LOC110512925


Basic Information

Item Value
gene id LOC110512925
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20590446 ~ 20595555 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471931.2
GCCACATTTTATTTTGTGTGTAGGCCTAGTGTGTACATGGATATTTGCATAATGTATGCATACAGAGCAGGCTCTATTTCTTTCAACCATCTCCAGGTGTATGTAGACAATTTGCGGTGATGGGGTGCCTCGAGTGTTGACTGGCGTTTAACTGTTCTGATGGTAGCGCATTTGGGATATTGTAATCTATCGAGAAATACGAGTTAGCAGCCACCAGAATCACACCTTGAAAGTTTTATAGTTGCCTGCGAAAGACTTGCCTTTCTGGCTCGGTGGAACAGCGTTTATCAGTCCTCTGCGCACCCCCAAGTCTTATTTGCTGTGGATGGACCCCCATCTAGCGGACAACATGAGTACTGCACAAGCGGACGTGAAAGAAGACTGTTAAAAAAATCAAAGATGGCGACTTGATTGTAGCACAAATGTCTTTAGTTCATAACCCTCTTGTTGtacgtccaaccgacctcacaaccgcagaccacgtgtaaccacgccaggcatcttcacctgtgggatcgtctgagaccagccacccggacagctgatggaaATGTGGGTTTGCAGAACCAAAGAATTTCTACACAAACTgtcatcatcctcaccagggtcttaacctgactgcagcttggcgtcgtaactgacttcagtgggcaaatgctcacctttgatagccactggcacactggtatctgtgaccaacagatgcatatctttattcccagtcatgtgaaatccatagattaggtccaaatgaatttatttcaattgattttattcaattgatttccttatatgaactgtaaaactcagtaacatttttgaaattgttgcattttatatttttttggtgTGGGTGTCAGTATAAACGCAGCCACTCTGTTTTATTTAGAGATTGAGCATGATTAATGCAAATGTAATGTCCCCTAACCCCCTGTCAGTAGGGTGCAAACTGTGATTAATGAAATGCCAAAGGAAATATGGAGCTGTGAGGAGAGCAGAGCAATGCAGTATGTTGAAATGTTTTCTAATATAAACATTCTCTATGCAATTTGTGATATGTGTATATAGCTTGTCCTGAAAAACAAAGTAGTTTGCACATGAGTGAATTGTAACTAGTGGTCTATGCAAGATAAACATAATACTAGAGAAAATTATAAATGTTCCATACTTTGGTCTCCATAAAATATA
>XR_005041371.1
GCCACATTTTATTTTGTGTGTAGGCCTAGTGTGTACATGGATATTTGCATAATGTATGCATACAGAGCAGGCTCTATTTCTTTCAACCATCTCCAGGTGTATGTAGACAATTTGCGGTGATGGGGTGCCTCGAGTGTTGACTGGCGTTTAACTGTTCTGATGGTAGCGCATTTGGGATATTGTAATCTATCGAGAAATACGAGTTAGCAGCCACCAGAATCACACCTTGAAAGTTTTATAGTTGCCTGCGAAAGACTTGCCTTTCTGGCTCGGTGGAACAGCGTTTATCAGTCCTCTGCGCACCCCCAAGTCTTATTTGCTGTGGATGGACCCCCATCTAGCGGACAACATGAGTACTGCACAAGCGGACGTGAAAGAAGACTGTTAAAAAAATCAAAGATGGCGACTTGATTGTAGCACAAATGTCTTTAGTTCATAACCCTCTTGTTGGTAAGAGTTTCTGCTGTTTACATATGTGAAAGAGttcaagacacacacactaagccTGACCTGTCATAGCTCTATGTAAAAGCTGCCTCTAGATAAAGATTTAAGATAAGTTTAGTTTCTACTAGCCTAGCAAATAGAGTTatgggggaagggaggggggtaTATAAAAGCCTGGTTTTTGTCTAACGACACCAATCACAGGCCCAGCACAGCCCACTACTCTACATAACCCCCAGCCTGCTCTCCGGCTCGGTAAAAGGCAACTGTTAGAATCTTTTAGATAGTACCTCCAAAAGTGCTGTGTGTGTATAGCGGATGATTGACTTGTGTTTTAAGTAATTGTGAGTATCAGGGTGCTTCCAGAGATGAACTGTCAATGAGACTGCTAGTCTGGTCCTGTAGGTAGAGTCTGTAAAAATGGACTATTTGTGCTTGGAATGATAGAGAAGATTAGGATGACATGGGGTGTGTGGAGAAAGCAGGCACTCCTGTGGATGTTTGGTACCCTCTAGTGGTCATGTTGGGTAAGTGCAACAGGACAGCTGAACTAAACCCAGACCAATTTAGACAGTAAATCACTGATACCCAGACTAAACAACACCAAGGAGGCCGTGAGTTAATACATTTGTGACTCCCATCGGCTCTAACGTGTACCGGATCGAGTCCCCGATACACTCCTCTCCTTGGGTGGAGATCAAATGCAAGGGCATTCTCCAGGCAATTCGATAGATATTTCCCCAGTCATGCCACCGTGCATAGTGGGTTCCCTGGCTGCTCAAACATGAATCCTCTCTTGGACGTTATATGCGAGAGTGGTGTATCTGAGAGAATGCGTTGTTATAATATTGTAGTAGCCTAATTACGAGTGCAACTTAGAAATAACACAAACAGGCTATGAACAACATACCTTAGACTGTTCTCGTCTGTTTTTTACGAGGAATGAGTTGGGCTTTAGTTGTCTGTTCCCCTCTTTTCCTATTCGACCAATATGTAACTGGAGGTCAAACCACACTTTCTGGACCAGACCCCTTGGTGTACTGGGATTCAGAGCTTGGAAGTTTTGGAGCTGGGCCATGTCCTTATCAGTGATGGGAGGGTGGCTGTTTGTGATATTTTCCTTGAATTAGCTGTTTGATGTTGGCCATAAATGCATGAATCGTGGTGGTAAATTTAGTGTCCTTCATAAGACACCAGCTGTGACCGATGGGTGGGTCATTTAGAAACTGGTAGTGCCAGATAACTACTTATGCTGTACTGCTCCCCCTTCACGTTTCCTAAATTTCCATAAAACTGTCGGAGAAACTAATTAAACTTCCTTAGTGACAGTTTAAGTAAACTTTTTTATTCTCTGTTAGCCAGCCCTCGAAGCAACGCACAGCCTAGTTTGTATTCTTAACTGTTTTTATTCGTTGCGGCTTTTCTCTCAATGCAGTA

Function

NR:

description
PREDICTED: uncharacterized protein LOC105908748

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471931.2 False 1188 mRNA 0.41 3 20590446 20595555
XR_005041371.1 True 1884 mRNA 0.44 2 20593202 20595555

Neighbor

gene id symbol gene type direction distance location
trnat-ugu-31 NA coding downstream 7094 20583280 ~ 20583352 (-)
LOC110512912 LOC106579937 coding downstream 8914 20563648 ~ 20581532 (-)
LOC118944500 NA coding downstream 35579 20552753 ~ 20554867 (-)
LOC110512719 LOC106579893 coding downstream 315138 20272374 ~ 20275308 (-)
LOC110512703 LOC106579851 coding downstream 320074 20262526 ~ 20270372 (-)
glipr2l LOC106605424 coding upstream 52823 20648378 ~ 20652052 (-)
si:dkey-12j5.1 LOC106580016 coding upstream 332399 20927954 ~ 20968368 (-)
LOC110513019 LOC106580057 coding upstream 496232 21091787 ~ 21100107 (-)
LOC110513063 thbs3 coding upstream 516667 21112222 ~ 21133895 (-)
LOC110513075 NA coding upstream 540522 21135542 ~ 21152356 (-)
G233514 NA non-coding downstream 37996 20552215 ~ 20552450 (-)
G233491 NA non-coding downstream 56950 20529880 ~ 20533496 (-)
G233479 NA non-coding downstream 82081 20506750 ~ 20508365 (-)
G233478 NA non-coding downstream 84820 20505226 ~ 20505626 (-)
G233474 LOC106579923 non-coding downstream 89099 20501109 ~ 20501347 (-)
G233914 NA non-coding upstream 58642 20654197 ~ 20654460 (-)
G233917 NA non-coding upstream 60646 20656201 ~ 20656503 (-)
G233942 NA non-coding upstream 106650 20702205 ~ 20709007 (-)
G233955 NA non-coding upstream 134267 20729822 ~ 20730058 (-)
G233957 NA non-coding upstream 136423 20731978 ~ 20732335 (-)
G233513 LOC106561082 other downstream 38449 20551783 ~ 20551997 (-)
G233052 LOC106605397 other downstream 833828 19756204 ~ 19757908 (-)
G232980 NA other downstream 941817 19648086 ~ 19648629 (-)
rims2a LOC106579570 other downstream 991345 19416054 ~ 19652601 (-)
LOC110511176 LOC106579058 other downstream 1308308 19065512 ~ 19282368 (-)
G234224 LOC106605437 other upstream 583042 21178597 ~ 21180682 (-)
LOC110513321 LOC106580205 other upstream 849933 21438546 ~ 21455972 (-)
G234600 NA other upstream 874106 21469661 ~ 21469945 (-)
G234621 NA other upstream 902853 21498408 ~ 21498832 (-)

Expression


Co-expression Network