LOC118944500


Basic Information

Item Value
gene id LOC118944500
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20552753 ~ 20554867 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039838.1
tggtaCTTTAACGCACGCacatattcatcactcctccctgctccGTTATAAGATAagttaacaatgttggtcgacacacaaattaacttctgtctTAGTACATACATTTCACACTTGTCAGTGTTCATATTTAATATAAGCAATATTTATTATACTTATatatgttgtggatgagcgcattgtttgttctgttcctctctctctgtagcttccgggtatgctggataaggacccgagctaagggaattgggCTGACTTTGTAGTGCCTGTCCCGAATGGTTCATTCATGTAAATGGGCATATTGAAAGACACTGTCACTGTCAGTAGTGATGTATTGTTGTAAATGTTATTTTGGGATATTGTTTCATAAAAAAcgtgttgcaatgtatatcctttagtatgtttagttaatggaaaatgtaggtttgacTAGGTAATCGCTTAATTAATTTgtgttaattgttctgaggggaggggctagccctacaaaaggagcctctctttcagttcaTGGAGAGgcattttggattgagctgtggatggggTAGCATTGTTtttagctgtcccataaggtatatgtttgatggcagtactgttgtttttgttcCGGAATCAATTTGTAAATAAACACGCTGAAGCACAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039838.1 True 645 mRNA 0.38 2 20552753 20554867

Neighbor

gene id symbol gene type direction distance location
LOC110512719 LOC106579893 coding downstream 277445 20272374 ~ 20275308 (-)
LOC110512703 LOC106579851 coding downstream 282381 20262526 ~ 20270372 (-)
dnah5 LOC106579813 coding downstream 462056 20023910 ~ 20090697 (-)
LOC110512652 riiad1 coding downstream 534251 20014592 ~ 20018502 (-)
g6f-like-b g6f-like-b coding downstream 621013 19914520 ~ 19931740 (-)
LOC110512912 LOC106579937 coding upstream 8781 20563648 ~ 20581532 (-)
trnat-ugu-31 NA coding upstream 28413 20583280 ~ 20583352 (-)
LOC110512925 NA coding upstream 35579 20590446 ~ 20595555 (-)
trnat-ugu-32 NA coding upstream 37189 20592056 ~ 20592128 (-)
glipr2l LOC106605424 coding upstream 93511 20648378 ~ 20652052 (-)
G233514 NA non-coding downstream 303 20552215 ~ 20552450 (-)
G233491 NA non-coding downstream 19257 20529880 ~ 20533496 (-)
G233479 NA non-coding downstream 44388 20506750 ~ 20508365 (-)
G233478 NA non-coding downstream 47127 20505226 ~ 20505626 (-)
G233474 LOC106579923 non-coding downstream 51406 20501109 ~ 20501347 (-)
G233914 NA non-coding upstream 99330 20654197 ~ 20654460 (-)
G233917 NA non-coding upstream 101334 20656201 ~ 20656503 (-)
G233942 NA non-coding upstream 147338 20702205 ~ 20709007 (-)
G233955 NA non-coding upstream 174955 20729822 ~ 20730058 (-)
G233957 NA non-coding upstream 177111 20731978 ~ 20732335 (-)
G233513 LOC106561082 other downstream 756 20551783 ~ 20551997 (-)
G233052 LOC106605397 other downstream 796135 19756204 ~ 19757908 (-)
G232980 NA other downstream 904124 19648086 ~ 19648629 (-)
rims2a LOC106579570 other downstream 953652 19416054 ~ 19652601 (-)
LOC110511176 LOC106579058 other downstream 1270615 19065512 ~ 19282368 (-)
G234224 LOC106605437 other upstream 623730 21178597 ~ 21180682 (-)
LOC110513321 LOC106580205 other upstream 890621 21438546 ~ 21455972 (-)
G234600 NA other upstream 914794 21469661 ~ 21469945 (-)
G234621 NA other upstream 943541 21498408 ~ 21498832 (-)

Expression


Co-expression Network