trnat-ugu-32


Basic Information

Item Value
gene id trnat-ugu-32
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20592056 ~ 20592128 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnat-ugu-32
GGCTCCATAGCTCAGTGGTTAGAGCACTGGTCTTGTAAACCAGGGGTCGTGAGTTCAATTCTCGCTGGGGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnat-ugu-32 True 73 mRNA 0.55 1 20592056 20592128

Neighbor

gene id symbol gene type direction distance location
trnat-ugu-31 NA coding downstream 8704 20583280 ~ 20583352 (-)
LOC110512912 LOC106579937 coding downstream 10524 20563648 ~ 20581532 (-)
LOC118944500 NA coding downstream 37189 20552753 ~ 20554867 (-)
LOC110512719 LOC106579893 coding downstream 316748 20272374 ~ 20275308 (-)
LOC110512703 LOC106579851 coding downstream 321684 20262526 ~ 20270372 (-)
glipr2l LOC106605424 coding upstream 56250 20648378 ~ 20652052 (-)
si:dkey-12j5.1 LOC106580016 coding upstream 335826 20927954 ~ 20968368 (-)
LOC110513019 LOC106580057 coding upstream 499659 21091787 ~ 21100107 (-)
LOC110513063 thbs3 coding upstream 520094 21112222 ~ 21133895 (-)
LOC110513075 NA coding upstream 543949 21135542 ~ 21152356 (-)
G233514 NA non-coding downstream 39606 20552215 ~ 20552450 (-)
G233491 NA non-coding downstream 58560 20529880 ~ 20533496 (-)
G233479 NA non-coding downstream 83691 20506750 ~ 20508365 (-)
G233478 NA non-coding downstream 86430 20505226 ~ 20505626 (-)
G233474 LOC106579923 non-coding downstream 90709 20501109 ~ 20501347 (-)
G233914 NA non-coding upstream 62069 20654197 ~ 20654460 (-)
G233917 NA non-coding upstream 64073 20656201 ~ 20656503 (-)
G233942 NA non-coding upstream 110077 20702205 ~ 20709007 (-)
G233955 NA non-coding upstream 137694 20729822 ~ 20730058 (-)
G233957 NA non-coding upstream 139850 20731978 ~ 20732335 (-)
G233513 LOC106561082 other downstream 40059 20551783 ~ 20551997 (-)
G233052 LOC106605397 other downstream 835438 19756204 ~ 19757908 (-)
G232980 NA other downstream 943427 19648086 ~ 19648629 (-)
rims2a LOC106579570 other downstream 992955 19416054 ~ 19652601 (-)
LOC110511176 LOC106579058 other downstream 1309918 19065512 ~ 19282368 (-)
G234224 LOC106605437 other upstream 586469 21178597 ~ 21180682 (-)
LOC110513321 LOC106580205 other upstream 853360 21438546 ~ 21455972 (-)
G234600 NA other upstream 877533 21469661 ~ 21469945 (-)
G234621 NA other upstream 906280 21498408 ~ 21498832 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) trnat-ugu_9 NA coding NC_047598.1 CM018544.1 27624736 ~ 27624808 (-)
mexican tetra (Astyanax mexicanus) trnat-ugu_71 NA coding NC_035899.1 CM008302.1 6983771 ~ 6983843 (-)
mexican tetra (Astyanax mexicanus) trnat-ugu_9 NA coding NC_035899.1 CM008302.1 6923421 ~ 6923493 (-)