCTCGAGGACAGGATCTATTTACTCACAGACCACCAGCGTGGATGAGAGGTATACTGCCGTGTGAACAGCAACTTAACTGTAAAGACAAATACATCTGACATCACATGTACTGTTCATTCCAAAACATATGTAAATACCAAATCCAGTGTCAAATACAATCATCTGAAAATAATAGGCTCTGATCCAGGTGCATGGCGAAGTCAGGAAATTGTCACTCAACTCAGAGTTTCCCATCAGGGCGTTGATTTTTACAGAAATCAACCCAATCATTATACATTTCACAAACCATTTCATTTCCCTTTGTATAGCATTTTGTCTAGTACCGTATGTCTATTTGAAGTTTTTGGCACATTTTGCAAAGTTCTCTTTTAAAATGTATCTGCTAGCACACATATGTAAATACAGTAATACttttttaattctatgtaaaTAAATGCATCACAGTAACTTCATCCCCTCCTGCACGAGGCAAATTATTACAATTAAAGTACTTCCAAGATAATGTAATCAAGATATACTCAGTGACCTGGATGTTTTCTCTATGTTCCTATGTGTCAGTGCTAGAGAATATGTGAATGATGGTGCCACCACAGACCAATATCGCTTACTTCTGTTAGCAACTTATCTCACCACAAAGAGTGACACTGCTGGTGCCTTACAAAATGTAATCCTATTGTGATTCACTGCAGTATTGTAACATGTTTTATATTGATCATTATAATGGGGATGCAGAAGACATTCAGATTATAACACATTTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592920.2 True 4542 mRNA 0.44 4 20262526 20270372

Neighbor

gene id symbol gene type direction distance location
dnah5 LOC106579813 coding downstream 171829 20023910 ~ 20090697 (-)
LOC110512652 riiad1 coding downstream 244024 20014592 ~ 20018502 (-)
g6f-like-b g6f-like-b coding downstream 330786 19914520 ~ 19931740 (-)
LOC110512609 LOC106579779 coding downstream 366678 19877497 ~ 19895848 (-)
LOC110512516 LOC106579712 coding downstream 411418 19827342 ~ 19851108 (-)
LOC110512719 LOC106579893 coding upstream 2002 20272374 ~ 20275308 (-)
LOC118944500 NA coding upstream 282381 20552753 ~ 20554867 (-)
LOC110512912 LOC106579937 coding upstream 293276 20563648 ~ 20581532 (-)
trnat-ugu-31 NA coding upstream 312908 20583280 ~ 20583352 (-)
LOC110512925 NA coding upstream 320074 20590446 ~ 20595555 (-)
G233136 LOC106579633 non-coding downstream 264649 19961733 ~ 19997877 (-)
G233098 NA non-coding downstream 341913 19898441 ~ 19920613 (-)
G233096 LOC106579727 non-coding downstream 390297 19871266 ~ 19872229 (-)
G233064 NA non-coding downstream 398644 19863298 ~ 19863882 (-)
G233366 NA non-coding upstream 79265 20349637 ~ 20349902 (-)
G233430 NA non-coding upstream 165171 20435543 ~ 20444642 (-)
G233457 NA non-coding upstream 200656 20471028 ~ 20474427 (-)
G233460 NA non-coding upstream 210948 20481320 ~ 20481533 (-)
G233472 NA non-coding upstream 226514 20496886 ~ 20497524 (-)
G233052 LOC106605397 other downstream 505908 19756204 ~ 19757908 (-)
G232980 NA other downstream 613897 19648086 ~ 19648629 (-)
rims2a LOC106579570 other downstream 663425 19416054 ~ 19652601 (-)
LOC110511176 LOC106579058 other downstream 980388 19065512 ~ 19282368 (-)
G231652 rn146 other downstream 1660651 18599730 ~ 18601875 (-)
G233513 LOC106561082 other upstream 281411 20551783 ~ 20551997 (-)
glipr2l LOC106605424 other upstream 378399 20648378 ~ 20652052 (-)
G234224 LOC106605437 other upstream 908225 21178597 ~ 21180682 (-)
LOC110513321 LOC106580205 other upstream 1175116 21438546 ~ 21455972 (-)
G234600 NA other upstream 1199289 21469661 ~ 21469945 (-)

Expression


Co-expression Network