LOC110512719 (LOC106579893)


Basic Information

Item Value
gene id LOC110512719
gene name LOC106579893
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20272374 ~ 20275308 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592921.2
AGGAATGCAGCAGCAGTACTATAGGCTATTGTACATCAGGACAATACATTCATCTTCAAGAGACTCAGAGAAGAAACACCAAagagctaattgatcattaattATACCTGACAAGGATATGGAGCCAACAACAGATTATAACTATTCTGCCTACTACGATGATACAGAACGGTTAGATACATCAGAGGGCCAGCCATGCAACAATGCCAATGTGAAGGAGTTTGGACGGGTGTTTCTGCCTACATTTTACAGCCTGGTCTTCATCGTGGGCGTCATTGGTAACGGCGTGGTGGTCTATGTCCTGGTGAAGTTTAGGAGGACCAGAAGCATGACAGACCTCTGTCTCCTCAATCTGGCACTGTCTGACCTTTTCTTCGTCATCTCCCTGCCTTTCTGGTCCCACTATGCCACCGCAGCCGAGTGGCTCCTGGGGGACTTTATGTGCCGACTGGTAACCGGACTGTACATGCTGGGGTTTTATGGCAGTATCTTCTTCATGATGATCTTGACAGTGGATCGCTATGTGGTCATAGTCCACTCTCACAAAATGGCCAGGCTCAGATCTGTCAGAGTAGGGGTCACTCTGTCTCTGCTCATGTGGGCTCTCAGTCTCTGTGCCTCTCTGCCTACAATCATCTTCACCAAAGTAAATAATGAGTCTGGGCTTACAACATGTAAACCAGAGTATCCAGAGGGTAGCATGTGGCGCCAGGTTTCTTATTTAGAGATGAATGTCTTGggtctacttctccctctctccgtcatgGTGATCTGCTATTGCAGAATCGTTCCGATGTTAGTCAATATCAAAACCTCCAAAAAGCACAAAGCCATCAAACTGATAATCATCATAGTAGTAGTCTTTTTCTGCTTTTGGACCCCATACAATGTGGTCATTCTCCTGCGTTATCTGGAGGAACAAAGCTATTTTGGGGACTGTACAACTCACAAGAACATAGACCTGGCAATGCAGTGGACAGAGGTGATAGCGTTCACACACTGTTGTTTGAATCCGATCATCTATGCCTTTGTAGGGCAGAAATTCATGAGTCTTGTCCTGAAGTTACTAAGAAAATGGATGCCAATGTGCTTCACCAGGCCTAATATTAGTGAGTTGTCTGAACGAAAAAGCTCAGTCTATTCCAGGTCTTCTGAAATAACATCTACAAGATTGATGTAGATTGGCTTGTATACAAGCACAATTCAAATATACAAACTTTGAGAAGGGAAAAGACAGTAAAAGATGAAAGGAAAAACTACAAACAAATGTAAGTAGGATTTCTTTGAAAGTGTGGCCACCCTAGCTGTGAATCTATGCTTACAGaagatacagtagttatcagttGCTCTTTTGTATCTTTACATGCTCCAATTCCTTTGTTGATAGATACCTTTAAAGAGTGTTAGTTGAGTCCTCATGTGGTATTGTGTGAagtgtgaaaaaagttgtaaaaaattgacagtatgtatgtacagtgcattcagaaagtattcagacccctttcctttccttatttacataagtag

Function

NR:

description
PREDICTED: C-C chemokine receptor type 5-like isoform X1

GO: NA

KEGG:

id description
K04179 CCR4, CD194; C-C chemokine receptor type 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592921.2 True 1527 mRNA 0.43 2 20272374 20275308

Neighbor

gene id symbol gene type direction distance location
LOC110512703 LOC106579851 coding downstream 2002 20262526 ~ 20270372 (-)
dnah5 LOC106579813 coding downstream 181677 20023910 ~ 20090697 (-)
LOC110512652 riiad1 coding downstream 253872 20014592 ~ 20018502 (-)
g6f-like-b g6f-like-b coding downstream 340634 19914520 ~ 19931740 (-)
LOC110512609 LOC106579779 coding downstream 376526 19877497 ~ 19895848 (-)
LOC118944500 NA coding upstream 277445 20552753 ~ 20554867 (-)
LOC110512912 LOC106579937 coding upstream 288340 20563648 ~ 20581532 (-)
trnat-ugu-31 NA coding upstream 307972 20583280 ~ 20583352 (-)
LOC110512925 NA coding upstream 315138 20590446 ~ 20595555 (-)
trnat-ugu-32 NA coding upstream 316748 20592056 ~ 20592128 (-)
G233136 LOC106579633 non-coding downstream 274497 19961733 ~ 19997877 (-)
G233098 NA non-coding downstream 351761 19898441 ~ 19920613 (-)
G233096 LOC106579727 non-coding downstream 400145 19871266 ~ 19872229 (-)
G233064 NA non-coding downstream 408492 19863298 ~ 19863882 (-)
G233366 NA non-coding upstream 74329 20349637 ~ 20349902 (-)
G233430 NA non-coding upstream 160235 20435543 ~ 20444642 (-)
G233457 NA non-coding upstream 195720 20471028 ~ 20474427 (-)
G233460 NA non-coding upstream 206012 20481320 ~ 20481533 (-)
G233472 NA non-coding upstream 221578 20496886 ~ 20497524 (-)
G233052 LOC106605397 other downstream 515756 19756204 ~ 19757908 (-)
G232980 NA other downstream 623745 19648086 ~ 19648629 (-)
rims2a LOC106579570 other downstream 673273 19416054 ~ 19652601 (-)
LOC110511176 LOC106579058 other downstream 990236 19065512 ~ 19282368 (-)
G231652 rn146 other downstream 1670499 18599730 ~ 18601875 (-)
G233513 LOC106561082 other upstream 276475 20551783 ~ 20551997 (-)
glipr2l LOC106605424 other upstream 373463 20648378 ~ 20652052 (-)
G234224 LOC106605437 other upstream 903289 21178597 ~ 21180682 (-)
LOC110513321 LOC106580205 other upstream 1170180 21438546 ~ 21455972 (-)
G234600 NA other upstream 1194353 21469661 ~ 21469945 (-)

Expression


Co-expression Network