glipr2l (LOC106605424)


Basic Information

Item Value
gene id glipr2l
gene name LOC106605424
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20648378 ~ 20652052 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593053.2
ttttttaaattaaatgttcTTGAAAATCTCagttttggacgagactgactttatgaccagaATGATCCtactatttacactttgtagtcaatttggACACTAGAATACATTTTTCTGACtaatatcgatgccacataggctcACCGTAGTAAAACTGTGTAAAAGTGCTTCTAAACAGTTAAACTGCTCTTAATTTAGTTAGGGTAGAATGTCCAGCTCACATTTCAAGCAGAAAGCAGGAATCTCAGGCCATAAAAGGGCATGTGTCTCATAGagatgatgtcatcagaacagccATGCTGGGTCTCCCCTTTcagttacacagagagagggagcctgtgtgttacagagggataaggggagagggaggataatGTGTGTGTGGCCAAGGAAAAGGCAGGGTGTTTAAGAGTGAGAGAGGACAGAAGCAGAAGTTTTGAGAAAGACTAGTTTACTAGAGGGAGAAGTGTGAGCGAGAGGAACAAAGGCTACGGAGAAAAATAGGAAtacagaaagggagagggagagagggacagaaacaaagTTATAGCAGCTGTTTCAGACCGTCAGAGAGCGGACTGAGCCAAAGGGAACAAGAGAGAGTTTCTGTGTCATGGGCAAATCAGcttctaAGCAGTTTTCGGAGGAAGTGTTGCGGAGTCATAATGAGTATCGTAGGAAGCACCAGACACCCCCTCTGAAGCTGAGCAGCAAGCTGAGTAGCGATGCCACTAGGTATGCTGAGTCTCTGGCCAGCACACGGATCCTGAAGCACAGTGTTGAGTCCAGTAAGGGGAGCTGTGGCGAGAACCTGGCCTGGGCCTCCTATGACCAGCCAGGGAAGGATGTGGCTGACCGCTGGTATGACGAGGTCAAACAATACAACTTCAACCGCCCCGGCTTCTCCTCTGGCACAGgtCATTTCACAGCAATGGTGTGGAAGGGCAGTAAGAAGCTGGGTGTGGGGAAGGCCAGTGCGCCAGATGGCTCGTCATTCGTGGTAGCCAGGTACTTTCCAGCAGGGAACATCACCAACCAGGGACACTTTGACAACAACGTCCTGCCGCCCAAGGACTAAGGAACATACTGACCCATCCAAAAGACATTTGCACTTTGACTTGTGACCTTGActtacatgtatgtatgtatgtatgtatgtgtgtatatgtatgtatgtatgtatgtgtgtatgtatgtgtttgtgtgtgtgtatgtgtgtgtgtgacttaacaaatgaatgaacaaaaatataggcACACCATTGACCAAACCATGCCAGCTGTGTCTTCCGGAGGTGTACCAGCCACCCCACTGGGTTTCGACCTACTCATTCCATCGATAGTGGGAGTAGGGATTTTACACATAGTAAAATAAtttctggtttaaaaaaaaatagtacCAGTcaggtttggacacctactcattcaagggtttttctttattttactattttctacattgtagaataacagtgaagacctcccaactatgaaataacacatatggaatcacgtagtaa
>XR_005041383.1
tttttttaaattaaatgttcTTGAAAATCTCagttttggacgagactgactttatgaccagaATGATCCtactatttacactttgtagtcaatttggACACTAGAATACATTTTTCTGACtaatatcgatgccacataggctcACCGTAGTAAAACTGTGTAAAAGTGCTTCTAAACAGTTAAACTGCTCTTAATTTAGTTAGGGTAGAATGTCCAGCTCACATTTCAAGCAGAAAGCAGGAATCTCAGGCCATAAAAGGGCATGTGTCTCATAGagatgatgtcatcagaacagccATGCTGGGTCTCCCCTTTcagttacacagagagagggagcctgtgtgttacagagggataaggggagagggaggataatGTGTGTGTGGCCAAGGAAAAGGCAGGGTGTTTAAGAGTGAGAGAGGACAGAAGCAGAAGTTTTGAGAAAGACTAGTTTACTAGAGGGAGAAGTGTGAGCGAGAGGAACAAAGGCTACGGAGAAAAATAGGAAtacagaaagggagagggagagagggacagaaacaaagTTATAGCAGCTGTTTCAGACCGTCAGAGAGCGGACTGAGCCAAAGGGAACAAGAGAGAGTTTCTGTGTCATGGGCAAATCAGcttctaAGCAGTTTTCGGAGGAAGTGTTGCGGAGTCATAATGAGTATCGTAGGAAGCACCAGACACCCCCTCTGAAGCTGAGCAGCAAGCTGAGTAGCGATGCCACTAGGTATGCTGAGTCTCTGGCCAGCACACGGATCCTGAAGCACAGTGTTGAGTCCAGTAAGGGGAGCTGTGGCGAGAACCTGGCCTGGGCCTCCTATGACCAGCCAGGGAAGGATGTGGCTGACCGCTGGTATGACGAGGTCAAACAATACAACTTCAACCGCCCCGGCTTCTCCTCTGGCACAGgtCATTTCACAGCAATGGTGTGGAAGGGCAGTAAGAAGCTGGGTGTGGGGAAGGCCAGTGCGCCAGATGGCTCGTCATTCGTGGTAGCCAGGTACTTTCCAGCAGGGAACATCACCAACCAGGGACACTTTGACAACAACGTCCTGCCGCCCAAGGACTAAGGAACATACTGACCCATCCAAAAGACATTTGCACTTTGACTTGTGACCTTGActtacatgtatgtatgtgtgtgtatgtatgtgtttgtgtgtgtgtatgtgtgtgtgtgacttaacaaatgaatgaacaaaaatataggcACACCATTGACCAAACCATGCCAGCTGTGTCTTCCGGAGGTGTACCAGCCACCCCACTGGGTTTCGACCTACTCATTCCATCGATAGTGGGAGTAGGGATTTTACACATAGTAAAATAAtttctggtttaaaaaaaaatagtacCAGTcaggtttggacacctactcattcaagggtttttctttattttactattttctacattgtagaataacagtgaagacctcccaactatgaaataacacatatggaatcacgtagtaa
>TU267325
aaggggagagggaggataatGTGTGTGTGGCCAAGGAAAAGGCAGGGTGTTTAAGAGTGAGAGAGGACAGAAGCAGAAGTTTTGAGAAAGACTAGTTTACTAGAGGGAGAAGTGTGAGCGAGAGGAACAAAGGCTACGGAGAAAAATAGGAAtacagaaagggagagggagagagggacagaaacaaagTTATAGCAGCTGTTTCAGACCGTCAGAGAGCGGACTGAGCCAAAGGGAACAAGAGAGAGTTTCTGTGTCATGGGCAAATCAGcttctaAGCAGTTTTCGGAGGAAGTGTTGCGGAGTCATAATGAGTATCGTAGGAAGCACCAGACACCCCCTCTGAAGCTGAGCAGCAAGCTGAGTAGCGATGCCACTAGGGAAGGATGTGGCTGACCGCTGGTATGACGAGGTCAAACAATACAACTTCAACCGCCCCGGCTTCTCCTCTGGCACAGgtCATTTCACAGCAATGGTGTGGAAGGGCAGTAAGAAGCTGGGTGTGGGGAAGGCCAGTGCGCCAGATGGCTCGTCATTCGTGGTAGCCAGGTACTTTCCAGCAGGGAACATCACCAACCAGGGACACTTTGACAACAACGTCCTGCCGCCCAAGGACTAAGGAACATACTGACCCATCCAAAAGACATTTGCACTTTGACTTGTGACC

Function

NR:

description
Golgi-associated plant pathogenesis-related protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593053.2 False 1519 mRNA 0.45 5 20648378 20652051
XR_005041383.1 False 1484 mRNA 0.45 6 20648378 20652052
TU267325 True 667 TUCP 0.51 4 20648771 20651696

Neighbor

gene id symbol gene type direction distance location
LOC110512925 NA coding downstream 52823 20590446 ~ 20595555 (-)
trnat-ugu-32 NA coding downstream 56250 20592056 ~ 20592128 (-)
trnat-ugu-31 NA coding downstream 65026 20583280 ~ 20583352 (-)
LOC110512912 LOC106579937 coding downstream 66846 20563648 ~ 20581532 (-)
LOC118944500 NA coding downstream 93511 20552753 ~ 20554867 (-)
si:dkey-12j5.1 LOC106580016 coding upstream 275902 20927954 ~ 20968368 (-)
LOC110513019 LOC106580057 coding upstream 439735 21091787 ~ 21100107 (-)
LOC110513063 thbs3 coding upstream 460170 21112222 ~ 21133895 (-)
LOC110513075 NA coding upstream 484025 21135542 ~ 21152356 (-)
LOC110513123 LOC106580095 coding upstream 516088 21168140 ~ 21172480 (-)
G233514 NA non-coding downstream 95928 20552215 ~ 20552450 (-)
G233491 NA non-coding downstream 114882 20529880 ~ 20533496 (-)
G233479 NA non-coding downstream 140013 20506750 ~ 20508365 (-)
G233478 NA non-coding downstream 142752 20505226 ~ 20505626 (-)
G233474 LOC106579923 non-coding downstream 147031 20501109 ~ 20501347 (-)
G233914 NA non-coding upstream 2145 20654197 ~ 20654460 (-)
G233917 NA non-coding upstream 4149 20656201 ~ 20656503 (-)
G233942 NA non-coding upstream 50153 20702205 ~ 20709007 (-)
G233955 NA non-coding upstream 77770 20729822 ~ 20730058 (-)
G233957 NA non-coding upstream 79926 20731978 ~ 20732335 (-)
G233513 LOC106561082 other downstream 96381 20551783 ~ 20551997 (-)
G233052 LOC106605397 other downstream 891760 19756204 ~ 19757908 (-)
G232980 NA other downstream 999749 19648086 ~ 19648629 (-)
rims2a LOC106579570 other downstream 1049277 19416054 ~ 19652601 (-)
LOC110511176 LOC106579058 other downstream 1366240 19065512 ~ 19282368 (-)
G234224 LOC106605437 other upstream 526545 21178597 ~ 21180682 (-)
LOC110513321 LOC106580205 other upstream 793436 21438546 ~ 21455972 (-)
G234600 NA other upstream 817609 21469661 ~ 21469945 (-)
G234621 NA other upstream 846356 21498408 ~ 21498832 (-)
G235092 LOC100194668 other upstream 1086793 21738845 ~ 21743411 (-)

Expression


Co-expression Network