LOC110512886 (LOC106579923)


Basic Information

Item Value
gene id LOC110512886
gene name LOC106579923
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20490868 ~ 20508431 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593004.2
CCTCCTTCTTGGAGTACAAGTCTCCTGGGCTGTTAGGCTGATCAATGAGGAATGAGGAGCTGTATTCTTCAGATCACTTACTTATGCTCTGCTGCTTCCAACTGACGAAGGAAGGTCAACACTCACTCTGAGGAAATGGCAGGCAAGTTTTGGACATATCTAGCTTTCTTCTTTCTCCTGGCTAGTCTGGCTGTCATCATTACTATGTCCCTGATCCAGGGTCATAAGCGTGTCTTTGAGTCACGTCTGAAGTATGGCATAGTAATCGACTCAGGCTCCTCCCGCTCTACTATGTATCTGTATCAATGGCCAGCCGAGAAGCAAAATAACACTGGAGTGGTGAGCCAGACACTCAGATGCATGGTCGCTGGCCCTGGTATCTCGGATATGTTAGTTGACAATGCACAGGACCAACAGTCCTGGGTGTCGATCAGAGAATGTATGAACAACATCACAAAAATCGTCCCCGCAGACCAACACAATTCAACCATCCTCTACCTTGGGGCAACTGCTGGGATGAGACTGCTACATTCACAGAATGAAACTAAATCCAATGAGATCTTAAAGAACCTGCAGAACTACCTCCAATCTCTGCCGTTTAACTTCCAAAACGCCTCCATCATGTCAGGGGACGAGGAGGGGCTGTACGGCTGGATCACCGTCAACTATCTGATGGGAAACTTCCTGGAGAGAAACATATGGAACATGTGGGTGCGTCCTGCCGGAGGGAAGATGGTGGGCTCCATGGATCTAGGAGGGGCTTCCACCCAGATAGCGTTCACCCTCCCAGATCCCAACGCCCGAGGAACAGACATCATGCGGGTCTCCCTCTATGGCTACGAATACAACATCTACACTCACAGCTTCTTGTGTTATGGGAAgaacgaggcagagaagagagtCCTCGCTGCTTTAGTGAAGAACTCTGAGAACGCTACACATGTGACCAACCCCTGCTTCAATCTTGGTTACAACATGACTGTGTCGGCTGAGTCCATCTTTGGGACTGAGTGCATAAAAACGCCTGCCGACTATGACCCCAAGCAGATGATCACCCTGAAGGGGTCATCAGACAACGGAGCCTGTAGGGATGTGGTGCAATCCATATTTGACCTGACCTGCACGAAGAACTGTTCCTTTGACAGAGTATACCAACCATCCGTGGGACCCGGGGACTTTCTGGCCTATGCTGGGTTCTTCTACACTGCTCAGGCTGTTGGGCTGAAAGGCATTTCACAACTGGACCAGTGGAACTCCTCTACCTGGGAATTCTGCTCCTGGGATTGGCCCACCCTCACGCTAAAAAAGGGCTGGATAGCTGAAAAATACAGAAGGTCCTACTGCTATTCAGCACATTACGTCCAGACATTACTTGCAAATGGCTACAAGTTCAATAAAGACACTTGGAAACACATTGACTTCCAAAAACAGgTACATAACACAAGTATAGGCTGGAGTCTGGGCTACATGCTACATACATCTAACATGATCCCTGCTGAGGCCAAGCTGGTGCGTCTGCCCATGGCCAACTCTGTGTTCAgtggcctcctcttcctcttcaccgCCCTCACCATCGTCAGTGTCATGTTTCTGATCATCAAGGCTGTGCGTGCCTGCTACTGACCCCCACTAGAGGGCAGAGTGTTCAAATTACAGTTAcacctagggttgcaaaattacagtaactttcccaaaatgttttttttccagaaatccgggttggaagattcctggaatcaggagggaatgagcAGGAAATCTGGGAATCTACCAACTGGGATTTCTAGAAAACCttggaattttgggaaagttacagCAGTTTTTCAACCATAGTTACACCCGATGGAGGAAAGTGCTTCTGGTCCCACCCAGACACAGTTACAGCAGGCAACAATAGAACATGGATAGGAGGAAGGTATTATCACCAGGTATTATCATCATCAGTTAAAGAGATTTAACAGGATCTTAAAGCTCCCATGCAGTcttattcattttattttttaaatcaacactatatgtctaataaatcactgtgtgtgtttatttcatgaaaataactcCAAACATATTTGCTATTATTTATTTTCCTGAGCCTCCTTTTGCcattgaaatgctcagtctgatcgtgtgggtgtgttgatacaaatgtaaatatatttacatacacatcCCTGATTGGCAGATAGGATCGTCTAGACTCTAGACTAGAGCTTACCCCGCTTACCCCTTCAAAGTAGGATGAAACATATGCAAATAAAAGTTGACTGGTCATTGGTCAAAATAATCAGATTGTGTTGTCATACTGTGGGACAAAAATTCCCTCCCACCTAAACAGTGTTGTTTTGACCTCATAGTGTAgaaatataattaaaaaaaaaggGGAAATCACGTTttgactgcactgcccctttaagcaCTTACAAAagcataacatattgtacaaatttaaattcgtaacatatcatatgcaTTGCAGGGgaataaaaaaaattattttGCAAGAGGTatcatatcatacaaaatggatacAATTGTACacaattgtgcaacattttcggGGTATTTTGGggtactttcaaaactactggctgaaattatacaaaacatAATAATGTATCTTAAGCTGTTAAAAGGATCTCCATTCCATGTGTTTGAGTGTTTTCAGTGAGAAGATACACTTGAGGGTCAGTAATGCATTATAAGATCTTGTTCGCTGCTTTAGGCTCATCCCAAACAGATGAATGAGACAATTCTAAGAGATTCAGTGACTTCAAACACTCAGTTGGTCTTTAAAGTATGATAAAAGAGAACTATTAATTGCATAATGAACTGCTGAGCAAAAATGATCGCCATTTGCACTAAGTCATCAGCTATACAGTACTGGAGATCAGGAGGTTGAATTAAGGTTGAAGGTAGCATGGAAATGACTAACctgaaatgactaaaatgtctttattacatATTTTGCTGGATGGCATGGCATTGTCGGTTATCTACCTCCGAGATCTTGCATGTTTCTCGTCTGATGTACTATATCAGCAAATCCTTGTCATGCGGTCATTTTTTGTTGGTTGAATGTTCCATATTAACAATAAACTGAACATTACCCATGATGTTATCA
>TU266070
GCTGTATTCTTCAGATCACTTACTTATGCTCTGCTGCTTCCAACTGACGAAGGAAGGTCAACACTCACTCTGAGGAAATGGCAGGCAAGTTTTGGACATATCTAGCTTTCTTCTTTCTCCTGGCTAGTCTGGCTGTCATCATTACTATGTCCCTGATCCAGGGTCATAAGCGTGTCTTTGAGTCACGTCTGAAGTATGGCATAGTAATCGACTCAGGCTCCTCCCGCTCTACTATGTATCTGTATCAATGGCCAGCCGAGAAGCAAAATAACACTGGAGTGGTGAGCCAGACACTCAGATGCATGGTCGCTGGTGAGTCTGCATGTTTTTTAAATGGTATTTTATTGGCCCAACCCTCTTCAGAGAACTaaagaaatgttttattttcacaGCTATTTTGTGGAATAGACATTTTACATATATGCACAGTAttacaaaaacagaaatatatgTTTGGGATAAACACATTAAATGTGGATACATAATACTGAGACATATCCGGTGTACATGATAGTGTTTTTGGTCCTAACTATTCTAGAGCATCAGcttttaatcccacccctcagctactttcagcccatcccacctatctccgtaCACCACCCTCTCTTGATTTCAATGTGACatgtatttttcaactgtgctgtgatgtcttACATCAATTCTGAACCTTTCCAATTGCATAGTATCCATAAATTGTAAGTTAAAGATGAATATATTTGCTGAGAGTATTATTATATTGCTGATATATTGACTTTTGCTTTCCAAATCGTCCAATGGTACAATTTGTAGGGTTAATTTTAGATGAATGTTGTTATTTTTCAGCCTCTCCTGAACCTGTGACCCCAACAAGCTACATGGGGGCAAAACCAGAATCAATTATCGAATGATTATGTCTCTTCGCAGTTAAATCTGCAGAGCTGAGATGGTTGTATGCctcatatactgtatactgtctaacATTATGCAGCAAGAATGCTGTATAATAATTTACATTTAAAAACGGAGTCTGTATGTTCATATTGAGATGCAGTGTCACTGGTGAGTCTGCATCGTAATGTGATGAACCTGACACATTCTCACGCAGGTCACAATCTTGTCCTCATATTTTTTTTcttgtattttaccccctttttctccccaatttcgatcttgtcttaTCGCTGCTACTCCCCAATGGGATCGGCAGACAAAGGTTgagtcatgcatcctctgaaacatgacccgccaaaccgcgcttcttaacacctgcccgcttaactcggaagccagctgcaggaaacactgtacaactaaCGACCAAGGTCAGCCTGCCTGGCCTGCCAGAGCGTGATGAGACAACTAAAGCCCCCccagccaaactctcccctaacctggacgacgctgggccaattgtgctccgccttatgggactcccgatcacggccagttgtgacacagcctgggatcaaacccaggtctgtagt

Function

NR:

description
ectonucleoside triphosphate diphosphohydrolase 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593004.2 False 3121 mRNA 0.43 10 20490868 20508431
TU266070 True 1466 lncRNA 0.43 3 20490926 20496169

Neighbor

gene id symbol gene type direction distance location
LOC110512870 LOC106605416 coding upstream 17342 20446669 ~ 20473526 (+)
LOC110512801 LOC106579904 coding upstream 50850 20354417 ~ 20440018 (+)
LOC110512735 NA coding upstream 144839 20278178 ~ 20346029 (+)
LOC110512678 LOC106579830 coding upstream 258452 20092075 ~ 20232416 (+)
LOC110512638 LOC106605406 coding upstream 474458 19930076 ~ 20016410 (+)
LOC110512899 LOC106579931 coding downstream 861 20509292 ~ 20531339 (+)
tbrg4 LOC106579951 coding downstream 96734 20605165 ~ 20622065 (+)
LOC110512944 LOC106605423 coding downstream 120981 20629412 ~ 20647074 (+)
LOC118946510 NA coding downstream 193773 20702204 ~ 20709034 (+)
LOC118936416 steap4 coding downstream 210426 20718857 ~ 20758800 (+)
G232719 NA non-coding upstream 8919 20481706 ~ 20481949 (+)
G232673 NA non-coding upstream 24523 20393812 ~ 20466345 (+)
G232545 NA non-coding upstream 342980 20111139 ~ 20147888 (+)
G232520 NA non-coding upstream 410378 20078644 ~ 20080490 (+)
G233507 LOC106566552 non-coding downstream 39975 20548406 ~ 20548665 (+)
G233508 NA non-coding downstream 40379 20548810 ~ 20549016 (+)
G233515 NA non-coding downstream 44384 20552815 ~ 20553323 (+)
G233546 NA non-coding downstream 100469 20608900 ~ 20619825 (+)
G233550 NA non-coding downstream 118600 20627031 ~ 20627367 (+)
LOC110512505 LOC106579702 other upstream 646216 19821356 ~ 19844652 (+)
G231983 LOC106597055 other upstream 1256573 19226366 ~ 19234295 (+)
G231438 NA other upstream 1638886 18851249 ~ 18851982 (+)
LOC110511593 LOC106579240 other upstream 1904027 18569698 ~ 18588248 (+)
G230916 NA other upstream 2194763 18295354 ~ 18296105 (+)
G233521 LOC106579937 other downstream 50345 20558776 ~ 20565712 (+)
G233545 NA other downstream 99862 20608293 ~ 20608725 (+)
G234322 dcst2 other downstream 755644 21264075 ~ 21264506 (+)
G234340 LOC106580151 other downstream 778295 21286726 ~ 21287002 (+)
kiaa0319 LOC106580477 other downstream 1509163 22017579 ~ 22037490 (+)
G232733 NA non-coding downstream 9857 20506026 ~ 20506658 (+)

Expression


Co-expression Network