LOC110512870 (LOC106605416)


Basic Information

Item Value
gene id LOC110512870
gene name LOC106605416
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20446669 ~ 20473526 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971570.1
CTCCTGATGTACACCACTCACTGCTGCGGTGTGTGAAgactgaaagagaggaggacccgACCACGGCTGTGCTCGACAACTTGTACAATGGACGCTACAGAGTTccggaggagagggaaggagatggtaGACCTGATAGCAGATTACCTGGAGAACATAGAGCAGAGGACGGTGTACCCCGACGTGGAGCCTGGGTACCTGCGGTCCCTCATCCCTGAGGAGGCCCCTGAGGAGCCTGACACCTACGAGGACGTGGTCAAAGACATTGAGAGGGTCATCATGCCTGGGGTGACCCACTGGCACAGCCCGTACTTCTATGCCTACTTCCCCACGGCTAACTCCTTCCCGGCCATGCTGGCAGACATGCTGTCTGGAGCTATTGGTTGCATCGGATTCTCCTGGGCTGCCAGCCCAGCTTGTACAGAGCTGGAGACAGTCATGATGGACTGGCTGGGGAAGATGCTCAAGCTGCCAGAGGACTTCATCGCCGGGACACACGGACAAGGAGGAGGCGTCATCCAGGGTACGGCCAGTGAGGCAACTCTTGTGGCTCTCCTAGCTGCCCGCTGCAGGGCGGTCAGAATGATCCTGGCCAGTGACCCACAACGTCCAGAGACTGGCATTACCTCCAAACTGGTGGCCTACTCCTCCGACCAGGCTCATTGCTCGGTGGAACGAGCAGGTATGATTGCCGGAGTGAGGATGAAGAAGATTCCGACGGAGCAGTCAGACAAGTATGCTGTCCAGGGAGAGACCCTCCGGAGAATGATACAGGAAGACAAGGCTGCAGGACTCATCCCCTTCTACTTCTGTGCTACTCTTGGGACCACTCCCTCATGTGCATTTGATCACATTACTGAACTTGGGCCCATAtGTAATGCAGAGAAAATCTGGATGCACATTGATGCTGCATATGCTGGGAGTTCCTTTATCTGTCCTGAATTCAGACCCCTGTTGAACGGCATTGAGTTTGCAGACTCTTTCAATTTCAATGCACACAAATGGCTGTTGGTCAACTTTGACTGCTCTACAATGTGGGTGAAGAAAAGATCTGATCTCATTGGGGCCTTCAAGATGGATCCTCTATACCTGAAACATGATCATCAAGAGTCGGGACTGATCACAGATTACAGGCACTGGCAGATTCCACTGGGCCGACGGTTCCGCTCTCTCAAGATGTGGTTTGTGTTCCGAATGTATGGGCTCAAAGGCCTTCAGGACTACATCCGTAAGCATGTGGAGTTGGCCAAAGAGTTTGAGAGCCTGGTTCGCGCTGACCAGCGCTTTGAGATCAGCGCAGACGTCGTGTTAGGGCTGGTCTGCTTTAGACTAAAGGGTTCCAACGAGGTGAATGAGACCTTGCTGAAGAGGATCAACAATGGCAGGAAGATCCACCTGGTGCCGTGCCTGCTGTCTGGTCAGTTTGTGCTGCGCTTCGCCCTCTGCGCCCGCACCACCGAGTCACGTCACATCCGCGAGGCCTGGCAACTCATCACACAGCTGGCCGAAGAGGTCATGCAGGAGCTGCCCCACTGA
>XM_036971566.1
gccgttttttGTCGGAGTAGAGGgtcttgtgcatttcagTTGTACAATGGACGCTACAGAGTTccggaggagagggaaggagatggtaGACCTGATAGCAGATTACCTGGAGAACATAGAGCAGAGGACGGTGTACCCCGACGTGGAGCCTGGGTACCTGCGGTCCCTCATCCCTGAGGAGGCCCCTGAGGAGCCTGACACCTACGAGGACGTGGTCAAAGACATTGAGAGGGTCATCATGCCTGGGGTGACCCACTGGCACAGCCCGTACTTCTATGCCTACTTCCCCACGGCTAACTCCTTCCCGGCCATGCTGGCAGACATGCTGTCTGGAGCTATTGGTTGCATCGGATTCTCCTGGGCTGCCAGCCCAGCTTGTACAGAGCTGGAGACAGTCATGATGGACTGGCTGGGGAAGATGCTCAAGCTGCCAGAGGACTTCATCGCCGGGACACACGGACAAGGAGGAGGCGTCATCCAGGGTACGGCCAGTGAGGCAACTCTTGTGGCTCTCCTAGCTGCCCGCTGCAGGGCGGTCAGAATGATCCTGGCCAGTGACCCACAACGTCCAGAGACTGGCATTACCTCCAAACTGGTGGCCTACTCCTCCGACCAGGCTCATTGCTCGGTGGAACGAGCAGGTATGATTGCCGGAGTGAGGATGAAGAAGATTCCGACGGAGCAGTCAGACAAGTATGCTGTCCAGGGAGAGACCCTCCGGAGAATGATACAGGAAGACAAGGCTGCAGGACTCATCCCCTTCTACTTCTGTGCTACTCTTGGGACCACTCCCTCATGTGCATTTGATCACATTACTGAACTTGGGCCCATAtGTAATGCAGAGAAAATCTGGATGCACATTGATGCTGCATATGCTGGGAGTTCCTTTATCTGTCCTGAATTCAGACCCCTGTTGAACGGCATTGAGTTTGCAGACTCTTTCAATTTCAATGCACACAAATGGCTGTTGGTCAACTTTGACTGCTCTACAATGTGGGTGAAGAAAAGATCTGATCTCATTGGGGCCTTCAAGATGGATCCTCTATACCTGAAACATGATCATCAAGAGTCGGGACTGATCACAGATTACAGGCACTGGCAGATTCCACTGGGCCGACGGTTCCGCTCTCTCAAGATGTGGTTTGTGTTCCGAATGTATGGGCTCAAAGGCCTTCAGGACTACATCCGTAAGCATGTGGAGTTGGCCAAAGAGTTTGAGAGCCTGGTTCGCGCTGACCAGCGCTTTGAGATCAGCGCAGACGTCGTGTTAGGGCTGGTCTGCTTTAGACTAAAGGGTTCCAACGAGGTGAATGAGACCTTGCTGAAGAGGATCAACAATGGCAGGAAGATCCACCTGGTGCCGTGCCTGCTGTCTGGTCAGTTTGTGCTGCGCTTCGCCCTCTGCGCCCGCACCACCGAGTCACGTCACATCCGCGAGGCCTGGCAACTCATCACACAGCTGGCCGAAGAGGTCATGCAGGAGCTGCCCCACTGACTATCCACATGGACTAGACAGGCTGGGTTGGTCCAGGAGCTGTATGTATCAAGCAGTATTTCAGAGTAAGAGTgcatgtctaggatcaggtcccccctgtccattcattataatctaaaaggctaaactgatcttagaaactgatcttagatcagcactcctactctgagatgcttgatgAATAAGGGCCCTAACCCCACCTGACCATGGCCGGTATTCaaaaagcgtctcagagtaggagtttcCATGTTATCTTATTCCTTATGAagtaaaaggctaaactgatcctagttcAGCACGGTTTGATGCCTACTCTGAGATGCTACAGGCCTGGATCTcactcagtggaggctgctgaggggaggacggctcataataatggctgaaacggagggactggaatggcatcaaaccatgcgtttgacgtatttgataccattccactgactccgataccagtcattaccacgagcccatcctccccaattgaGGTGGCACCAACCTGCTGTGATCTCACTGTGTTTACATCATCAGCAAATTGCAGCCCTTTCTCTCTGCTGTCGGATCCCATGTGTGTATTtatatgtgtgttttgtgtggttGTATGTGAATCAATGAATTTGTGTGGGTGCGCGTGACTAAATTAAAGGTGATTTTTGGGTGAAGCAAATCATATCCAGATGTTAAGGTTTTGCCTGATAAGTTACTGTAGTGTAGGGTTTACTGACAATACACAAGCATGTGTTCTTTGTAAAACCAGACAGACTGAGTTCTGCTGTGGAGCCCCAGAGTTCTGTTCTGACTCTACACCAGTGTGCTAAATGAGAGAGGCCAGGCTAGAGACGGGCACCACCCCCCTCAGGGCTCTGTGTATGCCCCACCTGCTCCTACAACCCCTctccaccctcaccctcacccaccCTGCCCTGTCCCCTCTCAACCAACTGTTCATCCAAATCACTTTAGAGAAGGGTCAGCATGCTAAAAATACAGGCAAGGACTTAGTATGAGTGGGGCTTTATCCTGTCTGAGGTTTATCCAGGCTCTGATCACTCAGCTGTGTTTATCTGCTCTAGTGGAGTGATTAGTAGAGATATTCAATTCAGTACAACATTATTTATCCCCTTAGCGACATATTGATTAAAACATTGGTGTAGTCTATGTCCCTAAAACAAGGTTTTAAGAGTCAGAAAACATTGTATGTTTTGGCACCATTATACAGTAAGAAGAGATACAAAAGACTAACCTTTTAGTCTTGCTGTTTGTCTGAAGTATTGCCTTCCAAGGTTTGAGCTGTTCATTGTTTTAATGAAGACAAAAAAGTACAAAAATGAACAGCATGTTGAGATTATGccaaagagagatacagatatCGTATGCCAGAGACACAGGTATCGTATGCCAGAGACACAGGTATCGTATGCCAGAGTTGGGGCCATTCacatttaaattcagtcaatTCTGAAAATAAACTAAAATTCCAATTCCAAAATGTTCTCCTAGAGAAGcattgagaaaaaaaatgtaattccatAATCGACTAACTTAAaaaggaattgaccccaaccctggttcaTAACCAGCTTTGTCTTGAACATCATAATAACCCATGAGACACATAAGAGCTCTTATGGGAGCATCAGTTAAAACACTTACAGTAGGCCTTTGCCCTGAAGTGCATGAATAAAATATTCAGACAACAGTTAATGTCTCAGTTGATTTGAAGAGACACAAAAACAATATGTACCTAGCTTCACTTAATGCCCTCAGCAGTAGCAGTGAGCCAAGGAGGAATTGACTTGAGGGTCTCTCCTTAAGCTAATATGAATGAGTTTCAAATGTGTGCTTTACTGTATGCACATCTGTTTCTGTTGGACTGTTGGATAAACAAACCAGTTGAATTGGATTAGACCTTTAAGCTGTGAATCCCAGCTTGTCAGAGTCACTCAACATTTATTAAGTCATCTTAAGAGATAAAATCTCTCTCACTGGTTTGATTCACAAGTCAAGTGTGCCTTTTGAATGAGGaatggaggggtgtgtgtgtagaatatgtctctgtctcttttgtGTCTTTACTTGATATAACCAGCACTGGGCTGACCGCTTCAGTCAACACTAGGGGGAAATTGCATTGTACGCTTGATCAGCTTTTACCTGGCAATAAGCTGGTAGTGCAATCCTATGTTTTTTGAAGTGtacatgtattattttatagGCATTGAGTGGCTTTGTGGCTTCCTGCTGCTTGTCTGCCTTGTGGCATCATTGTACGGTCCTCTTTACAcaacaaaataaatgtgtttgcaaTGTG
>TU266037
GCTGTCCAGGGAGAGACCCTCCGGAGAATGATACAGGAAGACAAGGCTGCAGGACTCATCCCCTTCTACTTCTGTGCTACTCTTGGGACCACTCCCTCATGTGCATTTGATCACATTACTGAACTTGGGCCCATAtGTAATGCAGAGAAAATCTGGATGCACATTGATGCTGCATATGCTGGGAGTTCCTTTATCTGTCCTGAATTCAGACCCCTGTTGAACGGCATTGAGTTTGCAGACTCTTTCAATTTCAA

Function

NR:

description
aromatic-L-amino-acid decarboxylase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971570.1 False 1536 mRNA 0.55 14 20446669 20471212
XM_036971566.1 False 3809 mRNA 0.47 14 20450742 20473526
TU266037 True 254 lncRNA 0.47 4 20461278 20463342

Neighbor

gene id symbol gene type direction distance location
LOC110512801 LOC106579904 coding upstream 6651 20354417 ~ 20440018 (+)
LOC110512735 NA coding upstream 100640 20278178 ~ 20346029 (+)
LOC110512678 LOC106579830 coding upstream 214253 20092075 ~ 20232416 (+)
LOC110512638 LOC106605406 coding upstream 430259 19930076 ~ 20016410 (+)
LOC110512599 LOC106579727 coding upstream 569525 19863975 ~ 19877144 (+)
LOC110512886 LOC106579923 coding downstream 17342 20490868 ~ 20508431 (+)
LOC110512899 LOC106579931 coding downstream 35766 20509292 ~ 20531339 (+)
tbrg4 LOC106579951 coding downstream 131639 20605165 ~ 20622065 (+)
LOC110512944 LOC106605423 coding downstream 155886 20629412 ~ 20647074 (+)
LOC118946510 NA coding downstream 228678 20702204 ~ 20709034 (+)
G232545 NA non-coding upstream 298781 20111139 ~ 20147888 (+)
G232520 NA non-coding upstream 366179 20078644 ~ 20080490 (+)
G232448 NA non-coding upstream 480173 19965733 ~ 19966496 (+)
G232341 NA non-coding upstream 541134 19898442 ~ 19905535 (+)
LOC110512626 LOC106579786 non-coding upstream 582792 19858980 ~ 19863882 (+)
G232719 NA non-coding downstream 8180 20481706 ~ 20481949 (+)
G232733 NA non-coding downstream 32500 20506026 ~ 20506658 (+)
G233507 LOC106566552 non-coding downstream 74880 20548406 ~ 20548665 (+)
G233508 NA non-coding downstream 75284 20548810 ~ 20549016 (+)
LOC110512505 LOC106579702 other upstream 602017 19821356 ~ 19844652 (+)
G231983 LOC106597055 other upstream 1212374 19226366 ~ 19234295 (+)
G231438 NA other upstream 1594687 18851249 ~ 18851982 (+)
LOC110511593 LOC106579240 other upstream 1859828 18569698 ~ 18588248 (+)
G230916 NA other upstream 2150564 18295354 ~ 18296105 (+)
G233521 LOC106579937 other downstream 85250 20558776 ~ 20565712 (+)
G233545 NA other downstream 134767 20608293 ~ 20608725 (+)
G234322 dcst2 other downstream 790549 21264075 ~ 21264506 (+)
G234340 LOC106580151 other downstream 813200 21286726 ~ 21287002 (+)
kiaa0319 LOC106580477 other downstream 1544068 22017579 ~ 22037490 (+)

Expression


Co-expression Network