LOC110513019 (LOC106580057)


Basic Information

Item Value
gene id LOC110513019
gene name LOC106580057
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21091787 ~ 21100107 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593101.2
CGACACGAGTGATTTATACCGACATCGAGGGAGGAAGGAAAAGCGGCTTGCCATGAAACCAGTTTGAGACTGGACATCAGTGTCGGCAGCTCACTCGGACAGTTTGGGACTTTGGTGTCAGTGCAGGCAAAACCTACTTCGCCTTTTTCCTATTGGAACGAGTGAGGTGGGGACGTTTACGCAGTGTCTCATACGGAGCTACAACAGAGAACGGTGTTGACTTCAGTCTGAGTGCTGTTGATGGGTTCCAAGAGTGTGGGAGATCGTTTTGCAACAACACACAGTCTTAAATAGTTAGCGTCTATTCAAATAGCCCCTGTACTGAGCCTGAGCCTGGTCTGCAGCCCTCGGCCTGAGGCTGGAAGGGGATGGGGACACTGGCCCTTTGCAGCCACTACTCACAGCTGTCATGGAAACGCAGCGTCATAGTGGCAATGCTACTGTTTCACCTGTGCTGCCTGCAAGTATGGGCATCCTGTCGCATCCTGAGGTGCAACTCTGACTTTGTAGCTGTCACCCTGGACCTTGGGGGCAGCGGAGGGGGCggaggaggaggcagcagagAGGGCAATGCGGGCTACTGCAGCGCCCTCCGCTCCTATGCCATGTGTACCCGCCGCATGGCCCGTGCCTGCCGGGGCGACCTGGTCTACCACTCGGCCGTGCAGGGCATCGAGGACCTCCTCATCCAGCACAGCTGCCCCAGGACAGGCCCCACCGCTCAGCCCCGGCCCCTGCCACAGGCCCCCATCTCTGGGGACGCCTGTATCTATGAGAAGGGCTACCTCCAGCGTGAGGGCCGGACCCCTGACTATCTCCACTGTGGAGTGTTCGGGGATCCCCATGTTCGCACCTTCCGTGATGAGTTCCAGACGTGCGCTGTACAAGGGGCCTGGCCACTGATAGATAATGAGTATCTATACGTTCAGGCAACAAGCGCCCCCATGAGAGGAGGGGTGTATGCCACGGCTCTCATCACGATTACCATCATCTTTAAGAACTGGCGCCAGTGTATCGAGCAGCAGATCTACCAGGCGGAGCTGGACAACGTTCCCGCAGCCTTCGTGGACGGCTCAGTGACCAGCGAGGAGAGGCAGGGCCAGCACAGCCTGAGCGTCCACTCTGATCTGCCTGGGCTCCAGGCTGAGATCCGTGCTGCCCACATCGGCACCACCCTGGTGGTGCGTCAGAGTGGGCGGTCCCTGGGCCTGTCAGTACGCTCGCCAAGTGCCATTGCTGAAGCATTCACCCCCGAGCAGGACCTGCAGCTGTGTGTATATGGCTGCCCACCTTCACAGCGCCTAGAGACGCTACCCagcccctcttcttcctcctccctttcctcctcttcctccagccaGCCCTCTGCTGCAGCCCATGTCCACTGTGCAGCCCTCCTCCCTGCTAGGGACATCTACTACCAGGCCTGCCTGTTTGACCTGCTGGCCACAGGGGACCTCAACTCCAGCACGGCGGCTGTGGCGGCCCTGGAAGACGCCCGGGGAATGATCTCAGACCCCAATAAGGTGCATCTGCTACTGGTGGGCAATGCCGATGGTAGTAGCCCATGTCTGCCTCTGATCCTGGCTGTGGCTGTCCTATCAGAGCATCTGTTGGCTCTGTGGACGGGGCAGTGTTTATGAACTAGTGACTGGTAGGAGCTGTGGGCATAGCATTAGCCACACTGACTCTGACTGAGcagatgctttaaaaaaaaatcttgatGGCCTTGTTTCATAAACAACAGGCATCACCTTTGACTGGTTGGAACCCAGTGGCATTGTGCCTGGTTACAGAGGTCAATGTTTCCCTGATTTGTTTTCTTCCAGCAGGAGAAGAATGTTGATAGGAATAAATACAGGTCAATGCTCTCCGTGAGGATAGAAGTGAACTATTGAAGCCTGACACTAGTTGTGTTGATTCTAATCCCTTAACTACGCTGagacaaatgtattaaaacaataTGTATTATCCATCTCAGCACAGAGGATGGCCTGTTGAATAATCCAGATAGTTAATGGAATCTTCAactctttttttttatatactttctgttattttctgtttatgATGGAGGGGAATTTAGTAGTTTGTTTATAGTAAATATAATACTACAGTGGTATCATCCTCTGTAAAGAAACTAATTTATCACTAATTTATTACGTCATCTTTGTGTGTCTACATTTGGTTTGCAGTGAGTTGTAATAACGTCTCGATTCATTTCATAAGGGACTGTTTTTGAATGTACGTTTGGTTCATATGTCAGTATTTGTAAGACAATGTTTACAATGTATTGTTCATCCTGTTCATATTTTTACCTACTGTAGTTGCCAAAGTAAAAAAGATATCTTCCCAAAGTTACTCATACCATCTTTCTAAAACAATAGAGATCAAACAAGGAGTCAATTAAAATAATATATTGTTTTCCAGATGAAATTATCTCCAATTTCCTTCCATGTAATAATGTGATCTCTGTCAAGGATAAAACATATTTATACCTACAGATTCTAATATATTTCCCTTTGTGAGTTTTATTAAATTTGatcgtttttttccccc
>XM_021593102.2
CGACACGAGTGATTTATACCGACATCGAGGGAGGAAGGAAAAGCGGCTTGCCATGAAACCAGTTTGAGACTGGACATCAGTGTCGGCAGCTCACTCGGACAGTTTGGGACTTTGGTGTCAGTGCAGGCAAAACCTACTTCGCCTTTTTCCTATTGGAACGAGTGAGGTGGGGACGTTTACGCAGTGTCTCATACGGAGCTACAACAGAGGTGTGATTTTGCCCCTGTACTGAGCCTGAGCCTGGTCTGCAGCCCTCGGCCTGAGGCTGGAAGGGGATGGGGACACTGGCCCTTTGCAGCCACTACTCACAGCTGTCATGGAAACGCAGCGTCATAGTGGCAATGCTACTGTTTCACCTGTGCTGCCTGCAAGTATGGGCATCCTGTCGCATCCTGAGGTGCAACTCTGACTTTGTAGCTGTCACCCTGGACCTTGGGGGCAGCGGAGGGGGCggaggaggaggcagcagagAGGGCAATGCGGGCTACTGCAGCGCCCTCCGCTCCTATGCCATGTGTACCCGCCGCATGGCCCGTGCCTGCCGGGGCGACCTGGTCTACCACTCGGCCGTGCAGGGCATCGAGGACCTCCTCATCCAGCACAGCTGCCCCAGGACAGGCCCCACCGCTCAGCCCCGGCCCCTGCCACAGGCCCCCATCTCTGGGGACGCCTGTATCTATGAGAAGGGCTACCTCCAGCGTGAGGGCCGGACCCCTGACTATCTCCACTGTGGAGTGTTCGGGGATCCCCATGTTCGCACCTTCCGTGATGAGTTCCAGACGTGCGCTGTACAAGGGGCCTGGCCACTGATAGATAATGAGTATCTATACGTTCAGGCAACAAGCGCCCCCATGAGAGGAGGGGTGTATGCCACGGCTCTCATCACGATTACCATCATCTTTAAGAACTGGCGCCAGTGTATCGAGCAGCAGATCTACCAGGCGGAGCTGGACAACGTTCCCGCAGCCTTCGTGGACGGCTCAGTGACCAGCGAGGAGAGGCAGGGCCAGCACAGCCTGAGCGTCCACTCTGATCTGCCTGGGCTCCAGGCTGAGATCCGTGCTGCCCACATCGGCACCACCCTGGTGGTGCGTCAGAGTGGGCGGTCCCTGGGCCTGTCAGTACGCTCGCCAAGTGCCATTGCTGAAGCATTCACCCCCGAGCAGGACCTGCAGCTGTGTGTATATGGCTGCCCACCTTCACAGCGCCTAGAGACGCTACCCagcccctcttcttcctcctccctttcctcctcttcctccagccaGCCCTCTGCTGCAGCCCATGTCCACTGTGCAGCCCTCCTCCCTGCTAGGGACATCTACTACCAGGCCTGCCTGTTTGACCTGCTGGCCACAGGGGACCTCAACTCCAGCACGGCGGCTGTGGCGGCCCTGGAAGACGCCCGGGGAATGATCTCAGACCCCAATAAGGTGCATCTGCTACTGGTGGGCAATGCCGATGGTAGTAGCCCATGTCTGCCTCTGATCCTGGCTGTGGCTGTCCTATCAGAGCATCTGTTGGCTCTGTGGACGGGGCAGTGTTTATGAACTAGTGACTGGTAGGAGCTGTGGGCATAGCATTAGCCACACTGACTCTGACTGAGcagatgctttaaaaaaaaatcttgatGGCCTTGTTTCATAAACAACAGGCATCACCTTTGACTGGTTGGAACCCAGTGGCATTGTGCCTGGTTACAGAGGTCAATGTTTCCCTGATTTGTTTTCTTCCAGCAGGAGAAGAATGTTGATAGGAATAAATACAGGTCAATGCTCTCCGTGAGGATAGAAGTGAACTATTGAAGCCTGACACTAGTTGTGTTGATTCTAATCCCTTAACTACGCTGagacaaatgtattaaaacaataTGTATTATCCATCTCAGCACAGAGGATGGCCTGTTGAATAATCCAGATAGTTAATGGAATCTTCAactctttttttttatatactttctgttattttctgtttatgATGGAGGGGAATTTAGTAGTTTGTTTATAGTAAATATAATACTACAGTGGTATCATCCTCTGTAAAGAAACTAATTTATCACTAATTTATTACGTCATCTTTGTGTGTCTACATTTGGTTTGCAGTGAGTTGTAATAACGTCTCGATTCATTTCATAAGGGACTGTTTTTGAATGTACGTTTGGTTCATATGTCAGTATTTGTAAGACAATGTTTACAATGTATTGTTCATCCTGTTCATATTTTTACCTACTGTAGTTGCCAAAGTAAAAAAGATATCTTCCCAAAGTTACTCATACCATCTTTCTAAAACAATAGAGATCAAACAAGGAGTCAATTAAAATAATATATTGTTTTCCAGATGAAATTATCTCCAATTTCCTTCCATGTAATAATGTGATCTCTGTCAAGGATAAAACATATTTATACCTACAGATTCTAATATATTTCCCTTTGTGAGTTTTATTAAATTTGatcgtttttttccccc
>XM_021593108.2
CGACACGAGTGATTTATACCGACATCGAGGGAGGAAGGAAAAGCGGCTTGCCATGAAACCAGTTTGAGACTGGACATCAGTGTCGGCAGCTCACTCGGACAGTTTGGGACTTTGGTGTCAGTGCAGGCAAAACCTACTTCGCCTTTTTCCTATTGGAACGAGTGAGGTGGGGACGTTTACGCAGTGTCTCATACGGAGCTACAACAGAGCCCCTGTACTGAGCCTGAGCCTGGTCTGCAGCCCTCGGCCTGAGGCTGGAAGGGGATGGGGACACTGGCCCTTTGCAGCCACTACTCACAGCTGTCATGGAAACGCAGCGTCATAGTGGCAATGCTACTGTTTCACCTGTGCTGCCTGCAAGTATGGGCATCCTGTCGCATCCTGAGGTGCAACTCTGACTTTGTAGCTGTCACCCTGGACCTTGGGGGCAGCGGAGGGGGCggaggaggaggcagcagagAGGGCAATGCGGGCTACTGCAGCGCCCTCCGCTCCTATGCCATGTGTACCCGCCGCATGGCCCGTGCCTGCCGGGGCGACCTGGTCTACCACTCGGCCGTGCAGGGCATCGAGGACCTCCTCATCCAGCACAGCTGCCCCAGGACAGGCCCCACCGCTCAGCCCCGGCCCCTGCCACAGGCCCCCATCTCTGGGGACGCCTGTATCTATGAGAAGGGCTACCTCCAGCGTGAGGGCCGGACCCCTGACTATCTCCACTGTGGAGTGTTCGGGGATCCCCATGTTCGCACCTTCCGTGATGAGTTCCAGACGTGCGCTGTACAAGGGGCCTGGCCACTGATAGATAATGAGTATCTATACGTTCAGGCAACAAGCGCCCCCATGAGAGGAGGGGTGTATGCCACGGCTCTCATCACGATTACCATCATCTTTAAGAACTGGCGCCAGTGTATCGAGCAGCAGATCTACCAGGCGGAGCTGGACAACGTTCCCGCAGCCTTCGTGGACGGCTCAGTGACCAGCGAGGAGAGGCAGGGCCAGCACAGCCTGAGCGTCCACTCTGATCTGCCTGGGCTCCAGGCTGAGATCCGTGCTGCCCACATCGGCACCACCCTGGTGGTGCGTCAGAGTGGGCGGTCCCTGGGCCTGTCAGTACGCTCGCCAAGTGCCATTGCTGAAGCATTCACCCCCGAGCAGGACCTGCAGCTGTGTGTATATGGCTGCCCACCTTCACAGCGCCTAGAGACGCTACCCagcccctcttcttcctcctccctttcctcctcttcctccagccaGCCCTCTGCTGCAGCCCATGTCCACTGTGCAGCCCTCCTCCCTGCTAGGGACATCTACTACCAGGCCTGCCTGTTTGACCTGCTGGCCACAGGGGACCTCAACTCCAGCACGGCGGCTGTGGCGGCCCTGGAAGACGCCCGGGGAATGATCTCAGACCCCAATAAGGTGCATCTGCTACTGGTGGGCAATGCCGATGGTAGTAGCCCATGTCTGCCTCTGATCCTGGCTGTGGCTGTCCTATCAGAGCATCTGTTGGCTCTGTGGACGGGGCAGTGTTTATGAACTAGTGACTGGTAGGAGCTGTGGGCATAGCATTAGCCACACTGACTCTGACTGAGcagatgctttaaaaaaaaatcttgatGGCCTTGTTTCATAAACAACAGGCATCACCTTTGACTGGTTGGAACCCAGTGGCATTGTGCCTGGTTACAGAGGTCAATGTTTCCCTGATTTGTTTTCTTCCAGCAGGAGAAGAATGTTGATAGGAATAAATACAGGTCAATGCTCTCCGTGAGGATAGAAGTGAACTATTGAAGCCTGACACTAGTTGTGTTGATTCTAATCCCTTAACTACGCTGagacaaatgtattaaaacaataTGTATTATCCATCTCAGCACAGAGGATGGCCTGTTGAATAATCCAGATAGTTAATGGAATCTTCAactctttttttttatatactttctgttattttctgtttatgATGGAGGGGAATTTAGTAGTTTGTTTATAGTAAATATAATACTACAGTGGTATCATCCTCTGTAAAGAAACTAATTTATCACTAATTTATTACGTCATCTTTGTGTGTCTACATTTGGTTTGCAGTGAGTTGTAATAACGTCTCGATTCATTTCATAAGGGACTGTTTTTGAATGTACGTTTGGTTCATATGTCAGTATTTGTAAGACAATGTTTACAATGTATTGTTCATCCTGTTCATATTTTTACCTACTGTAGTTGCCAAAGTAAAAAAGATATCTTCCCAAAGTTACTCATACCATCTTTCTAAAACAATAGAGATCAAACAAGGAGTCAATTAAAATAATATATTGTTTTCCAGATGAAATTATCTCCAATTTCCTTCCATGTAATAATGTGATCTCTGTCAAGGATAAAACATATTTATACCTACAGATTCTAATATATTTCCCTTTGTGAGTTTTATTAAATTTGatcgtttttttccccc
>XM_036971684.1
CGACACGAGTGATTTATACCGACATCGAGGGAGGAAGGAAAAGCGGCTTGCCATGAAACCAGTTTGAGACTGGACATCAGTGTCGGCAGCTCACTCGGACAGTTTGGGACTTTGGTGTCAGTGCAGGCAAAACCTACTTCGCCTTTTTCCTATTGGAACGAGTGAGGTGGGGACGTTTACGCAGTGTCTCATACGGAGCTACAACAGAGGTGTGATTTGAACGGTGTTGACTTCAGTCTGAGTGCTGTTGATGGGTTCCAAGAGTGTGGGAGATCGTTTTGCAACAACACACAGTCTTAAATAGTTAGCGTCTATTCAAATAGCCCCTGTACTGAGCCTGAGCCTGGTCTGCAGCCCTCGGCCTGAGGCTGGAAGGGGATGGGGACACTGGCCCTTTGCAGCCACTACTCACAGCTGTCATGGAAACGCAGCGTCATAGTGGCAATGCTACTGTTTCACCTGTGCTGCCTGCAAGTATGGGCATCCTGTCGCATCCTGAGGTGCAACTCTGACTTTGTAGCTGTCACCCTGGACCTTGGGGGCAGCGGAGGGGGCggaggaggaggcagcagagAGGGCAATGCGGGCTACTGCAGCGCCCTCCGCTCCTATGCCATGTGTACCCGCCGCATGGCCCGTGCCTGCCGGGGCGACCTGGTCTACCACTCGGCCGTGCAGGGCATCGAGGACCTCCTCATCCAGCACAGCTGCCCCAGGACAGGCCCCACCGCTCAGCCCCGGCCCCTGCCACAGGCCCCCATCTCTGGGGACGCCTGTATCTATGAGAAGGGCTACCTCCAGCGTGAGGGCCGGACCCCTGACTATCTCCACTGTGGAGTGTTCGGGGATCCCCATGTTCGCACCTTCCGTGATGAGTTCCAGACGTGCGCTGTACAAGGGGCCTGGCCACTGATAGATAATGAGTATCTATACGTTCAGGCAACAAGCGCCCCCATGAGAGGAGGGGTGTATGCCACGGCTCTCATCACGATTACCATCATCTTTAAGAACTGGCGCCAGTGTATCGAGCAGCAGATCTACCAGGCGGAGCTGGACAACGTTCCCGCAGCCTTCGTGGACGGCTCAGTGACCAGCGAGGAGAGGCAGGGCCAGCACAGCCTGAGCGTCCACTCTGATCTGCCTGGGCTCCAGGCTGAGATCCGTGCTGCCCACATCGGCACCACCCTGGTGGTGCGTCAGAGTGGGCGGTCCCTGGGCCTGTCAGTACGCTCGCCAAGTGCCATTGCTGAAGCATTCACCCCCGAGCAGGACCTGCAGCTGTGTGTATATGGCTGCCCACCTTCACAGCGCCTAGAGACGCTACCCagcccctcttcttcctcctccctttcctcctcttcctccagccaGCCCTCTGCTGCAGCCCATGTCCACTGTGCAGCCCTCCTCCCTGCTAGGGACATCTACTACCAGGCCTGCCTGTTTGACCTGCTGGCCACAGGGGACCTCAACTCCAGCACGGCGGCTGTGGCGGCCCTGGAAGACGCCCGGGGAATGATCTCAGACCCCAATAAGGTGCATCTGCTACTGGTGGGCAATGCCGATGGTAGTAGCCCATGTCTGCCTCTGATCCTGGCTGTGGCTGTCCTATCAGAGCATCTGTTGGCTCTGTGGACGGGGCAGTGTTTATGAACTAGTGACTGGTAGGAGCTGTGGGCATAGCATTAGCCACACTGACTCTGACTGAGcagatgctttaaaaaaaaatcttgatGGCCTTGTTTCATAAACAACAGGCATCACCTTTGACTGGTTGGAACCCAGTGGCATTGTGCCTGGTTACAGAGGTCAATGTTTCCCTGATTTGTTTTCTTCCAGCAGGAGAAGAATGTTGATAGGAATAAATACAGGTCAATGCTCTCCGTGAGGATAGAAGTGAACTATTGAAGCCTGACACTAGTTGTGTTGATTCTAATCCCTTAACTACGCTGagacaaatgtattaaaacaataTGTATTATCCATCTCAGCACAGAGGATGGCCTGTTGAATAATCCAGATAGTTAATGGAATCTTCAactctttttttttatatactttctgttattttctgtttatgATGGAGGGGAATTTAGTAGTTTGTTTATAGTAAATATAATACTACAGTGGTATCATCCTCTGTAAAGAAACTAATTTATCACTAATTTATTACGTCATCTTTGTGTGTCTACATTTGGTTTGCAGTGAGTTGTAATAACGTCTCGATTCATTTCATAAGGGACTGTTTTTGAATGTACGTTTGGTTCATATGTCAGTATTTGTAAGACAATGTTTACAATGTATTGTTCATCCTGTTCATATTTTTACCTACTGTAGTTGCCAAAGTAAAAAAGATATCTTCCCAAAGTTACTCATACCATCTTTCTAAAACAATAGAGATCAAACAAGGAGTCAATTAAAATAATATATTGTTTTCCAGATGAAATTATCTCCAATTTCCTTCCATGTAATAATGTGATCTCTGTCAAGGATAAAACATATTTATACCTACAGATTCTAATATATTTCCCTTTGTGAGTTTTATTAAATTTGatcgtttttttccccc

Function

NR:

description
hemojuvelin-like

GO: NA

KEGG:

id description
K23100 HJV, RGMC; hemojuvelin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593101.2 False 2559 mRNA 0.50 5 21091787 21100107
XM_021593102.2 False 2466 mRNA 0.50 4 21091787 21100107
XM_021593108.2 False 2455 mRNA 0.51 4 21091787 21100107
XM_036971684.1 True 2569 mRNA 0.50 5 21091787 21100107

Neighbor

gene id symbol gene type direction distance location
si:dkey-12j5.1 LOC106580016 coding downstream 123419 20927954 ~ 20968368 (-)
glipr2l LOC106605424 coding downstream 439735 20648378 ~ 20652052 (-)
LOC110512925 NA coding downstream 496232 20590446 ~ 20595555 (-)
trnat-ugu-32 NA coding downstream 499659 20592056 ~ 20592128 (-)
trnat-ugu-31 NA coding downstream 508435 20583280 ~ 20583352 (-)
LOC110513063 thbs3 coding upstream 12115 21112222 ~ 21133895 (-)
LOC110513075 NA coding upstream 35970 21135542 ~ 21152356 (-)
LOC110513123 LOC106580095 coding upstream 68033 21168140 ~ 21172480 (-)
LOC110513176 LOC106605439 coding upstream 98658 21198765 ~ 21230066 (-)
dcst1 dcst1 coding upstream 130562 21230669 ~ 21239790 (-)
G234166 NA non-coding downstream 579 21088585 ~ 21091208 (-)
G234102 NA non-coding downstream 107213 20984165 ~ 20984574 (-)
G234069 NA non-coding downstream 175881 20914147 ~ 20915906 (-)
G234013 NA non-coding downstream 262515 20823376 ~ 20829272 (-)
G233957 NA non-coding downstream 359452 20731978 ~ 20732335 (-)
G234171 NA non-coding upstream 672 21100779 ~ 21101316 (-)
G234173 NA non-coding upstream 2794 21102901 ~ 21103148 (-)
G234179 NA non-coding upstream 10832 21110939 ~ 21111461 (-)
G234187 NA non-coding upstream 27019 21127126 ~ 21127334 (-)
G233513 LOC106561082 other downstream 539790 20551783 ~ 20551997 (-)
G233052 LOC106605397 other downstream 1335169 19756204 ~ 19757908 (-)
G232980 NA other downstream 1443158 19648086 ~ 19648629 (-)
rims2a LOC106579570 other downstream 1492686 19416054 ~ 19652601 (-)
G234224 LOC106605437 other upstream 78490 21178597 ~ 21180682 (-)
LOC110513321 LOC106580205 other upstream 345381 21438546 ~ 21455972 (-)
G234600 NA other upstream 369554 21469661 ~ 21469945 (-)
G234621 NA other upstream 398301 21498408 ~ 21498832 (-)
G235092 LOC100194668 other upstream 638738 21738845 ~ 21743411 (-)

Expression


Co-expression Network