LOC110512899 (LOC106579931)


Basic Information

Item Value
gene id LOC110512899
gene name LOC106579931
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20509292 ~ 20531339 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593011.2
AGGACTTTTACAGTGAAATAACCTTCTCCGAAACGCACGGGTCCCTCGGGAGTGAGGGCTGCTTGTGATATATGCCTATGCTCCACTAAAGCAAAACTGTGGGTTGGGATTTATTCTGGAGAAGTAGGCTACCACGAAAGTTTGAAGCTACTGAAACGTACCGTAGCCTACTTAAGTATTGTAATTTGCGAGATTTATTGTTACCTTTATTAATGCCAAAGTACCCTACAATAATGACAACTGCAATGTAGCCTAAAGAAGGAGATTAAACATAGTTCAATTCAAATTATCAAGTGATGGTCTATTGAAAAAGCACTGTGGAGAAACCGGAGACTTTACGCACGCTGCATCTTCAGAACCATTGCTGTCTAGTCTTCAATAACGTTTGTGTAACCATATATACATGGTGTCACCGGACGTGTTTGCACTATAATAAACGCTGTAAACTTTTCTTGTGGAATGCACCCGAGTGGGGAAAACGATGGCCTTACGAGTGTGGTCCAAGATCTGCTGCAAGAGGTGGGCAGTGTgggccttcctcctcctctttaccctgTCTGTGGTGGTGATCAACATCCTCCCCTTCCCCCCCTCTGAGACACGCAGGCTGCCCTCACGAGGCCTGAGCTCTGCTGGAGCCAAAGGGTATAGAGCGAGGGCAAGACCCAGGGAAAGGGCCTCATTTGCCCCTCACCACCAACACCATCTTCCTCTACCCCTCAAAGGTCACAGTGGAGGttggaagcagagtgacaaaGTCAAAGAGTCCTCAAAGCATCACCTGGTCATGGCCCAGCCCAAACTGGATAGGAGAGCAGCTAGCATGACAGATAAGAGAACTCACAGCAACTACAAGAAGAATCGTAAAACTAAGGGCATCGCCTCCGaaaggaaagagaagaaagagatgCCGGCAAGTTCTATTAGAGACAAACAACATGATACCGCACCATTGACAGTCAATGCTGTGCTAATAAGGCATGATGGAAGCCATCTAACCAACTGCAGTGGTTCAGAGCTCTCCACCCAGTCACCACCTCTTCCCAGACAAGAGAACCTCCACCCAGCCGTGACCCAGACTGTAGCGCACAGCCAGAGCCGCCCTTCTACTGCCGCCCTTCTACTGCTCGGCCTGTCTGACTCTGAGCACAAATGTACTCCAGATGAACAGAGGCAGGACCAGGGGCAAACcaggcaggcagggcaggcaGGGAAAGCAGGGAGGAAGAACCTAACCAAGCAGCAGGCTGTGAAAAAGGTCCCCAGAGAACTCAGGAAACGTGACAGACAGCCTTCGTCTGGGTGTAAAAAGACCCGGCCCACTGCAAAAACAGCAGCAGAGCCAGAGAAAGGGAGCGAGGGGGAGGCCCACTGGTGTAAGATGTCAGCTGGAGAGAGGGAGTTCCCAGACACTGACACACGGAGAATAAGGACTGGGGACCCTGACTCTGTGCCATGGCTCAGCAAGGACGACATTCACAAGATGGAGTTCCTCTCGGGCAGTGAGGTTGTCAGTAAGGCTAGGCTCCCAGCCCACGGACAGGTCCTCCATGTAGGGCTGGGTGCCCCTCATCATCCCCCTTCTCTTGGGGCTCCATTGGCTGACCACAGTGGGCACTGCCAACAGGGTCTGTGTGCCCTGATCAAACGTCCAGACGACTGGTTCGAAGTCTTCGCTTTCCATTTAGACCGTGTTCTCGGCTTGAACAGGAGTCTGCCCACAGTGCTCAGGGACTTCCACAGTGACATCCTGCCTTATAAATACACCAGAGGGGCAGCCAGACCCGTGGTGTGGTGGGACCCAGGCATCCAGCACCTGGCTGATGATGACAATGACCAGAACTCGTTCCCTCTCACCTGGCCCCAGTACCAGAGCCTGCTGAGGGCCAGGTGTGGAAGTGGCAGCGGCGTGGCCCTCAACGAGACCCCCTGTGTGGGGGTTCACCATGCGGAGTGGGGGCACCTGGCACTCTTTGACTTCCtcctacagGTGAATGATCGTCTGGACCGGTACTGCTGCGGTTTCCAGCCTGACCCAGCAGAACCATGTGTGGAGAACCTGCTACATACCAAGTGCAGGAACTCAAAGGATCTAGTGCTGGTGCACATCCTGGTGAGGAGGGTAGAGCCTACCAGACTAGTGTTTATAGACAATGCAGGCAGGCCAAATCATCCCCATGACAACCTCAACTTCCGCTTAGTAGAGGGCATCGATGAGTTTCCAGAGAGAGCTGTATCAGTTCTCCAGTCTGGCTGCTTGGAGAGCATGCTCCTGAGCTCTCTGTATATGGACAAGCAATTCTGGGAGAGCCGAGGGGGGGCACGTGGCCTGAAACCTCTCATCCACACTGTTGAGCAGAGAGGGAGGATACTGCTGCAGCACATCCACGACAAGAGACTGAGACTAAACAGGGATTTGTGAATCCAATGGCCCAGAAGGCACCCAGCAGCACATTCATTTCATCCAGGCAGGGGGTGCCTGCGACAGACATGGAAGCCTCCTCAAGGTCCCAGCCAGCCTAAAGACACAGGGTgtgtcttaaatggcaccctattccctatatagtgcactacttatgactaTAGCCCTTCATTGTCTATAAACACCCTaagagccctggtcaaaggtaatgcactatatagggaagagggtgctcTTTGGGCCGCAGATACAGTATGCCTGTTCTATGCTGGTTGTGGTTCCCATCCATGTTGTATCCATACATCTTGCCAACATCCCTCAAGCCAAACAAATCATGTTATTGAAATTGCACCCTCTTCTTCCCTGACTGTTCATGAGGTGAGTTTtgtattttcaaataaaaaatagCAGATTGAAAGATCTATTTAATGTCTGTTATATGAGAtaagctgtcacgttctgacctttatttcctttgttttgtcattatttagtatggtcagggcgtgagttgggtgggcagtctatgtttgtttttctatgatttgggtatttctatgt

Function

NR:

description
protein FAM198A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593011.2 True 2983 mRNA 0.51 5 20509292 20531339

Neighbor

gene id symbol gene type direction distance location
LOC110512886 LOC106579923 coding upstream 861 20490868 ~ 20508431 (+)
LOC110512870 LOC106605416 coding upstream 35766 20446669 ~ 20473526 (+)
LOC110512801 LOC106579904 coding upstream 69274 20354417 ~ 20440018 (+)
LOC110512735 NA coding upstream 163263 20278178 ~ 20346029 (+)
LOC110512678 LOC106579830 coding upstream 276876 20092075 ~ 20232416 (+)
tbrg4 LOC106579951 coding downstream 73826 20605165 ~ 20622065 (+)
LOC110512944 LOC106605423 coding downstream 98073 20629412 ~ 20647074 (+)
LOC118946510 NA coding downstream 170865 20702204 ~ 20709034 (+)
LOC118936416 steap4 coding downstream 187518 20718857 ~ 20758800 (+)
LOC110503853 LOC106579991 coding downstream 227470 20758809 ~ 20783316 (+)
G232733 NA non-coding upstream 2634 20506026 ~ 20506658 (+)
G232719 NA non-coding upstream 27343 20481706 ~ 20481949 (+)
G232673 NA non-coding upstream 42947 20393812 ~ 20466345 (+)
G233507 LOC106566552 non-coding downstream 17067 20548406 ~ 20548665 (+)
G233508 NA non-coding downstream 17471 20548810 ~ 20549016 (+)
G233515 NA non-coding downstream 21476 20552815 ~ 20553323 (+)
G233546 NA non-coding downstream 77561 20608900 ~ 20619825 (+)
G233550 NA non-coding downstream 95692 20627031 ~ 20627367 (+)
LOC110512505 LOC106579702 other upstream 664640 19821356 ~ 19844652 (+)
G231983 LOC106597055 other upstream 1274997 19226366 ~ 19234295 (+)
G231438 NA other upstream 1657310 18851249 ~ 18851982 (+)
LOC110511593 LOC106579240 other upstream 1922451 18569698 ~ 18588248 (+)
G230916 NA other upstream 2213187 18295354 ~ 18296105 (+)
G233521 LOC106579937 other downstream 27437 20558776 ~ 20565712 (+)
G233545 NA other downstream 76954 20608293 ~ 20608725 (+)
G234322 dcst2 other downstream 732736 21264075 ~ 21264506 (+)
G234340 LOC106580151 other downstream 755387 21286726 ~ 21287002 (+)
kiaa0319 LOC106580477 other downstream 1486255 22017579 ~ 22037490 (+)

Expression


Co-expression Network