si:dkey-12j5.1 (LOC106580016)


Basic Information

Item Value
gene id si:dkey-12j5.1
gene name LOC106580016
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20927954 ~ 20968368 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593073.2
GTTAACAATACTCCAATGGCGTTTGTTTCAACACTTTATCAATGGAATTTGATCAAATACTCAACTAATTAAGGTTGTATATAGTACATGAGACAAGAAAACGCAACATCAAATCGATTGCCTTTGGCATTTTCAAACAGCGACTGTTCTTACTGCCGTTCACATTTAACTGGAACTGTTTGTCCACTATCTTTCTCCGTAGCTGCTGGGTTAGCAGTACTGAGCATGTGCACTCACACCCTACGCGTGGACTAATTTGTCCCCAATATTTTTACAGTGATTCGGACATAAATTATAAACTTGATTACAAATCGTCATTGTTGTAATGGGAGGCCAAACCAAGGGCAAAAAGAAGAGCAAAGCCAGGAGGAAAGATCCGCGCTCTAACGGAGGCTCTGGATTGGCAGGTCTGTCACCTCAAGATAGAATGAAGTTGAAGATGCAGGAGAAAGCCAAGAAAAAAACTGCTGAaaaatatactgtagaacaactATTGGAgaagACGGAGGAGTGTATGGACAGTTTGGAGTTTGAGATGGCAGGGAGGTTCTGTCAGCGAGCACTAGAGGTGGAGCCTGACAACCTCCTTACCCTGGACCTGCTAGGACACATCCACTCTGAACTGGGAGACACACAGAGGGCCAAGGAAGTGTTTCTGCATGCAGTGCAGTTGAGTCCTGAAGAAGGTCATAGTAAATACATGTCTCTAGGGCAGATACACACAGGCCAGGAGGCTGTGCAGTACTACACCAAAGGAGTACAGATACTACTGTGTATGCTGGAGAAACACGCACAAGCCACAgcaggagcaggagcaggagctgAGGCAGCAGCCTCTCCACTCCAGGACTCGGGGTCAGAGATTCCGATAGCCAGACACGTGTGTGTGGCCTACTGTTCTGTGGCAGAGATCTACTTCACTGACCTCTGtatggaggagagggcaggagatCAGTGTCGAGAGGCCATAGAACGAGCGCTGACCTATCAGCCTGACAACCCAGAGGCTCTACAGCTGATGGCCAGCTACCTGTTCAGTACAGAGAAGAAccaggaggggaAGGAGTACCTGATGAGGAGTGTGGATGCGTGGCTACCTGCCCTGAAACAGAGTGAAGCTCCACCCAGCAGAGAGGACATAGAGGAggaacacacacagAGTGACATCCCACCATATGAATCCCGCATCACCACGGCCAAACTCCTCATAGAGGCAGAAGAGTACGAGACAGCAGTAGATGTGTTGGAGGGTCTACTAGAGGAAGATGACGAGGTGGTGCAGgtgTGGTATCTCTCAGGCTGGGTGTGTTACCtacagatggaggagagaagaagggaggagagagaagagagcgatgaggagagggaggagcgtGAAGCGTTGAAGGAGGCAGCCAGATCTTACCTGACCAAAGCCAagaagctgtatGTGAAGTTGCACTGTGACGACGGACCCATACTGGAGCACATGGAGCAGCTGCTGGTGGAACTGGGGggtgagacagaggaggaggaggaggagacagacccTGCCCTGGATGAAGACTTTGAGCCCAGCAGTgacgatgaggaggaggaagaggacgccATGGAACATTgaccacacccctctctctctaccagtgaTCTAGTGGTAAAACTGTGGctgtatGTGAAGTTGCGCTGTGATGATGGACCCATACTGAAGCACATGGAGCAGCTGCTGGTGGAACTGGGGggtgagacagagggggaggaggaggagacagacccTGCCCTGGATGAAGACTTTGAGCCCAGCAGTGACGATGAGGAAGAGGACGCCATGGAACATTgaccacacccctctctctctagcagtgatcTAGTGGTAAAACAGTGGGTTAGTACACGCTGAGACGTTGGCGGTAAATAAAGTAACACTATGTTTCCAATGTATTTTTCTGCGATAGGTGGGGAAACGCTTGGGCAAAATAAAAAAGTGTGTAAATGGCGTTTAGACTGCATAACCCTCTACTTTTATAGAGCACTATgaactaaataaaaaaaatctacttGAATACTGTTTGTTCTTTGTATTCTCCTCTCAATCTGATTCTTTTTTGGATTCGTGTTGTAATAATGAGGTGAATGTTTGCTTCCCTTCATGACCCAGGCTCACTTTAGAAAGAGATTCCAATATGAATGTGACCTGCTAAAATAAAGAACTAATACAGAA
>XM_021593069.2
GTTAACAATACTCCAATGGCGTTTGTTTCAACACTTTATCAATGGAATTTGATCAAATACTCAACTAATTAAGGTTGTATATAGTACATGAGACAAGAAAACGCAACATCAAATCGATTGCCTTTGGCATTTTCAAACAGCGACTGTTCTTACTGCCGTTCACATTTAACTGGAACTGTTTGTCCACTATCTTTCTCCGTAGCTGCTGGGTTAGCAGTACTGAGCATGTGCACTCACACCCTACGCGTGGACTAATTTGTCCCCAATATTTTTACAGTGATTCGGACATAAATTATAAACTTGATTACAAATCGTCATTGTTGTAATGGGAGGCCAAACCAAGGGCAAAAAGAAGAGCAAAGCCAGGAGGAAAGATCCGCGCTCTAACGGAGGCTCTGGATTGGCAGGTCTGTCACCTCAAGATAGAATGAAGTTGAAGATGCAGGAGAAAGCCAAGAAAAAAACTGCTGAaaaatatactgtagaacaactATTGGAgaagACGGAGGAGTGTATGGACAGTTTGGAGTTTGAGATGGCAGGGAGGTTCTGTCAGCGAGCACTAGAGGTGGAGCCTGACAACCTCCTTACCCTGGACCTGCTAGGACACATCCACTCTGAACTGGGAGACACACAGAGGGCCAAGGAAGTGTTTCTGCATGCAGTGCAGTTGAGTCCTGAAGAAGGTCATAGTAAATACATGTCTCTAGGGCAGATACACACAGGCCAGGAGGCTGTGCAGTACTACACCAAAGGAGTACAGATACTACTGTGTATGCTGGAGAAACACGCACAAGCCACAgcaggagcaggagcaggagctgAGGCAGCAGCCTCTCCACTCCAGGACTCGGGGTCAGAGATTCCGATAGCCAGACACGTGTGTGTGGCCTACTGTTCTGTGGCAGAGATCTACTTCACTGACCTCTGtatggaggagagggcaggagatCAGTGTCGAGAGGCCATAGAACGAGCGCTGACCTATCAGCCTGACAACCCAGAGGCTCTACAGCTGATGGCCAGCTACCTGTTCAGTACAGAGAAGAAccaggaggggaAGGAGTACCTGATGAGGAGTGTGGATGCGTGGCTACCTGCCCTGAAACAGAGTGAAGCTCCACCCAGCAGAGAGGACATAGAGGAggaacacacacagAGTGACATCCCACCATATGAATCCCGCATCACCACGGCCAAACTCCTCATAGAGGCAGAAGAGTACGAGACAGCAGTAGATGTGTTGGAGGGTCTACTAGAGGAAGATGACGAGGTGGTGCAGgtgTGGTATCTCTCAGGCTGGGTGTGTTACCtacagatggaggagagaagaagggaggagagagaagagagcgatgaggagagggaggagcgtGAAGCGTTGAAGGAGGCAGCCAGATCTTACCTGACCAAAGCCAagaagctgtatGTGAAGTTGCACTGTGACGACGGACCCATACTGGAGCACATGGAGCAGCTGCTGGTGGAACTGGGGggtgagacagaggaggaggaggaggagacagacccTGCCCTGGATGAAGACTTTGAGCCCAGCAGTgacgatgaggaggaggaagaggacgccATGGAACATTgaccacacccctctctctctaccagtgaTCTAGTGGTAAAACTGTGGGTTAGTACACGCTGAGACGTTCGCTGTGAATAAAGTAACACTCTCTATGTTTCCAATGTCTTTTTCTGCGATAGGTGGGGAAATAAAAAAGTATGTAAACAGCGTTTAGACTGCATACCACTCTCtacttttatagtgcactattaaCTCGGacattaaataaaggtaaagttTATAAAAATGTAGTTTTATAAAGACCTCTTACCCATCTCTGTACACCTCACAAACTAGACCCAGATGCAACACTTTGTTGGAAAGCTGCAGAGTTGCGAGTGCGACAGTCGATGGGCCCTTGAGAGAGGATGACTGGGCCCTTGAGTTTTCTCTGAATCTTTCTCGCTCGCTAGATATTGTCTGTATCGTGTTCTCAGAAGTGCCTTTCTGCTGTTCAACCCTGAGTTTCCCAGAATCatatgacttctctctctgtcatattaGTGCTGAATTGTTTTCAATATTAGAAAGGAGTGATTGACATGTCGACTCGAGATTTGTTTCCATTGCCCTGGAAATAACCAGATAAAAAAACAACTTATACTGTTTtgagagaaaaagacaaagaacaatctgcttcttttttttttatttgtgttgTAATAATGAGGTGAATTTTTGCTTCCCTTCATGACCCAGGCTCACTTTAGAAAGAGATTCCAATATGAATGTGACCTGCTAAAATAAAGAATTAACACAGAACAGA
>XM_036971660.1
GTTAACAATACTCCAATGGCGTTTGTTTCAACACTTTATCAATGGAATTTGATCAAATACTCAACTAATTAAGGTTGTATATAGTACATGAGACAAGAAAACGCAACATCAAATCGATTGCCTTTGGCATTTTCAAACAGCGACTGTTCTTACTGCCGTTCACATTTAACTGGAACTGTTTGTCCACTATCTTTCTCCGTAGCTGCTGGGTTAGCAGTACTGAGCATGTGCACTCACACCCTACGCGTGGACTAATTTGTCCCCAATATTTTTACAGTGATTCGGACATAAATTATAAACTTGATTACAAATCGTCATTGTTGTAATGGGAGGCCAAACCAAGGGCAAAAAGAAGAGCAAAGCCAGGAGGAAAGATCCGCGCTCTAACGGAGGCTCTGGATTGGCAGGTCTGTCACCTCAAGATAGAATGAAGTTGAAGATGCAGGAGAAAGCCAAGAAAAAAACTGCTGAaaaatatactgtagaacaactATTGGAgaagACGGAGGAGTGTATGGACAGTTTGGAGTTTGAGATGGCAGGGAGGTTCTGTCAGCGAGCACTAGAGGTGGAGCCTGACAACCTCCTTACCCTGGACCTGCTAGGACACATCCACTCTGAACTGGGAGACACACAGAGGGCCAAGGAAGTGTTTCTGCATGCAGTGCAGTTGAGTCCTGAAGAAGGTCATAGTAAATACATGTCTCTAGGGCAGATACACACAGGCCAGGAGGCTGTGCAGTACTACACCAAAGGAGTACAGATACTACTGTGTATGCTGGAGAAACACGCACAAGCCACagcaggagcaggagctgAGGCAGCAGCCTCTCCACTCCAGGACTCGGGGTCAGAGATTCCGATAGCCAGACACGTGTGTGTGGCCTACTGTTCTGTGGCAGAGATCTACTTCACTGACCTCTGtatggaggagagggcaggagatCAGTGTCGAGAGGCCATAGAACGAGCGCTGACCTATCAGCCTGACAACCCAGAGGCTCTACAGCTGATGGCCAGCTACCTGTTCAGTACAGAGAAGAAccaggaggggaAGGAGTACCTGATGAGGAGTGTGGATGCGTGGCTACCTGCCCTGAAACAGAGTGAAGCTCCACCCAGCAGAGAGGACATAGAGGAggaacacacacagAGTGACATCCCACCATATGAATCCCGCATCACCACGGCCAAACTCCTCATAGAGGCAGAAGAGTACGAGACAGCAGTAGATGTGTTGGAGGGTCTACTAGAGGAAGATGACGAGGTGGTGCAGgtgTGGTATCTCTCAGGCTGGGTGTGTTACCtacagatggaggagagaagaagggaggagagagaagagagcgatgaggagagggaggagcgtGAAGCGTTGAAGGAGGCAGCCAGATCTTACCTGACCAAAGCCAagaagctgtatGTGAAGTTGCACTGTGACGACGGACCCATACTGGAGCACATGGAGCAGCTGCTGGTGGAACTGGGGggtgagacagaggaggaggaggaggagacagacccTGCCCTGGATGAAGACTTTGAGCCCAGCAGTgacgatgaggaggaggaagaggacgccATGGAACATTgaccacacccctctctctctaccagtgaTCTAGTGGTAAAACTGTGGGTTAGTACACGCTGAGACGTTCGCTGTGAATAAAGTAACACTCTCTATGTTTCCAATGTCTTTTTCTGCGATAGGTGGGGAAATAAAAAAGTATGTAAACAGCGTTTAGACTGCATACCACTCTCtacttttatagtgcactattaaCTCGGacattaaataaaggtaaagttTATAAAAATGTAGTTTTATAAAGACCTCTTACCCATCTCTGTACACCTCACAAACTAGACCCAGATGCAACACTTTGTTGGAAAGCTGCAGAGTTGCGAGTGCGACAGTCGATGGGCCCTTGAGAGAGGATGACTGGGCCCTTGAGTTTTCTCTGAATCTTTCTCGCTCGCTAGATATTGTCTGTATCGTGTTCTCAGAAGTGCCTTTCTGCTGTTCAACCCTGAGTTTCCCAGAATCatatgacttctctctctgtcatattaGTGCTGAATTGTTTTCAATATTAGAAAGGAGTGATTGACATGTCGACTCGAGATTTGTTTCCATTGCCCTGGAAATAACCAGATAAAAAAACAACTTATACTGTTTtgagagaaaaagacaaagaacaatctgcttcttttttttttatttgtgttgTAATAATGAGGTGAATTTTTGCTTCCCTTCATGACCCAGGCTCACTTTAGAAAGAGATTCCAATATGAATGTGACCTGCTAAAATAAAGAATTAACACAGAACAGA
>XM_036971663.1
GTTAACAATACTCCAATGGCGTTTGTTTCAACACTTTATCAATGGAATTTGATCAAATACTCAACTAATTAAGGTTGTATATAGTACATGAGACAAGAAAACGCAACATCAAATCGATTGCCTTTGGCATTTTCAAACAGCGACTGTTCTTACTGCCGTTCACATTTAACTGGAACTGTTTGTCCACTATCTTTCTCCGTAGCTGCTGGGTTAGCAGTACTGAGCATGTGCACTCACACCCTACGCGTGGACTAATTTGTCCCCAATATTTTTACAGTGATTCGGACATAAATTATAAACTTGATTACAAATCGTCATTGTTGTAATGGGAGGCCAAACCAAGGGCAAAAAGAAGAGCAAAGCCAGGAGGAAAGATCCGCGCTCTAACGGAGGCTCTGGATTGGCAGGTCTGTCACCTCAAGATAGAATGAAGTTGAAGATGCAGGAGAAAGCCAAGAAAAAAACTGCTGAaaaatatactgtagaacaactATTGGAgaagACGGAGGAGTGTATGGACAGTTTGGAGTTTGAGATGGCAGGGAGGTTCTGTCAGCGAGCACTAGAGGTGGAGCCTGACAACCTCCTTACCCTGGACCTGCTAGGACACATCCACTCTGAACTGGGAGACACACAGAGGGCCAAGGAAGTGTTTCTGCATGCAGTGCAGTTGAGTCCTGAAGAAGGTCATAGTAAATACATGTCTCTAGGGCAGATACACACAGGCCAGGAGGCTGTGCAGTACTACACCAAAGGAGTACAGATACTACTGTGTATGCTGGAGAAACACGCACAAGCCACagcaggagctgAGGCAGCAGCCTCTCCACTCCAGGACTCGGGGTCAGAGATTCCGATAGCCAGACACGTGTGTGTGGCCTACTGTTCTGTGGCAGAGATCTACTTCACTGACCTCTGtatggaggagagggcaggagatCAGTGTCGAGAGGCCATAGAACGAGCGCTGACCTATCAGCCTGACAACCCAGAGGCTCTACAGCTGATGGCCAGCTACCTGTTCAGTACAGAGAAGAAccaggaggggaAGGAGTACCTGATGAGGAGTGTGGATGCGTGGCTACCTGCCCTGAAACAGAGTGAAGCTCCACCCAGCAGAGAGGACATAGAGGAggaacacacacagAGTGACATCCCACCATATGAATCCCGCATCACCACGGCCAAACTCCTCATAGAGGCAGAAGAGTACGAGACAGCAGTAGATGTGTTGGAGGGTCTACTAGAGGAAGATGACGAGGTGGTGCAGgtgTGGTATCTCTCAGGCTGGGTGTGTTACCtacagatggaggagagaagaagggaggagagagaagagagcgatgaggagagggaggagcgtGAAGCGTTGAAGGAGGCAGCCAGATCTTACCTGACCAAAGCCAagaagctgtatGTGAAGTTGCACTGTGACGACGGACCCATACTGGAGCACATGGAGCAGCTGCTGGTGGAACTGGGGggtgagacagaggaggaggaggaggagacagacccTGCCCTGGATGAAGACTTTGAGCCCAGCAGTgacgatgaggaggaggaagaggacgccATGGAACATTgaccacacccctctctctctaccagtgaTCTAGTGGTAAAACTGTGGGTTAGTACACGCTGAGACGTTCGCTGTGAATAAAGTAACACTCTCTATGTTTCCAATGTCTTTTTCTGCGATAGGTGGGGAAATAAAAAAGTATGTAAACAGCGTTTAGACTGCATACCACTCTCtacttttatagtgcactattaaCTCGGacattaaataaaggtaaagttTATAAAAATGTAGTTTTATAAAGACCTCTTACCCATCTCTGTACACCTCACAAACTAGACCCAGATGCAACACTTTGTTGGAAAGCTGCAGAGTTGCGAGTGCGACAGTCGATGGGCCCTTGAGAGAGGATGACTGGGCCCTTGAGTTTTCTCTGAATCTTTCTCGCTCGCTAGATATTGTCTGTATCGTGTTCTCAGAAGTGCCTTTCTGCTGTTCAACCCTGAGTTTCCCAGAATCatatgacttctctctctgtcatattaGTGCTGAATTGTTTTCAATATTAGAAAGGAGTGATTGACATGTCGACTCGAGATTTGTTTCCATTGCCCTGGAAATAACCAGATAAAAAAACAACTTATACTGTTTtgagagaaaaagacaaagaacaatctgcttcttttttttttatttgtgttgTAATAATGAGGTGAATTTTTGCTTCCCTTCATGACCCAGGCTCACTTTAGAAAGAGATTCCAATATGAATGTGACCTGCTAAAATAAAGAATTAACACAGAACAGA

Function

NR:

description
probable assembly chaperone of rpl4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593073.2 False 2197 mRNA 0.48 12 20927954 20968368
XM_021593069.2 False 2345 mRNA 0.46 11 20931813 20968368
XM_036971660.1 False 2339 mRNA 0.46 11 20931813 20968368
XM_036971663.1 True 2333 mRNA 0.46 11 20931813 20968368

Neighbor

gene id symbol gene type direction distance location
glipr2l LOC106605424 coding downstream 275902 20648378 ~ 20652052 (-)
LOC110512925 NA coding downstream 332399 20590446 ~ 20595555 (-)
trnat-ugu-32 NA coding downstream 335826 20592056 ~ 20592128 (-)
trnat-ugu-31 NA coding downstream 344602 20583280 ~ 20583352 (-)
LOC110512912 LOC106579937 coding downstream 346422 20563648 ~ 20581532 (-)
LOC110513019 LOC106580057 coding upstream 123419 21091787 ~ 21100107 (-)
LOC110513063 thbs3 coding upstream 143854 21112222 ~ 21133895 (-)
LOC110513075 NA coding upstream 167709 21135542 ~ 21152356 (-)
LOC110513123 LOC106580095 coding upstream 199772 21168140 ~ 21172480 (-)
LOC110513176 LOC106605439 coding upstream 230397 21198765 ~ 21230066 (-)
G234069 NA non-coding downstream 12048 20914147 ~ 20915906 (-)
G234013 NA non-coding downstream 98682 20823376 ~ 20829272 (-)
G233957 NA non-coding downstream 195619 20731978 ~ 20732335 (-)
G233955 NA non-coding downstream 197896 20729822 ~ 20730058 (-)
G233942 NA non-coding downstream 218947 20702205 ~ 20709007 (-)
G234102 NA non-coding upstream 15797 20984165 ~ 20984574 (-)
G234166 NA non-coding upstream 120217 21088585 ~ 21091208 (-)
G234171 NA non-coding upstream 132411 21100779 ~ 21101316 (-)
G234173 NA non-coding upstream 134533 21102901 ~ 21103148 (-)
G234179 NA non-coding upstream 142571 21110939 ~ 21111461 (-)
G233513 LOC106561082 other downstream 375957 20551783 ~ 20551997 (-)
G233052 LOC106605397 other downstream 1171336 19756204 ~ 19757908 (-)
G232980 NA other downstream 1279325 19648086 ~ 19648629 (-)
rims2a LOC106579570 other downstream 1328853 19416054 ~ 19652601 (-)
G234224 LOC106605437 other upstream 210229 21178597 ~ 21180682 (-)
LOC110513321 LOC106580205 other upstream 477120 21438546 ~ 21455972 (-)
G234600 NA other upstream 501293 21469661 ~ 21469945 (-)
G234621 NA other upstream 530040 21498408 ~ 21498832 (-)
G235092 LOC100194668 other upstream 770477 21738845 ~ 21743411 (-)

Expression


Co-expression Network