LOC110513063 (thbs3)


Basic Information

Item Value
gene id LOC110513063
gene name thbs3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21112222 ~ 21133895 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593116.2
CTATATTATGTCTGTATAACATGAGAATTTAGAAAGTTGGAAACACCGCACGCCTCAGTTTATAGCAGGCGAATgaactccctctctcactgtcacaTCCACTCTGTGCGGACGAGGTACTTGGCTGGAGCGCGCCCGTAAGAAGCCAGTCGACATTTGTAACTGTTCTTAAACCTACATTCTGCGGTCAACTCACTCTGCAGACTTATTTTTGTTCACTTTGAAATTAAGCTCCATTCATCAACATCAAACTGGACTCTCGGCGGATAGTAATTTACTGCTGTTGACTTTCTTGTCAACTTTCACACACCGTTTCTTGGGACATGGGTGCGAGGCGCGATGTGCCAACTTTTCTGGCTCTATCCACATTTCTATTCGTTGCAACATGTGAACCAATGGATCAGAAATATATgcaagtCATTGACATGCTAACCCTGGACTCCAAGACCAGTGTGTCTGCGGTGGAGAAGGTGACAGGTGCCATGAGTGTGTTCAGTGACATCTACATCGTGTCCACATTCCGCTTGCCTCCCAAGATGGGAGGGGTGCTGCTGGGCTTCTACAGCAAAGAGGAGAACAAGAAGTACCTGGAGCTGGCCATCATGGGAAAGATCAACAAAGCTCTGGTGCGTTACGTGAGGGAGGATGGCAAAATTCACACAGTGAACCTCCAGAGCACAAACCTGGCTGATGGTCGCACACACTCCATTATTCTCCGGATCGGAGGCCTGCGCAGAGACAACCTACACCTGGAGCTCTACGTCAATTGTCGATTGGCTGACTCCAGCCAGGGCCTCCCTCCATTGGTCCCTCTCCCCGCGGAGAAGGTGGAGATTCGTAATGGCTTCAAGGCCTACGCAAGGCTACAGGGTGCTGTGGAGTCCCTCAAAATTGCGCTAGGGGGCAGTGTGGCCAAAGCAGGTACCCTGACAGACTGTCCATTCCAGGGGGATTCATCAGTCTACAGCACAGTCGGTGCGACTGCAGAAGTGAACTCCATTCTAGGAGACCACACAAAGGCTCTGATTGGTCAGCTGATCATCTTTAACCAGATCCTAGGAGAGCTGCGAGAGGACATCAGAGAGcagGTGAAGGAGATGTCCCTGATTAGGAACACCATTCTGGAGTGCCAAGTGTGTGGCTTCCACGACCCTCGTTCCCGCTGCTCCCCCAACCCCTGTTTTAAGGGCCTGTCCTGCATGGAGACCTTTGACTACCCAGGGTACCGCTGTAGTCCCTGTCCGGAGGGCATGACGGGCAACGGAACCCACTGCCAAGACATTGACGAGtGTTCCATAGCCCAGCCCTGCTACTCTCCAGGTGCGTGTATAAACACAGTGAAGGGTTTCAGCTGTGAGCTCTGCCCCCCTGGTCTCTGGGGCCCACCCCTCTTTGGGGTCGGACTGGAGTACGCCAACCACCACAAacagGAGTGTGCAGACATTGATGAGTGTATTGAAGTTGCCAACGCCTGTGTGCCCCACTCCATGTGTACCAACACCATCggCTCATTCAGGTGTGGTGGCTGTAAGGTGGGTTACTTGGGGAACCAGACAGTGGGCTGCGTGCCCCGTAGGTCCTGTGCCACACTCAGCTTTAACCCTTGTGATGCCAACGCCCACTGCATTATAGAGAGGAACGGAGAGGTGTCCTGTGCGTGCAACATTGGCTGGGCCGGTAACGGGAACACTtgtggcacagacacagacattgaTGGATACCCAGACCGCTCTCTGCCCTGTATGGACAATGACAAGCACTGTAAACAGGACAACTGTGTTTACACACCCAACTCAGGCCAGGAGGACGCAGACAACGACGGCATCGGAGACCAGTGTGACGAGGACGCAGATGGGGACGGCATCAAGAATGTGGAGGATAACTGTCGACTAGAACCCAACAAAGATCAGCAGAACTCAGACACAGACTCTTTCGGTGACGCCTGTGACAACTGTCCCAATGTCCCTAACATTGACCAGAGGGATACGGACAACAACGGGCAAGGAGACGCCTGTGACAATGACATAGATGGAGATGGTATCCCCAACGTGCTAGACAACTGCCCCAAAGTCCCCAAccccatgcagacagacagggatggaGACGGGGTAGGAGACGCCTGCGACAGCTGCCCTGAGATCAGCAACCCCATGCAGACGGACATTGACAATGACCTGGTGGGGGATGTGTGTGACACTGACCAGGACACGGATGGGGACGGTCACCAGGATTCCAGGGACAACTGCCCTGACCATCCCAACAGCTCCCAGCTGGACTCGGACAATGATGGCCTTGGGGACGACTGTGACGATGACGATGACAATGACGGATTCCCAGACGTACAAGACAACTGCAGACTTATCACCAATCCCAACCAGAAAGATTCCAACAGTAACGGGGTGGGCGATGTGTGTGAGAACGACTTTGACAATGATTCAGTCTGGGATCTGATTGATGTGTGCCCTGAGAGTTCAGAGGTTACACTGACAGACTTCAGAGCCTATCAGACAGTCATTCTGGATCCAGAGGGCGATGCCCAGATCGATCCCAATTGGGTGGTGCTCAATCAGGGCATGGAAATAGTTCAGACCATGAACAGTGATCCTGGTTTAGCTGTGGGCTACACAGCGTTCAACGGGGTGGACTTTGAGGGCACCTTCCACATCAACACGGTGACGGACGACGACTATGCAGGCTTCATCTTCGGCTACCAGGACTCCTCTTCCTTCTACGTGGTGATGTGGAAACAGACAGAGCAGACCTACTGGCAGTCGACACCCTTCAGGGCCATGGCCCAACCTGGCCTGCAGCTCAAAGCAGTGAAGTCCCGTACAGGGCCTGGTGAGTACCTGCGTAACGCCCTGTGGCACACAGGGGACACCAACGAGGAGGTGAAGCTGCTGTGGTCGGACCCACGGAACGTTGGCTGGAGAGACAAGACATCTTACCGCTGGCAGCTCAGCCACAGGCCCCAGGTGGGCTACATCAGGGTGAAGTTATATGAGGGGACGGAGATGGTGGCTGACTCTGGCGTGGTGATTGACACTACCATGAGAGGCGGACGACTGGGGGTCTTCTGTTTCTCCCAAGAGAACATAATCTGGTCCAACCTGCGCTACCGCTGCAACGACACTGTTCCAGATGACTTCAACCCATATCGCAAACAGGTTCTGCTGCACATCAAGGTGTGAGAGGATTCGAGGATGTGTGAGTGCTGAGGCATGTAGATGAGTAACCTGTCCAGCACTGTCTCtctacacacaaacactcacacacacactcgtattGCCTCTCAGTACAGAATTTCAACTGCTGTTAaaatgtgtgtgactgtctgcCCATGAGTGAAAGGGGAGGAGTTTCAGAGTTGTGGTAAAGGAGGAAGAAGAACCCATTTACAACATTGTTATACCAGACTGGAAAAGCAAAAAGGTACTAGACTTTGGAAGAAAGTATACATGATAATGAATGTATGTAGGACTGTGTTACTTCTGGGTTTGAGTTGCTGTCCTTGCCTTCAATTTCACTGTATGAACGGTGGTTGTGTGAATGATAGCGGTTAACCGTTGAGTTTGACTGTTGCGTTAGGTATGAGTGCTCTTGttgctttgtgtttgtgtatttacAGCTATCATAGGAATAAATTGATTATATTTTGTGTTTTAAGACTGAACAGTTAaaggatgttttttttaaatctcatatctaactgtaaaataaaaaacataagcTAGTGTTACAGGGATGATGGGAATTTGAAAAATACTGTACATCCTCTGAATATGAAACTCCGGGTAACTCTGTCATGACCAGATAATGTCATCTCAGCAGCAAAATACAGATCTGTCACAAGAGACTGTAGACTTGCAGTTATTTAGCCATATTACTTTAAGCCTTTAATAGTGGAATTATGTCCCTAATTTGAATAAATGTGGATTCTAGTGTATACTTTCCTGGGCATCTGATTCTGTGCCCAGTAATTGAATATGAAATAAAGCCTTATTGGATGTGTTTCTTTAAGTCATCTTTAACTGATTAGTTAAACAGAAGCATAAACAAAGAGCAACACAGTCTTTGTccacaaaaaaataataaacaatTGAATGTCTTAATGTTTATTTGACCTTTGTGATTCTGTACACAACAAGAATGCTAATGAATGATACGACTtagaaaaaaaaactgtcaagAGCAACTGTGAGTGTGCACTGCTGTTCCGAGGTCATCCAGTCAGTGAAGTATGTGGTGACACTGGTGCTAACTGTATCTAATCGTTGAGTGCTGTGGTTGTCATCATACCTCCCAGGAGCAGACAGACCCCAGGGCTCAACTGACTGAACTGCCCAgtctgtctccactgtcttcTTCTTTGTTCCATATTAATAGCCAGTCATAGAAATCCATATACCTTGTACAGAACTTGCTATATTTAATATCATATATTATGTGTCACATAGCCTAATTACGTTATTCTTATGTCggtgtagtaacactgtaataACTCAATGATGACACTGTATTTTAACATGTTACATTGTAACTTGCTTTGTAATGGAGTTGAGCATTTTTGTGCTACCACATAAGTGAAATAAAGCCTCTTCCCATTCTACTTGTGTAATAACAACAAAACAAGTTCCCTGCTGAGGACAGACTTGAAAATGAATTTGGATTCCATTTAGAATGGAGTATTTTAAGCATTATTCTATTAAGCTGGAGATGTCCTGCTATTGACCCCTGACTACTGTGTCTGGATTCCAATCTGATCATTCATTCTCTTTGCTCTATCCTGACTAACTCTCTCACAGGTGTGAATAGATGCAATATGATAGGCATTTGTCATCCTAGGTCTTGTTGGCCATACAGAGTTTGTGCAGTACTGCTTCCTATCCCAATATGAGGGAACTTTCAGAGTGAAGTCACAAGGGCAGAGGGAAGAGAATGACTTAGTGGAGTTGGCAAAGCTCCTCACGTGgcagctagccagccagtgtCTGGTGCGGACAGTGGGACCGTTTGGAAGCAGAGGCTTGCCAACTGTA
>XM_036971713.1
AAGAAACTCCCTCTGCTTTCAATGAAATCTCTAGGGGCTGAGTTTAATGACCTTGAAAAATGATCTGGAAAATAATTCTTGTTTTAAGAGCGGGGAAAAAACGCAACACTGCATGTGCGCAATTTGCAACAATGAACAGAGGTCAGAAATTCGTCTGGATTTAGTTTGGTAAATAGTGCTATAACGtCATTGACATGCTAACCCTGGACTCCAAGACCAGTGTGTCTGCGGTGGAGAAGGTGACAGGTGCCATGAGTGTGTTCAGTGACATCTACATCGTGTCCACATTCCGCTTGCCTCCCAAGATGGGAGGGGTGCTGCTGGGCTTCTACAGCAAAGAGGAGAACAAGAAGTACCTGGAGCTGGCCATCATGGGAAAGATCAACAAAGCTCTGGTGCGTTACGTGAGGGAGGATGGCAAAATTCACACAGTGAACCTCCAGAGCACAAACCTGGCTGATGGTCGCACACACTCCATTATTCTCCGGATCGGAGGCCTGCGCAGAGACAACCTACACCTGGAGCTCTACGTCAATTGTCGATTGGCTGACTCCAGCCAGGGCCTCCCTCCATTGGTCCCTCTCCCCGCGGAGAAGGTGGAGATTCGTAATGGCTTCAAGGCCTACGCAAGGCTACAGGGTGCTGTGGAGTCCCTCAAAATTGCGCTAGGGGGCAGTGTGGCCAAAGCAGGTACCCTGACAGACTGTCCATTCCAGGGGGATTCATCAGTCTACAGCACAGTCGGTGCGACTGCAGAAGTGAACTCCATTCTAGGAGACCACACAAAGGCTCTGATTGGTCAGCTGATCATCTTTAACCAGATCCTAGGAGAGCTGCGAGAGGACATCAGAGAGcagGTGAAGGAGATGTCCCTGATTAGGAACACCATTCTGGAGTGCCAAGTGTGTGGCTTCCACGACCCTCGTTCCCGCTGCTCCCCCAACCCCTGTTTTAAGGGCCTGTCCTGCATGGAGACCTTTGACTACCCAGGGTACCGCTGTAGTCCCTGTCCGGAGGGCATGACGGGCAACGGAACCCACTGCCAAGACATTGACGAGtGTTCCATAGCCCAGCCCTGCTACTCTCCAGGTGCGTGTATAAACACAGTGAAGGGTTTCAGCTGTGAGCTCTGCCCCCCTGGTCTCTGGGGCCCACCCCTCTTTGGGGTCGGACTGGAGTACGCCAACCACCACAAacagGAGTGTGCAGACATTGATGAGTGTATTGAAGTTGCCAACGCCTGTGTGCCCCACTCCATGTGTACCAACACCATCggCTCATTCAGGTGTGGTGGCTGTAAGGTGGGTTACTTGGGGAACCAGACAGTGGGCTGCGTGCCCCGTAGGTCCTGTGCCACACTCAGCTTTAACCCTTGTGATGCCAACGCCCACTGCATTATAGAGAGGAACGGAGAGGTGTCCTGTGCGTGCAACATTGGCTGGGCCGGTAACGGGAACACTtgtggcacagacacagacattgaTGGATACCCAGACCGCTCTCTGCCCTGTATGGACAATGACAAGCACTGTAAACAGGACAACTGTGTTTACACACCCAACTCAGGCCAGGAGGACGCAGACAACGACGGCATCGGAGACCAGTGTGACGAGGACGCAGATGGGGACGGCATCAAGAATGTGGAGGATAACTGTCGACTAGAACCCAACAAAGATCAGCAGAACTCAGACACAGACTCTTTCGGTGACGCCTGTGACAACTGTCCCAATGTCCCTAACATTGACCAGAGGGATACGGACAACAACGGGCAAGGAGACGCCTGTGACAATGACATAGATGGAGATGGTATCCCCAACGTGCTAGACAACTGCCCCAAAGTCCCCAAccccatgcagacagacagggatggaGACGGGGTAGGAGACGCCTGCGACAGCTGCCCTGAGATCAGCAACCCCATGCAGACGGACATTGACAATGACCTGGTGGGGGATGTGTGTGACACTGACCAGGACACGGATGGGGACGGTCACCAGGATTCCAGGGACAACTGCCCTGACCATCCCAACAGCTCCCAGCTGGACTCGGACAATGATGGCCTTGGGGACGACTGTGACGATGACGATGACAATGACGGATTCCCAGACGTACAAGACAACTGCAGACTTATCACCAATCCCAACCAGAAAGATTCCAACAGTAACGGGGTGGGCGATGTGTGTGAGAACGACTTTGACAATGATTCAGTCTGGGATCTGATTGATGTGTGCCCTGAGAGTTCAGAGGTTACACTGACAGACTTCAGAGCCTATCAGACAGTCATTCTGGATCCAGAGGGCGATGCCCAGATCGATCCCAATTGGGTGGTGCTCAATCAGGGCATGGAAATAGTTCAGACCATGAACAGTGATCCTGGTTTAGCTGTGGGCTACACAGCGTTCAACGGGGTGGACTTTGAGGGCACCTTCCACATCAACACGGTGACGGACGACGACTATGCAGGCTTCATCTTCGGCTACCAGGACTCCTCTTCCTTCTACGTGGTGATGTGGAAACAGACAGAGCAGACCTACTGGCAGTCGACACCCTTCAGGGCCATGGCCCAACCTGGCCTGCAGCTCAAAGCAGTGAAGTCCCGTACAGGGCCTGGTGAGTACCTGCGTAACGCCCTGTGGCACACAGGGGACACCAACGAGGAGGTGAAGCTGCTGTGGTCGGACCCACGGAACGTTGGCTGGAGAGACAAGACATCTTACCGCTGGCAGCTCAGCCACAGGCCCCAGGTGGGCTACATCAGGGTGAAGTTATATGAGGGGACGGAGATGGTGGCTGACTCTGGCGTGGTGATTGACACTACCATGAGAGGCGGACGACTGGGGGTCTTCTGTTTCTCCCAAGAGAACATAATCTGGTCCAACCTGCGCTACCGCTGCAACGACACTGTTCCAGATGACTTCAACCCATATCGCAAACAGGTTCTGCTGCACATCAAGGTGTGAGAGGATTCGAGGATGTGTGAGTGCTGAGGCATGTAGATGAGTAACCTGTCCAGCACTGTCTCtctacacacaaacactcacacacacactcgtattGCCTCTCAGTACAGAATTTCAACTGCTGTTAaaatgtgtgtgactgtctgcCCATGAGTGAAAGGGGAGGAGTTTCAGAGTTGTGGTAAAGGAGGAAGAAGAACCCATTTACAACATTGTTATACCAGACTGGAAAAGCAAAAAGGTACTAGACTTTGGAAGAAAGTATACATGATAATGAATGTATGTAGGACTGTGTTACTTCTGGGTTTGAGTTGCTGTCCTTGCCTTCAATTTCACTGTATGAACGGTGGTTGTGTGAATGATAGCGGTTAACCGTTGAGTTTGACTGTTGCGTTAGGTATGAGTGCTCTTGttgctttgtgtttgtgtatttacAGCTATCATAGGAATAAATTGATTATATTTTGTGTTTTAAGACTGAACAGTTAaaggatgttttttttaaatctcatatctaactgtaaaataaaaaacataagcTAGTGTTACAGGGATGATGGGAATTTGAAAAATACTGTACATCCTCTGAATATGAAACTCCGGGTAACTCTGTCATGACCAGATAATGTCATCTCAGCAGCAAAATACAGATCTGTCACAAGAGACTGTAGACTTGCAGTTATTTAGCCATATTACTTTAAGCCTTTAATAGTGGAATTATGTCCCTAATTTGAATAAATGTGGATTCTAGTGTATACTTTCCTGGGCATCTGATTCTGTGCCCAGTAATTGAATATGAAATAAAGCCTTATTGGATGTGTTTCTTTAAGTCATCTTTAACTGATTAGTTAAACAGAAGCATAAACAAAGAGCAACACAGTCTTTGTccacaaaaaaataataaacaatTGAATGTCTTAATGTTTATTTGACCTTTGTGATTCTGTACACAACAAGAATGCTAATGAATGATACGACTtagaaaaaaaaactgtcaagAGCAACTGTGAGTGTGCACTGCTGTTCCGAGGTCATCCAGTCAGTGAAGTATGTGGTGACACTGGTGCTAACTGTATCTAATCGTTGAGTGCTGTGGTTGTCATCATACCTCCCAGGAGCAGACAGACCCCAGGGCTCAACTGACTGAACTGCCCAgtctgtctccactgtcttcTTCTTTGTTCCATATTAATAGCCAGTCATAGAAATCCATATACCTTGTACAGAACTTGCTATATTTAATATCATATATTATGTGTCACATAGCCTAATTACGTTATTCTTATGTCggtgtagtaacactgtaataACTCAATGATGACACTGTATTTTAACATGTTACATTGTAACTTGCTTTGTAATGGAGTTGAGCATTTTTGTGCTACCACATAAGTGAAATAAAGCCTCTTCCCATTCTACTTGTGTAATAACAACAAAACAAGTTCCCTGCTGAGGACAGACTTGAAAATGAATTTGGATTCCATTTAGAATGGAGTATTTTAAGCATTATTCTATTAAGCTGGAGATGTCCTGCTATTGACCCCTGACTACTGTGTCTGGATTCCAATCTGATCATTCATTCTCTTTGCTCTATCCTGACTAACTCTCTCACAGGTGTGAATAGATGCAATATGATAGGCATTTGTCATCCTAGGTCTTGTTGGCCATACAGAGTTTGTGCAGTACTGCTTCCTATCCCAATATGAGGGAACTTTCAGAGTGAAGTCACAAGGGCAGAGGGAAGAGAATGACTTAGTGGAGTTGGCAAAGCTCCTCACGTGgcagctagccagccagtgtCTGGTGCGGACAGTGGGACCGTTTGGAAGCAGAGGCTTGCCAACTGTA

Function

symbol description
thbs3 Enables heparin binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within bone trabecula formation; growth plate cartilage development; and ossification involved in bone maturation. Located in perinuclear region of cytoplasm.

NR:

description
thrombospondin-3a-like

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0008201 heparin binding molecular_function

KEGG:

id description
K04659 THBS2S; thrombospondin 2/3/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593116.2 False 5039 mRNA 0.48 22 21112222 21126956
XM_036971713.1 True 4808 mRNA 0.48 22 21112222 21133895

Neighbor

gene id symbol gene type direction distance location
LOC110513019 LOC106580057 coding downstream 12115 21091787 ~ 21100107 (-)
si:dkey-12j5.1 LOC106580016 coding downstream 143854 20927954 ~ 20968368 (-)
glipr2l LOC106605424 coding downstream 460170 20648378 ~ 20652052 (-)
LOC110512925 NA coding downstream 516667 20590446 ~ 20595555 (-)
trnat-ugu-32 NA coding downstream 520094 20592056 ~ 20592128 (-)
LOC110513075 NA coding upstream 2182 21135542 ~ 21152356 (-)
LOC110513123 LOC106580095 coding upstream 34245 21168140 ~ 21172480 (-)
LOC110513176 LOC106605439 coding upstream 64870 21198765 ~ 21230066 (-)
dcst1 dcst1 coding upstream 96774 21230669 ~ 21239790 (-)
LOC110513266 LOC106580174 coding upstream 174949 21308844 ~ 21320007 (-)
G234179 NA non-coding downstream 761 21110939 ~ 21111461 (-)
G234173 NA non-coding downstream 9074 21102901 ~ 21103148 (-)
G234171 NA non-coding downstream 10906 21100779 ~ 21101316 (-)
G234166 NA non-coding downstream 21014 21088585 ~ 21091208 (-)
G234102 NA non-coding downstream 127648 20984165 ~ 20984574 (-)
G234223 NA non-coding upstream 40786 21174681 ~ 21175325 (-)
G233513 LOC106561082 other downstream 560225 20551783 ~ 20551997 (-)
G233052 LOC106605397 other downstream 1355604 19756204 ~ 19757908 (-)
G232980 NA other downstream 1463593 19648086 ~ 19648629 (-)
rims2a LOC106579570 other downstream 1513121 19416054 ~ 19652601 (-)
G234224 LOC106605437 other upstream 44702 21178597 ~ 21180682 (-)
LOC110513321 LOC106580205 other upstream 311593 21438546 ~ 21455972 (-)
G234600 NA other upstream 335766 21469661 ~ 21469945 (-)
G234621 NA other upstream 364513 21498408 ~ 21498832 (-)
G235092 LOC100194668 other upstream 604950 21738845 ~ 21743411 (-)

Expression


Co-expression Network