LOC118946533


Basic Information

Item Value
gene id LOC118946533
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21166550 ~ 21169783 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041413.1
ctctaaccacctgactcacgaggagcctgcctgttacgcgaatgcagtaagaagccaagGTTCTTAAGCCAGAGCTCCAGGGCGTATTTGGTACCAGTGCTAACCCGCTCCACATCCTCTCCACTATTCGGGGCCCGGTTACACAAAACAGACAATGGCAAATCTGACTCACTGAGCACACCTTCCGGAGAGACCTCCGATACACTGGAGAACCAACGCCACAGAAACAAAATGTACATTACTTTGTGGATGTGATGTACCTTATGGTTGGAGCCACGCCCTCCAGCGGTGTCACAGAACCCTCCTCTCCGTCCACGGCGGATACGATGGCCTTGACCAGCGAGGCGTCCACCCACAGACAGCCACTGACCTCAGCGGGCTCGGGGCGCAGAGAGGCCTAGAATAAAGATGGTCTTTAGTGAGTCAGAggcattctctttgatttggctTTGTGTGCCTTTAATGATAACACCAGGCAGACAGAGACCAACAggacagtcaggcagacagacagacacctggaG
>TU267302
cctggaGCTGCTGGTGTGTGAGGGAGGTGTTTAGGAGCATGTAGGTGACCACATGGTGCCTCTGTGGCATCCCTCTGCTCAGCATGGGCGGGAAAACTGACTCCCAGAGCCCCAGCAGCTGAGCTGAGACGTCTCCAGGGTCCAGCTTCAGTCCTGTCTCCTCCCTCAGCTCCCTCAGCCCAGCATCCAGGAGCTGACAAACAAGAGAGATatgaggcaaacacacacacgaagcTTGATTGAGCTAAAAGGGAATTGACCACAGAGACCATGAGGGGGGGTTGAAACCACAGGCAAATACACTTATGAGGAATAATCTCATTTATCTTCCACTGTTTAATATCTA

Function

NR:

description
nucleoside diphosphate-linked moiety X motif 17-like isoform X2

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041413.1 False 524 mRNA 0.54 3 21166550 21169290
TU267302 True 346 lncRNA 0.37 2 21169284 21169783

Neighbor

gene id symbol gene type direction distance location
LOC110513109 muc1 coding upstream 2512 21157176 ~ 21164038 (+)
itga8 LOC106580029 coding upstream 75258 21026137 ~ 21091292 (+)
mindy3 LOC106580009 coding upstream 144193 20968444 ~ 21022357 (+)
LOC118946512 LOC106579994 coding upstream 255137 20846997 ~ 20911413 (+)
LOC110503853 LOC106579991 coding upstream 383234 20758809 ~ 20783316 (+)
dcst2 dcst2 coding downstream 70745 21240035 ~ 21263153 (+)
LOC110513224 LOC106580132 coding downstream 96128 21265418 ~ 21269804 (+)
trim33l LOC106580136 coding downstream 101226 21270516 ~ 21281833 (+)
zgc:171704 LOC106580162 coding downstream 114207 21283497 ~ 21285741 (+)
LOC110513274 LOC106580182 coding downstream 188155 21357445 ~ 21360824 (+)
G233840 NA non-coding upstream 34006 21132313 ~ 21132544 (+)
G233830 NA non-coding upstream 55290 21111039 ~ 21111260 (+)
G233824 NA non-coding upstream 58861 21107485 ~ 21107689 (+)
G233820 NA non-coding upstream 66372 21096997 ~ 21100178 (+)
G233753 LOC106580016 non-coding upstream 202395 20963756 ~ 20964155 (+)
G234215 NA non-coding downstream 5129 21174419 ~ 21174623 (+)
G234217 NA non-coding downstream 7111 21176401 ~ 21176696 (+)
G234229 LOC106580111 non-coding downstream 45099 21214389 ~ 21215691 (+)
G234253 NA non-coding downstream 62883 21232173 ~ 21233859 (+)
G234299 NA non-coding downstream 78073 21247363 ~ 21247655 (+)
G233545 NA other upstream 557825 20608293 ~ 20608725 (+)
G233521 LOC106579937 other upstream 600838 20558776 ~ 20565712 (+)
LOC110512505 LOC106579702 other upstream 1321898 19821356 ~ 19844652 (+)
G231983 LOC106597055 other upstream 1932255 19226366 ~ 19234295 (+)
G231438 NA other upstream 2314568 18851249 ~ 18851982 (+)
G234322 dcst2 other downstream 94785 21264075 ~ 21264506 (+)
G234340 LOC106580151 other downstream 117436 21286726 ~ 21287002 (+)
kiaa0319 LOC106580477 other downstream 848304 22017579 ~ 22037490 (+)
LOC110503910 LOC106580557 other downstream 889252 22057484 ~ 22068080 (+)
G235426 LOC106581355 other downstream 1135203 22303641 ~ 22304906 (+)
G233869 NA non-coding upstream 1420 21167625 ~ 21167864 (+)

Expression


Co-expression Network