LOC110512944 (LOC106605423)


Basic Information

Item Value
gene id LOC110512944
gene name LOC106605423
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20629412 ~ 20647074 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593039.2
ACTCATAGCATCATCACGGCTCTGCTCTGCTGCACCACAGAGAGAGGCatgcactctctctcactctctaacacacacacatatagacacacgtGTGCTGCAGGAGATCTAAGTGCCAGGTCGCTGAgcattcaccctctctctctctctctctctctctctctctctctctcgctctctctctctctctcgctctctctgcccctcccgaTACTGCGCACTCTCTCTCGGTTCACCTTGGCTACTTGGTGGTGTGGAGTTATTGTTGCGTCAGAACCAGAGAGATCCAGAGACAGCCATGCCGGGGGAGAGCTCTCAAAGATCTGTCCCCAAAGAAAGACATCCGGAGCTTGGAGCAGAGCAGACAGGCCTGCCTGAACCAGACATGACCAGACATGCCTCCACTGATTCCACCCCTAGTGACAGCGGCTCTAGTCCCTCCCCCAGCACCCCTCAGAAGCTGCTGCCATCATGCACCTCTCCGTTCGGGCCACGGCTGGTTCGGGCCACACCTAGCTCCTCCGCGACCCCGCGACCCCAGCCTGAAGGTTCAGACCGTCGCCACAGTAACACGGTCCGACTTAGCGGGACGTTTGGAGGTCACGGACCCTGTGGACGCCGCAGCGGACCCGTGAAGATGGAGAGAATCaagGTTCTGATGGGCTCAGAGGTGGAGAGCGACTACAAGGAGCCAGAGAACATAGACACACGGGTGGTTATGGGCCAGGAAGCCCTGCTCAAGACAAAGAAAGCCCTGCTCAAGACAAAGAAAACCCTGACAGGGAAGTGCCCATGCGAGCAGAGCAGCCAGGCGATACCCCTGGCTGGAGGCCCAGTCTTGGAGGTCCCTAAGCCTCCCTTAGAGCCCCAGGCCGAGGCTGGAGAAAAGGCCCAACTGGACACAGGGCAGGAGAGAGACAATTCACCTCTGACCCCAAAGATGGAGCAAGAACAGGAGAGAAGCCCCGTCCTGCCCATTggccctctcctcacccctctcctaacCCCCCTcatccctgcctcccctccctcctcagaGCCAGTCACAGTGGATGTTAGTTTGACGGGCAGCTCAAGCCCTTTGGAGGCAGGGCTGTCTCCCTATGGTGAAATGTCTTTTGTATGTTCCATGTATGCCATGCCCTCCCTGTCCGAGCCAGCCTATCCCCCTGCTATCCTATCCTTCACTGAGCCGGCCTATGCCGTGGACCCTCTGAGAGTGGGTGTTCCCTCGTCCCTGGATCCTGACCTGTACTACACCGCACCCTCCACCCCCATCAAGATGGCTGCTCGCCCCTTACACCTCAAACACCGCTCTTACCCCGGctccccagcctctcccctcTCACCAAACTCGGACAGTGAGGACCTGTGCtcccccctcacttccccctCTGGCTCCTACGTCACGGCGGAGGGGGGCAGCTGGACCTCTTCCACCTCCCCCTGCACCTCCCCCAATCTTCTCCTGGCAGAGGAGGTGCAGGAGGCACCTGCATGCTTTGTCAGCTCGCTGTCCGAAATCGGAGACGAAGTGGGGGAGGATAGGGGAGCAGtaggggagagggcagaggaaaagggaggaggagcagcagagtGGCGGTTCTGCCTCTATAAGGGTCTAGCAGAGACTGTGatcctggaggaggaggaggtactgagAGGGGAGGTAAGGGGGAGAAGGAGTGAGGAAGTGACAGTCTCAAGGGGTAGCTGTCGCCCTCGCTGGGTGACAGAGGACACTTCCCCATTGAGGAGCAGCAGCGGCAGAAGCACCGACTCCCAGGAAGATGGAGGGGAGTCCGAGGGTTCGCTCTGCCCAGCAGAGGATGCTCTGGCTGGGGGACAGCAGTACTCAAGTCCCCTGCTGCAAAGAGGCCTGGAGCTGGAGCTGCAGGCCTGTGTGTCTGAGGAGCTTTACCCTCCCATTACCAACCCAGATGATGATGGAGCAGACTCCCCACGGCTGACCTCCATCTCCTTCCCCTTTGCCCCAGACATGGGGAACCTAAGCCCTCACACCTCCAGCGTCAACCCTGCCTCCTCCAACCTTACCATGGACACCTGCTCTCCAGATGTGTCAGACGGGGATAACTCCAGCCCTTACGGAGAGATGGGTACCTTCCTGCTGTTCCCAGGCTCCTACAgtgatgatggagagatggaggaagaggagagtatGATCCCAGCCTCTCTGCTTAACTTCCCCCTCCACACCAGTCTCCTCTTTCAGGCAGACTCCATGGAGATCACTCTCTTCCCCACAGAGGAGGggaatgagggaggagagggaaacgaCAGGAACGATGTGGATGCGTACGCGgccggagaggaggagggggacgtggaggatgatgatgaagatgatgaggaAGAAGTGGAGGctaaggtagagatagaggaggCTAAAGTAGAAATAGTGATAGAGGAAGAGGTGGATGAAGAGGAGGGTGAGGAtgttgaggatgaggaggaggagggtgagggtaAGGCTGTAAATGACCCAGCTGAAGAGGACAACTCGGCCTCCTTCCTTCATTCACTGTCAGAAACTTCCATCAACGAAGGGCTGGATGAGTCCTTCTGTTTCCATGACGACACTGACGACTCACTAGACTCCGCCTCTTATAATGGCGAAGAGGATGAGCGACTGTACAGcacagagagacatgctgaaccaCCCACAGGACCACCCACAGGACCACCCACAGGATCACCCACAGAACCACACCAAGCCAAACCTCAGCCTAAAACCAGACCAGAGGCCTACAGCACTGAACTGTCCCAGTCCCAGAGCAGACTTAGCCTAATCAATCCCCCAGGTGACAAAGAGCCCCGGCCTGAGGATCCTCCAGGACCTAGACCACCACAACCTGCACTTGCACCTGCCCAACCTGCGGAATCAGCCCACCCCGAGTCCTCCAACAGCAGTAGTGGGAGTGAAATGGAGATCTCCTCAGAGTCCTCTGACCCTCCTGTCCCCGCTCCTTCTCAGGAGAGCCCTTATGTCTCTACCCTTACCCCTAAACTTTCTACAACCCCTTACCGTGCCTTCACTACCCCAAAGACTACTCCTGCTACCGTGTCAACCCCTAAAACCAAGCCTgaatctctctctaaccccaacacTAACCGTGCTCCTGCCCCTAATGCTAAATCTGCTACTGTTTGTaccactaacactaaccctgctACAGCCTCAACCCCACAAAATAATTATGCTACTTCCTCAACCTTCAAAACTAACTCTGCTACCGTATGTACTCCTGAAATGAACCCTGCTACGGTCTCTACCCCTAACACTAACAGTGCTCCTGCCCCTAACGCTAAATCTGCTACGGCCTGTaccactaacactaaccctgctACAGCCTCAACCCCCAAAACTACCCCAGGTACATGCTCTACCCCAAACCCCGCTGCTACTCCTAAAACTAACCCTGCTGctactcctaacactaaccctgctgCTACTCCTAGCACTAACCCTGCTGctactcctaacactaaccctgctgctactcctaacactaaccctgctgCTACTCCTAGCACTAAGCCTGCTGCTACTCCTAACACTAAGCCTGCTGCTACTCCTAACACTAAGCCTGCTGCTACTCCTAAAAcgaacactgctgctactcctaacactaaccctgctgCTACAATCGAGGAGACAGCGTCCCACAACAATCCTGTCATCCTGGCAACCCAGCCATCCCATAACAGCCCTGTGACCCTGGCAACAGGAGCAGGGCAAGCCAAAGCAGTTGCAGAGGAAGTACAGGCTGGTACGGTGAGAGAGGAGGACAAAAGGAGCAgtgcaaagagagagaaagacaaacagagcagtggggagagaggaaaggacaaACAGAGCGgttgggagagaggaaaggacaaACAGAgcggtggggagagagggaaggacaaaCAGAgcggtggggagagagagaaaaatgaacAGAGCACAGAGACTTCAGACGAGGACcacacagagcagacagacagagactcgTTCAAACTACTCATTAAGCCACGCCCCTCTAAGTCAGACACACCCCGGCCTAAACAGAAGACCTCTGAGCCCCGTAAGCCGCTCCCACGTGTGTTTGGGGTGGCAGCAGCTTCAGTCCGGTCCAAACCGCTTCTGGTGTCAGTGCTGGAACTGGACCAGAAGAACGCGAACAGCAGCGCTGAAGGTGTGGACTCCCATCAGGTCCTTGAAGGGACCACTGCCACCAACGACCTGAACAAGGGGGTCCCTCTGCTCACATGCCCGAAAGAGCCTAACCCCAGCAACAtccctgtctcctccttcccTGAGAGCTCACCTGACCTGACTGAcaacctgtccctgacccctGACATCTGCCCATGTGACCCAGCCCAGGAGAACCTGAGGGAGAACACCCTGAGCACTGAGGACGGGGGCCCTGGGGCCCTGGGCTCCCCTCACACACCCCTGGCTGTCTCTCCCAAGAGGGAGAACTCAGAGACAGAtgcaggggggaggaggggggatgggggcTTGAGGGCTGATAGGAGGGGGTTAGGAGCAGAGTCCGGGTCCTGGGGGGCAGGGGaggccctatctctctctctggggcaggGCTGTGGGTTGGAGGCACAGAGCCTATTACTGTATGAGGTGGAGGGACATACGATTGGACAGACAATTGGACAGAAGATTGGACAGACACTCTCCGGGCTGCCCAATGTCGGCACAGATGAGGATGTGGTGGGTGATATAATGGGGGACGAAGAAGACAACAACAGCCTGTGTGGTCGGCCAGACAAGATGGCAGATGTCGAGCTTGTGGGAGAGGGAGTGCCAGAGTCCAACCTGTCCAGCTGGAGGTCCATCGAGGAGATATcagaggcagggggaggagaggacggaAGCTCCCAATTCCCAGAGGATGATGTCAGCAACCTGCAGAGTCACCCGGAAAACAAGGAGGAGcaggaaaacaacaacaatgtcTCAGTGTTCCTTTCCTCTGGAATGCCAACCTGTATGACTCTGAATGCCCTGTCAGAGGACGTGAGACACCAGAGCCAGAGTGTGTGTCTGAGGGCTTCTCTCTCAAACATACCACTCACAGAGGTGAGATCACAGGCTGCTGCAGCCTCCGATAGGCCATCAACATCAACTGACAGCTCAACACACCAATCAGACATAAGACAACCTTCCTTGTCCATGGAAAGCCCTGGGCGTGTCTCACCACCAGGGGGTAAACCACAGACTGTctcagaccagagccctggttCAGTAGAGGCAGCCATTTCCAGACCCAACAGTAACACAGATATTAACCCAGCAGTCAAACAGGCAGACCCAGCTCTGTCTCTGCTGGGTGGGGCATTTGGATCCTTCAGCCATAAAATCAGACCAAGCAACCCCAAGTCAGGCAGACTGTCCCAAGAAACTTCCCGATCACTGAAGAAAGACACAGTAGAGAATGTCCAAGTTTCCCAAGAAACTTCTCTCTCAGTGGGCAAAGACACAGTAGAGAAGGTCCAAATTTCCCAAGAAATTTCCCCATCAGTGGGCAAAGACAAAGTACAGAAGGTCCAAGTTTCCCAAGAATCTTCCATATCAGTGGGAAAAGACACAGTAAAGAAGGTCCAAGTTTCCCAAAATGTTTTCCAATCAGTGGACAAAGACACAGTAGAGAAGGTCCAAGTTTTTCACGAAACGTCCCCATCAATGAGCAAAGACATAGTAGAGAATGTCCAAGTCTTCCAAGAAACTTCCCTATCAGTGGGCAAAGACACAGTAGAGAAGGTCCAAGTTTCCAAAGAAACTTCCCCATCAGTGGGCAAAGACACCGTGGAGAAGGTCAAAGTATTCCAAGAATCTGCCCTATCAGTGGGCAAAGACCCAGTAGAGAAGGTGCAAGTTTCCCAAGAGACTTCCCCGTCAGTGAGCAAAGACACAGTAAAGAAGGTCAAATTTCCCCAAGAAACGTCCCCATCAGTGGGCAAAGACACAGTAGAGAAGGTCCAAGTTTCCCAAGATACTTTCCCATCAGTGAGCAAAGACACAGTAGAGAAGGTCCAAGTCTCCCAAGAATCTTCCCTATCAGTGGGCAAAGACACAGTAGAGAAAGTCCAAGTTTCCCAAGAAACTTCCCCATCAATGGGCAAATACACAGTAGAGAAGGTCCACCTTTCCCAAGAAACGTCCCCATCAGTGGGCAAAGACACGGTAGAGAAGGTCCAAGATTTCCAAGAAACTTTCCCATCAGTGAGAAAATACACATTAGAGAAGGTCCAAGTCTCCAAAGAATCTTCCCTGTCAGTTGGCAAAGACACAGTAGAGAAAGTCCACGTTTCCCAAGAAACTTCCCCATCAATGGGCAAATACACAGTAGAGAAGGTCCAAGTTTCACAAGAAACTTCCGCATCAGTGAGAAAAGACACAGTAGAGAAGGTCCAAGTTTCCCAAGAAACTTCCCAATCAGTGAGTGATGATACAGTAGAGAAAGTCCAAGTTTCCCAAGAATTTTCCCCATCAGTGAGCAAAGACACAGTAGAGAAGATCCAAGTTTTCCAAGAATCTTCCCTATCAGTGGGTAAAGACACGGTAGAAAGTGTGAAAAAACTCTGTTCCCAGCCTCAGCCAGAGGAGACAGAGCCACAGACGGTGAGCCAAAAAGAAGGTGGTGGCGGTCAGAAGACTGACAGGCACATTGACCAACCAAAGACGACTGGGGCCTTAGAAGAGCAGGAGAGCAGTGTTTGTATCTCAGGcgaaagagaggtggaggagattGCAGAGGAGAGATTCTCTCCAACAGAGAGTGTTCCAGAACCTGCACAGCGTCAGACACCCGAGGGAGAGCTAAGCACAGAGAAAGCCATCACTCCTCCTCagccagggaggagagggaagcagAGCAGAGACAGACCCAGTCAGCCGCGCAGACAATCTCCGTCAGGCTCTGGGTCTGCTGATCACCCACAGGAACCAGCTCTCACTGCCAAGACCCTAGAAGACACCTCCCCACCAGGGAAGCAAAAGAATAAGAACACGAGGGGACAAAAATCTGCTGCAGATACCAGACAGAGGACACCTGTGAAGGGCAAACCTGAGGCAGAGtccgagaggagaggggaaaacagaaacaTCTCCAGATCCCCGACTTCCCCTAGTCCTACCAACCTCTGCCctatctctcctgctctcctaCTCAACCAGGAAGTGACCATGGAAGTGCACCAGGAAATGCTTGACAACAGGCCGCTGCCTGGTTGCCAGACAGAAAGCAGGAAGGACATCAACGATAACAATGTGGGGAGTGGCCATGCCTCCCCTACAGAACAGAATAGatcttcttctcctccacctcttccctcctcctctcctccccatctctccccctctcctctctcctcctctcctccccccagtaCCTTCACAGTGCAGCCAGATGAGGACCTCCCCACCCCCATACAGGAGTCCCAGCCTCTCCTCACCACAGTCCAGCCTGTCACCCCACTCCTAGACACCCAGCCTCAATCAACCAATCTTCAGGCAGCCTCCGCAACCCTTTCTACTACCCCTATCGCCCTTCCTAAGCATCCCCCTATACCCACTGAAAGTGTCCGTATGTCCCCTACCCCCTACTCATTCTCATCTCCACCCACGTCAGCCCTGCCCTCGACCCTCAGCCTTACCCAGCCCACCCAGGAGTCTTTGCCACGGCTGGAGGCTCCAACCACAGTGCCTGTCCTAGACATCCGCTGCCAAGCCCAGCCCCAACCAAACCTCCTCACCAAGCCCAACAGACAGATCAAGCCAGTTCAGTCACAAAGCCCACAGGACAGAGATGGGATGGACACAGACAGTGATGATGACACTGCTGTTCCTCTACGACGTCACATGACTCAGCCCAGGGGGATTGTTGGAAACCCTTCTCATAAAGAGTCTGGCTCCTCCAATCAGCGAGAGATACTGCTTCACTCCTCCCGCCAACCAACTGAGAGACAGATAGACTGTCCAATCAGCCACAAGGATTCACAGGAGCTGGAACTGTCCTTCAAATACAACTtGGGCTCCTGCAATGAGTCGGAGAGTGAGGGATCAGTGCCAGAGTTGGAAGAACCAGAGGTGGTGCCACTGAGATCCTCAGAACCCCAGcccatcTCTCCTGCTGATGATGGGATTAACAGACCTAAGCAGAGCCGCAGTGAGAAGAAGGCCCGCAAGgccaTGGGTAAGCTGGGCTTGCGGCCGGTCCACGGTGTGACCAGGATCACTATAAGGAAGTCGAAGAGCATCTTGTTTGTCATCAGCAGACCTGACGTCTTCAAGAGCCCCGCGTCAGACATCTACATCGTGTTTGGAGAGGCCAAGATAGAGGACCTGTCTCAACAGGTGCACAAGGCAGCGGCAGAGAAGTTTAAGGTCCCGGTGGAGCCCTCCCCACTGGTGCCCCCTGCACCACCCAGCCTCACCATCAAGGAGGAGAgcgaggaagaggagGTGGACGAGGGAGGTTTGGAGCAGAGGGATATAGAGCTGGTGATGGCCCAGGCTAACGTGTCCCGTTCCAAAGCTGCCCACGCCCTCAGACACAACACCAACGACATCGTTAACGCCATCATGGAGCTGACCATGTgagaggaccccccccccccaaaagcatAAATGCCAGTGTCACATCTGTATCGCTGCTATGTTGCATTCTCCTTACCTGCTAATAAACAGTCTGTTATAACCACACTAGTGGGCGATACTGTTAACCACCCTTATACTGCACGTCATGTATGTAGTGAAAATGGGGCATTTTACAGACAGTCGCTTTTATTACATTAAAACAAACAGAATACAAAACAGACAAACAAGTGCTCAGTTCAGAAAAAAGGTCAGTTTAAATCATGCTCACAATGAAtaaaacacatacatacagtaccattgaaaagtttggacacctactcattccagtgtttttctttattttctacattgtagaataatagtgaagac

Function

NR:

description
PREDICTED: NAC-alpha domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593039.2 True 8998 mRNA 0.54 10 20629412 20647074

Neighbor

gene id symbol gene type direction distance location
tbrg4 LOC106579951 coding upstream 7347 20605165 ~ 20622065 (+)
LOC110512899 LOC106579931 coding upstream 98073 20509292 ~ 20531339 (+)
LOC110512886 LOC106579923 coding upstream 120981 20490868 ~ 20508431 (+)
LOC110512870 LOC106605416 coding upstream 155886 20446669 ~ 20473526 (+)
LOC110512801 LOC106579904 coding upstream 189394 20354417 ~ 20440018 (+)
LOC118946510 NA coding downstream 55130 20702204 ~ 20709034 (+)
LOC118936416 steap4 coding downstream 71783 20718857 ~ 20758800 (+)
LOC110503853 LOC106579991 coding downstream 111735 20758809 ~ 20783316 (+)
LOC118946512 LOC106579994 coding downstream 199923 20846997 ~ 20911413 (+)
mindy3 LOC106580009 coding downstream 321370 20968444 ~ 21022357 (+)
G233550 NA non-coding upstream 2045 20627031 ~ 20627367 (+)
G233546 NA non-coding upstream 9587 20608900 ~ 20619825 (+)
G233515 NA non-coding upstream 76089 20552815 ~ 20553323 (+)
G233508 NA non-coding upstream 80396 20548810 ~ 20549016 (+)
G233507 LOC106566552 non-coding upstream 80747 20548406 ~ 20548665 (+)
G233644 NA non-coding downstream 127821 20774895 ~ 20778525 (+)
G233687 NA non-coding downstream 266080 20913154 ~ 20915815 (+)
G233754 NA non-coding downstream 280824 20927898 ~ 20932727 (+)
G233753 LOC106580016 non-coding downstream 316682 20963756 ~ 20964155 (+)
G233820 NA non-coding downstream 449923 21096997 ~ 21100178 (+)
G233545 NA other upstream 20687 20608293 ~ 20608725 (+)
G233521 LOC106579937 other upstream 63700 20558776 ~ 20565712 (+)
LOC110512505 LOC106579702 other upstream 784760 19821356 ~ 19844652 (+)
G231983 LOC106597055 other upstream 1395117 19226366 ~ 19234295 (+)
G231438 NA other upstream 1777430 18851249 ~ 18851982 (+)
G234322 dcst2 other downstream 617001 21264075 ~ 21264506 (+)
G234340 LOC106580151 other downstream 639652 21286726 ~ 21287002 (+)
kiaa0319 LOC106580477 other downstream 1370520 22017579 ~ 22037490 (+)
LOC110503910 LOC106580557 other downstream 1411468 22057484 ~ 22068080 (+)
G235426 LOC106581355 other downstream 1657419 22303641 ~ 22304906 (+)

Expression


Co-expression Network