LOC118946510


Basic Information

Item Value
gene id LOC118946510
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20702204 ~ 20709034 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041385.1
AGGAAATTATGATTAatatgactgaacaaatcattttaaatggaactgtaagtaaacttatactctgttataTTATGTTTAATAggcaatatgagttcataagaagaaaTTGTGTGACAAGAGAAAGGAGTAATAAAatgttaatgaacaccattccaactgggcaggaacaaatgggttgtggactgtgtaaacacataaggtcgttagcctatggttgacccaacctgaaacttagctctggggtttttagataaggcagtgagtgcattcctagggtttctgttaattaaaactgtcagttcagtggtgatcgataatgttgaggggtcaaaagttatctgggagtgtgttagtaagttagaatgaacttttcaccttacTTTGTCCTGTCGAGAGGAGGGGGTTCGGTTAAGGCAGtgaaatgacgtcatgatctGTATTTAAactgatgcatgtgtttgagtgggagcgcgctccgagaataaattctattacctattatttaaagactggtctgcgtctattttatgcaaacaagaaatctTACAAATAATCATAAAATAGATGAAGGGCTTTCAATTGATGAAAGCACATTGGCTTAATTAAATTATACTAACAATTGGTCCTTCGAGTGGATTCCACAAACTTCTCTGTCGTCCGAAGGGAAAAGCTGAAAACCGTGCGCACGGACGAGGTTGGACTCGTAGTTTAAAAGTCCTGGCCTCCAGCAGAGGTTTAATAACAGGCCGGTATATATATCTTAGGTCGACAGAGAACGTGACGGAATCGAACCGGcattgcttttcccagtctaCAGGACGAAGGTAAATAGTCTTTATTCTCGAATTTGGGAGGAATTATTTAAGATATTTTTGATTGAAGGTGCTAAAGGAGTTTGGATTTAATCAATGATAGTTGCTTGAAtattttgaacaaatacaatgggTTTCTACTTTGTGGGTAACCAAAATCGATAGGAAGGAAGCGAGTCTGAAATGACTCGTGGTAAGGTGCACTACCGAAAGTAAACTAGGACTTAATCAATCTTGGCCTTGCAAACCGAAAGATTTTTTAAGGGTGGGATATAGTAAGTATTGTTAGATGGGACGTTCATTCTGTACAAATAGGATAGCCATTAATTCAATAAACATACCTAAATAAAGTTTTTACCTAATAGTCTATCTGTAATATGGGAAGTAGTCTGACTATGAAAAGTATCAGATAGATATGTTAAAACAGGTGAGGATAAATTAGGCTTGGTGAGGAGGCAGAGCAATTCTAGGCGAACCTAATCACTGAACCCATTCAATACTGAAAGAGATTAATatccagggaggagagggaaactaATTCTAGAAGTAGTGAGATATGAGATATTAATTAACGTTGAAAGTCCCAAGGAACAATAGTTTATAATGAGCTTATAATTGTATACGGGTGAAATGTAATGTCCAAATCAAAAGTCAACTATAGATGAGGTTTCCAGGAAGGAGAATACATACAGATTATCATTAAAGAGAGGATCTGTACCCCCTAATAGAGTTACCCAATCCCCAGGCGGGGGAGGGAGATCATGAACCTATTGTTCGGGTCTATAGACCTTGGACGCAGAGAGACGTAGAAAAGGCAGTAGAAGGTATCCCCCACCCGAAGACAGGAATGGCAGGTTTTGAGAGAGATCTGAATGGACTAGTTTCCAGTTTCAGGCTAAACACAGGGGAGGTGGAAAGAGCAGTTAGAACCATGGTGGGAAAGGATTGGTTTGCTGTGCGCGGGGCCTGGGTGCCAACAGGGAATAATGGGGACATTATACAGTGGAGCGCGGGACCTGGAGAGCCATCCAGAGCAAACATTACAGAAGTAATCTAGTCGATCAAATAGTGGTGGTGAGAATACGGCTGCAGGAGCTACTTGCGGGATTATCACCCATATATGTGAATCCTGCTGAAGCCGAGGGAGGTGTAATAGAGGTAGAAAAAGGAATAAAGACgagaaaagaggagaaaagaggataAGGCGAGtcaaaagaaaaagagaaaatgTTTTAATTGTAACGAAATTGGACATTTCGCCCGGGAGTGTAACACTCCCTGCAAAAGACGTCACCACCAATATTGTAGTTTAACTGAGGGAAAGGTCAGAGACGACAATCGGGTAAAGAAAAAGAAGGGTTAGATCCAAAGGGAGCGAGATTAATGAGAATCATAACTGAGGGAAAATGTTGGGCGTTTAAATTAGTTATATTTTCTGTTGTTCAGATGCTGGAGTAACAAATACAGATAACTGTAAATTGGGTCTATTTGCGGAGAATCTCAGTtccatagcattggtggtatagtggtgagcgtAGCAGTCTCACAACCTGCAGTCCAGGGTTCGGTTGCTGAGgcgtaaaaaaataataataatatatatatatctgagttTTTGGTTGTAATTAAACTAATTGTTTAGCAGAGAAAGTTATAGTCACTAGTATTGGTATAACAGATAAACTGAACGTGTTAAATAGTTTGTTTGGGACAAACTGAAAGACTAATTCATTCAACTTAAAATAAGAACGAAGCGAATTTTGATGCAAGACGATGTCTGTTCACTAAATTATCTGTTGGGAATAATATATTGAGAATAGAGTTGTAATTAAAATGCTAAATCAAAGACGAGAcagtaattcaaatcaaattaattgtGAATAATAACGGGGAAACAATTACGATAGATTTGTGTCCATCGAAATGTTTTTATAAAATTAGCGAATTGATTGATGTTGTAAACTCTAATTCAGGATTCAACAGATGTGATAAATCAGGTTTGGTTTATCGGACCCAAAATACTGTTGCTGCAGACAGCCAACCATTATTTACAATTAATTGAAAATCGTTGCGAAATGAGTCGAGGTTGAGCGCTTGTTGATGACATCACTCGCGAGGCTTTCGTCGCCACGGAAATGATGTCGTGACTGGGGGTAACGGAGAGAATGCTTCGTGTCTTTTAGAAGAAAAATGCGTGCATTATTATTGAGTCACTTTTCAGAAGTTGATAAAAATGtcgaaatacatttttaaaaggagTATGTAAATCGTCAGGAAAGATGCAAAAAACTAGCAGCTGATTCGCTAGattttatgcactacaggtgaattacaggtgaagtcactcaatccaATCCCTGAGGCCTGTTGGGGGTACCATACCAATGACTCCTGGGGACAGCTAGCAGAAAGAAATACCCGGATTCATATCACACTGCGGGAGGGTAAGACACCTTGTCACTGTCGAACAATAACAGAgttcgagaggagaactggaattaacagaattctgggggccatctctcgaatgaaAAATACCTTACCTGTCCTTTCCTCACTGTTCTTGTTCATAGAAGTGAAAATGTGTCTGACTCTTGCTAATGATGTGTTTTctggaagagggtggggctttatAGGTGAGCTGTCCATCCTAAGCTGTATGGTTGGAGATCTTATTCCTACAACATGAACCCGAGAAGGCCAGAGGGTAATATTGACATAATTAAATGAGAAATTAGTATTAACCAAGCATAAGAGATTACTTGATCTGGATAAACAGGATGGTTGAGATCTGGGGATTTCAGTAAGATAAGGAGACTCAGGGCTCACATCTGTTGAATGTGTGGGAGAATGACATGATGGCGGAGTATTACTGGCTAATTGAACAGAGGTATGTGTACTGAAACATTTTGAGAATGCCTTTTACGCTCATTCAACACCATGACATGGTGTTGACTAAACGGGAGAAAAGAAGTACTCCGACTGGGTCTTTTGATGATAGGGTTTGTATTAATAACATTGTGGATCCAAGGGTGGCAGATGAGATCAAAGCTATAAATTAGATCCTGGCAGGATTAGAGTCAAGTATTTTTTGGTGGTCCACTCTCAATGAGAATGTGGATTGGATCAATTATATCTATTAAAAATCCACAGCGCTTCACCAATTATTTTAGAGATGTAATGAATGACTTGGCAGAATAGAATAGTCTTGGATGTTTGCTGGCTGAAGAGGGTGGGAGTGTATAGGTAGTTTGACTCCAGGATATACAGTTAGGATGGATCAGTGACCAAGGCCTTGTCTGGTTTACACACCCTAGTTCACGAGTTGGAAATAAACTCAGGGGTGGATACTTCTTTGGCTAATTGGGTTGACAGTGTGTTTGAAAGATGGAAAAATGTTATGATTACTGTGTTATGGGCTACCttcacctgtgtgactgtgttagttTTGTACGGACGTGGTTGATTGCGTGTATGTATGAAAGTTATCATTTCCAGGACTCTGGCGAAATCGATGACACTTCAGATGGAGATATATGGACCAATCCTAAACTCTGACCAGTGGAATACAAAATACATGGCTTGGACGTAATAGAAGAATCCGGATCATTTCACTCGCGAGGAGACCATATTTGATGTTTAGGAAACTTAGATGTTTTCTTATTTCAATGTATAGACTGTTTTTTCATGAAGATTAACAGAAAATCCTGATAAGTAGAATTAAGATTCTGATGTAGGATAGAACAGTCATGGAAGTTGATTATGTACATACATGTATTGGTTGTCTTCTTTTAGTATCATTGATATTTCCATGTAGTGTTTAATGTTGGTATGAGTTGTTAAGTCATTTTGAGGGTGGATTGTTAGGAAATTATGATTAatatgactgaacaaatcattttaaatggaactgtaagtaaacttatactctgttataTTATGTTTAATAggcaatatgagttcataagaagaaaTTGTGTGACAAGAGAAAGGAGTAATAAAatgttaatgaacaccattccaactgggcaggaacaaatgggttgtggactgtgtaaacacataaggtcgttagcctatggttgacccaacctgaaacttagctctggggtttttagataaggcagtgagtgcattcctagggtttctgttaattaaaactgtcagttcagtggtgatcgataatgttgaggggtcaaaagttatctgggagtgtgttagtaagttagaatgaacttttcaccttacTTTGTCCTGTCGAGAGGAGGGGGTTCGGTTAAGGCAGtgaaatgacgtcatgatctGTATTTAAactgatgcatgtgtttgagtgggagcgcgctccgagaataaattctattacctattatttaaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC106576475

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041385.1 True 5190 mRNA 0.39 2 20702204 20709034

Neighbor

gene id symbol gene type direction distance location
LOC110512944 LOC106605423 coding upstream 55130 20629412 ~ 20647074 (+)
tbrg4 LOC106579951 coding upstream 80139 20605165 ~ 20622065 (+)
LOC110512899 LOC106579931 coding upstream 170865 20509292 ~ 20531339 (+)
LOC110512886 LOC106579923 coding upstream 193773 20490868 ~ 20508431 (+)
LOC110512870 LOC106605416 coding upstream 228678 20446669 ~ 20473526 (+)
LOC118936416 steap4 coding downstream 9823 20718857 ~ 20758800 (+)
LOC110503853 LOC106579991 coding downstream 49775 20758809 ~ 20783316 (+)
LOC118946512 LOC106579994 coding downstream 137963 20846997 ~ 20911413 (+)
mindy3 LOC106580009 coding downstream 259410 20968444 ~ 21022357 (+)
itga8 LOC106580029 coding downstream 317103 21026137 ~ 21091292 (+)
G233550 NA non-coding upstream 74837 20627031 ~ 20627367 (+)
G233546 NA non-coding upstream 82379 20608900 ~ 20619825 (+)
G233515 NA non-coding upstream 148881 20552815 ~ 20553323 (+)
G233508 NA non-coding upstream 153188 20548810 ~ 20549016 (+)
G233507 LOC106566552 non-coding upstream 153539 20548406 ~ 20548665 (+)
G233644 NA non-coding downstream 65861 20774895 ~ 20778525 (+)
G233687 NA non-coding downstream 204120 20913154 ~ 20915815 (+)
G233754 NA non-coding downstream 218864 20927898 ~ 20932727 (+)
G233753 LOC106580016 non-coding downstream 254722 20963756 ~ 20964155 (+)
G233820 NA non-coding downstream 387963 21096997 ~ 21100178 (+)
G233545 NA other upstream 93479 20608293 ~ 20608725 (+)
G233521 LOC106579937 other upstream 136492 20558776 ~ 20565712 (+)
LOC110512505 LOC106579702 other upstream 857552 19821356 ~ 19844652 (+)
G231983 LOC106597055 other upstream 1467909 19226366 ~ 19234295 (+)
G231438 NA other upstream 1850222 18851249 ~ 18851982 (+)
G234322 dcst2 other downstream 555041 21264075 ~ 21264506 (+)
G234340 LOC106580151 other downstream 577692 21286726 ~ 21287002 (+)
kiaa0319 LOC106580477 other downstream 1308560 22017579 ~ 22037490 (+)
LOC110503910 LOC106580557 other downstream 1349508 22057484 ~ 22068080 (+)
G235426 LOC106581355 other downstream 1595459 22303641 ~ 22304906 (+)

Expression


Co-expression Network