LOC110513123 (LOC106580095)


Basic Information

Item Value
gene id LOC110513123
gene name LOC106580095
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21168140 ~ 21172480 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971762.1
AGTTAGCTACGTGTACATTTGTGTTTATATTCCTTGGACATGACAGCCAGCCATAGAAGCTAAGATCAGTGGGCAGGAAACAATTTTGTTGCATGAACCATCGACCTAGCTAACAAGGCAGGAGCCCACTAGATAGATTGATAGCTAGAGAATAATTTACAACCATGGAAAAAGTCACGAAAATACTGGTTCATCTTTCGAAGAATAATGTCGCACCGCAATGTGCCCGTTTTGCACAGAGCATAACAGGTCATTTTACAGAGACTCTTGATGAGGTGGAGGTGAAGTGTTCTTTGGAGAACAATCGATTTACACTGTGTGAGTGCGAGAAGGGGAGAGGAATTCCGCTGAAGAGGGCAACCTTTTGCCCCTTCAAGTATCTGTCTGTCGCAGAGGCAGCTGCAATCCCATTGGATGTTCAGAGCCGCGGAGTGGACGTGGGGGTTGCTATTCTTCTgcagtcagccaatcagaaggTGTTGTTAACTCGACGGGCGTCCAGTCTCCGCATTTTCCCCAATGTGTGGGTTCCACCAGGTGGCCATGTGGAACTGGATGAGAGGCTCCTGGATGCTGGGCTGAGGGAGCTGAGGGAGGAGACAGGACTGAAGCTGGACCCTGGAGACGTCTCAGCTCAGCTGCTGGGGCTCTGGGAGTCAGTTTTCCCGCCCATGCTGAGCAGAGGGATGCCACAGAGGCACCATGTGGTCACCTACATGCTCCTAAACACCTCCCTCACACACCAGCAGCtccagGCCTCTCTGCGCCCCGAGCCCGCTGAGGTCAGTGGCTGTCTGTGGGTGGACGCCTCGCTGGTCAAGGCCATCGTATCCGCCGTGGACGGAGAGGAGGGTTCTGTGACACCGCTGGAGGGCGTGGCTCCAACCATAAGTGTATCGGAGGTCTCTCCGGAAGGTGTGCTCAGTGAGTCAGATTTGCCATTGTCTGTTTTGTGTAACCGGGCCCCGAATAGTGGAGAGGATGTGGAGCGGGTTAGCACTGGTACCAAATACGCCCTGGAGCTCTGGCTTAAGAACCTGGAGGGACAGGGGACCCGATGTTAACTGTCTTCCCTAAACCTGGATGTCTAGCCCTGTGATGAAGTGACTTCCTGGAGGATGAAATCACTTCAAGGAGTTTGCCTTAACCGGTGAAGGTCACCTAAAGTGAACTATCATCTTTCAAAAAAATCTTGTACATATTAACCAATAATGAactttgggtgaactatccctttaatatcaGCAGCAACACCTACAAGTCTTATATGGCTGTTTGAGGGCTTTGCATGAGCTATCAATTGTGTTGTGTGTAAGAACAGTTTTTATTGCAAGGGTGTTGTTGTTAGTGATGAAATGTTATGAACAAAGTGGATTTATACTGCAGATGCTTTTATGATCATTATATTCCATTTGCGCCTTCAAGCCACAAGATGGCAATGCATAGCCTACACAGTGATTTCACATTTGGAGACTAGTGTGAAACATCAGAATTCTGAGTTAAGTTTACATAATTATCTAgacttgtaaataagaatgtgttcttattaactgactcgcctggttaaataaaaatgtatacaaatatttta
>XM_036971768.1
AGTTAGCTACGTGTACATTTGTGTTTATATTCCTTGGACATGACAGCCAGCCATAGAAGCTAAGATCAGTGGGCAGGAAACAATTTTGTTGCATGAACCATCGACCTAGCTAACAAGGCAGGAGCCCACTAGATAGATTGATAGCTAGAGAATAATTTACAACCATGGAAAAAGTCACGAAAATACTGGTTCATCTTTCGAAGAATAATGTCGCACCGCAATGTGCCCGTTTTGCACAGAGACTCTTGATGAGGTGGAGGTGAAGTGTTCTTTGGAGAACAATCGATTTACACTGTGTGAGTGCGAGAAGGGGAGAGGAATTCCGCTGAAGAGGGCAACCTTTTGCCCCTTCAAGTATCTGTCTGTCGCAGAGGCAGCTGCAATCCCATTGGATGTTCAGAGCCGCGGAGTGGACGTGGGGGTTGCTATTCTTCTgcagtcagccaatcagaaggTGTTGTTAACTCGACGGGCGTCCAGTCTCCGCATTTTCCCCAATGTGTGGGTTCCACCAGGTGGCCATGTGGAACTGGATGAGAGGCTCCTGGATGCTGGGCTGAGGGAGCTGAGGGAGGAGACAGGACTGAAGCTGGACCCTGGAGACGTCTCAGCTCAGCTGCTGGGGCTCTGGGAGTCAGTTTTCCCGCCCATGCTGAGCAGAGGGATGCCACAGAGGCACCATGTGGTCACCTACATGCTCCTAAACACCTCCCTCACACACCAGCAGCtccagGCCTCTCTGCGCCCCGAGCCCGCTGAGGTCAGTGGCTGTCTGTGGGTGGACGCCTCGCTGGTCAAGGCCATCGTATCCGCCGTGGACGGAGAGGAGGGTTCTGTGACACCGCTGGAGGGCGTGGCTCCAACCATAAGTGTATCGGAGGTCTCTCCGGAAGGTGTGCTCAGTGAGTCAGATTTGCCATTGTCTGTTTTGTGTAACCGGGCCCCGAATAGTGGAGAGGATGTGGAGCGGGTTAGCACTGGTACCAAATACGCCCTGGAGCTCTGGCTTAAGAACCTGGAGGGACAGGGGACCCGATGTTAACTGTCTTCCCTAAACCTGGATGTCTAGCCCTGTGATGAAGTGACTTCCTGGAGGATGAAATCACTTCAAGGAGTTTGCCTTAACCGGTGAAGGTCACCTAAAGTGAACTATCATCTTTCAAAAAAATCTTGTACATATTAACCAATAATGAactttgggtgaactatccctttaatatcaGCAGCAACACCTACAAGTCTTATATGGCTGTTTGAGGGCTTTGCATGAGCTATCAATTGTGTTGTGTGTAAGAACAGTTTTTATTGCAAGGGTGTTGTTGTTAGTGATGAAATGTTATGAACAAAGTGGATTTATACTGCAGATGCTTTTATGATCATTATATTCCATTTGCGCCTTCAAGCCACAAGATGGCAATGCATAGCCTACACAGTGATTTCACATTTGGAGACTAGTGTGAAACATCAGAATTCTGAGTTAAGTTTACATAATTATCTAgacttgtaaataagaatgtgttcttattaactgactcgcctggttaaataaaaatgtatacaaatatttta
>XM_036971752.1
GTAGTTAGCTACGTGTACATTTGTGTTTATATTCCTTGGACATGACAGCCAGCCATAGAAGCTAAGATCAGTGGGCAGGAAACAATTTTGTTGCATGAACCATCGACCTAGCTAACAAGGCAGGAGCCCACTAGATAGATTGATAGCTAGTAAGCAAAAAACAGCTTGGGAATTGATCATAATAATAACGGCTAGCTATAGAGTTAGCTTGGTTGTCAATTGCGCTACTAGTGCTCATTTGAACAAATGTGAAATGTGGTAATATTAGCTAGCATTGCCATTCTTATTTTGCTATCAGAAATCTGATTTGTTATCGCTCGCAGGATTATTTTACACATTGTTTTGTAAATTAGGCTAGCTATCGTTGCTAGCTATCTGTCACCTGCATTAAACTACTGTATCTATCAATAAGGAGAATAATTTACAACCATGGAAAAAGTCACGAAAATACTGGTTCATCTTTCGAAGAATAATGTCGCACCGCAATGTGCCCGTTTTGCACAGAGCATAACAGGTCATTTTACAGAGACTCTTGATGAGGTGGAGGTGAAGTGTTCTTTGGAGAACAATCGATTTACACTGTGTGAGTGCGAGAAGGGGAGAGGAATTCCGCTGAAGAGGGCAACCTTTTGCCCCTTCAAGTATCTGTCTGTCGCAGAGGCAGCTGCAATCCCATTGGATGTTCAGAGCCGCGGAGTGGACGTGGGGGTTGCTATTCTTCTgcagtcagccaatcagaaggTGTTGTTAACTCGACGGGCGTCCAGTCTCCGCATTTTCCCCAATGTGTGGGTTCCACCAGGTGGCCATGTGGAACTGGATGAGAGGCTCCTGGATGCTGGGCTGAGGGAGCTGAGGGAGGAGACAGGACTGAAGCTGGACCCTGGAGACGTCTCAGCTCAGCTGCTGGGGCTCTGGGAGTCAGTTTTCCCGCCCATGCTGAGCAGAGGGATGCCACAGAGGCACCATGTGGTCACCTACATGCTCCTAAACACCTCCCTCACACACCAGCAGCtccagGCCTCTCTGCGCCCCGAGCCCGCTGAGGTCAGTGGCTGTCTGTGGGTGGACGCCTCGCTGGTCAAGGCCATCGTATCCGCCGTGGACGGAGAGGAGGGTTCTGTGACACCGCTGGAGGGCGTGGCTCCAACCATAAGTGTATCGGAGGTCTCTCCGGAAGGTGTGCTCAGTGAGTCAGATTTGCCATTGTCTGTTTTGTGTAACCGGGCCCCGAATAGTGGAGAGGATGTGGAGCGGGTTAGCACTGGTACCAAATACGCCCTGGAGCTCTGGCTTAAGAACCTGGAGGGACAGGGGACCCGATGTTAACTGTCTTCCCTAAACCTGGATGTCTAGCCCTGTGATGAAGTGACTTCCTGGAGGATGAAATCACTTCAAGGAGTTTGCCTTAACCGGTGAAGGTCACCTAAAGTGAACTATCATCTTTCAAAAAAATCTTGTACATATTAACCAATAATGAactttgggtgaactatccctttaatatcaGCAGCAACACCTACAAGTCTTATATGGCTGTTTGAGGGCTTTGCATGAGCTATCAATTGTGTTGTGTGTAAGAACAGTTTTTATTGCAAGGGTGTTGTTGTTAGTGATGAAATGTTATGAACAAAGTGGATTTATACTGCAGATGCTTTTATGATCATTATATTCCATTTGCGCCTTCAAGCCACAAGATGGCAATGCATAGCCTACACAGTGATTTCACATTTGGAGACTAGTGTGAAACATCAGAATTCTGAGTTAAGTTTACATAATTATCTAgacttgtaaataagaatgtgttcttattaactgactcgcctggttaaataaaaatgtatacaaatatttta
>TU267717
TTGTAGTTGCCGATACTTCAAAGGTTATATGAGGTGAATTGTGCAACAGTtaaactctttttatttttaaatgtaccaCTTCATTTTCTGTTAGAGCATAACAGGTCATTTTACAGAGACTCTTGATGAGGTGGAGGTGAAGTGTTCTTTGGAGAACAATCGATTTACACTGTGTGAGTGCGAGAAGGGGAGAGGAATTCCGCTGAAGAGGGCAACCTTTTGCCCCTTCAAGTATCTGTCTGTCGCAGAGGCAGCTGCAATCCCATTGGATGTTCAGAGCCGCGGAGTGGACGTGGGGGTTGCTATTCTTCTgcagtcagccaatcagaaggTGTTGTTAACTCGACGGGCGTCCAGTCTCCGCATTTTCCCCAATGTGTGGGTTCCACCAGGTGGCCATGTGGAACTGGATGAGAGGCTCCTGGATGCTGGGCTGAGGGAGCTGAGGGAGGAGACAGGACTGAAGCTGGACCCTGGAGACGTCTCAGCTCAGCTGCTGGGGCTCTGGGAGTCAGTTTTCCCGCCCATGCTGAGCAGAGGGATGCCACAGAGGCACCATGTGGTCACCTACATGCTCCTAAACACCTCCCTCACACACCAGCAGCtccaggtgtctgtctgtctgcctgactgtccTGTTGGTCTCTGTCTGCCTGGTGTTATCATTAAAGGCACACAAagccaaatcaaagagaatgccTCTGACTCACTAAAGACCATCTTTATTCTAGGCCTCTCTGCGCCCCGAGCCCGCTGAGGTCAGTGGCTGTCTGTGGGTGGACGCCTCGCTGGTCAAGGCCATCGTATCCGCCGTGGACGGAGAGGAGGGTTCTGTGACACCGCTGGAGGGCGTGGCTCCAACCATAAGTGTATCGGAGGTCTCTCCGGAAGGTGTGCTCAGTGAGTCAGATTTGCCATTGTCTGTTTTGTGTAACCGGGCCCCGAATAGTGGAGAGGATGTGGAGCGGGTTAGCACTGGTACCAAATACGCCCTGGAGCTCTGGCTTAAGAACCTGGAGGGACAGGGGACCCGATGTTAACTGTCTTCCCTAAACCTGGATGTCTAGCCCTGTGATGAAGTGACTTCCTGGAGGATGAAATCACTTCAAGGAGTTTGCCTTAACCGGTGAAGGTCACCTAAAGTGAACTATCATCTTTCAAAAAAATCTTGTACATATTAACCAATAATGAactttgggtgaactatccctttaatatcaGCAGCAACACCTACAAGTCTTATATGGCTGTTTGAGGGCTTTGCATGAGCTATCAATTGTGTTGTGTGTAAGAACAGTTTTTATTGCAAGGGTGTTGTTGTTAGTGATGAAATGTTATGAACAAAGTGGATTTATACTGCAGATGCTTTTATGATCATTATATTCCATTTGCGCCTTCAAGCCACAAGATGGCAATGCATAGCCTACACAGTGATTTCACATTTGGAGACTAGTGTGAAACATCAGAATTCTGAGTTAAGTTTACATAATTATCTAgacttgtaaataagaatgtgttcttattaactgactcgcct

Function

NR:

description
nucleoside diphosphate-linked moiety X motif 17-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971762.1 False 1591 mRNA 0.48 9 21168140 21172478
XM_036971768.1 False 1569 mRNA 0.48 9 21168140 21172478
XM_036971752.1 False 1856 mRNA 0.46 8 21168140 21172480
TU267717 True 1537 lncRNA 0.48 6 21168170 21170498

Neighbor

gene id symbol gene type direction distance location
LOC110513075 NA coding downstream 15784 21135542 ~ 21152356 (-)
LOC110513063 thbs3 coding downstream 34245 21112222 ~ 21133895 (-)
LOC110513019 LOC106580057 coding downstream 68033 21091787 ~ 21100107 (-)
si:dkey-12j5.1 LOC106580016 coding downstream 199772 20927954 ~ 20968368 (-)
glipr2l LOC106605424 coding downstream 516088 20648378 ~ 20652052 (-)
LOC110513176 LOC106605439 coding upstream 26285 21198765 ~ 21230066 (-)
dcst1 dcst1 coding upstream 58189 21230669 ~ 21239790 (-)
LOC110513266 LOC106580174 coding upstream 136364 21308844 ~ 21320007 (-)
LOC110503878 LOC106605446 coding upstream 147712 21320192 ~ 21331512 (-)
LOC110513307 polr3gl coding upstream 203344 21375824 ~ 21388805 (-)
G234187 NA non-coding downstream 40806 21127126 ~ 21127334 (-)
G234179 NA non-coding downstream 56679 21110939 ~ 21111461 (-)
G234173 NA non-coding downstream 64992 21102901 ~ 21103148 (-)
G234171 NA non-coding downstream 66824 21100779 ~ 21101316 (-)
G234223 NA non-coding upstream 2201 21174681 ~ 21175325 (-)
G234313 NA non-coding upstream 86426 21258906 ~ 21259200 (-)
G234332 NA non-coding upstream 97371 21269851 ~ 21270146 (-)
G233513 LOC106561082 other downstream 616143 20551783 ~ 20551997 (-)
G233052 LOC106605397 other downstream 1411522 19756204 ~ 19757908 (-)
G232980 NA other downstream 1519511 19648086 ~ 19648629 (-)
rims2a LOC106579570 other downstream 1569039 19416054 ~ 19652601 (-)
G234224 LOC106605437 other upstream 6117 21178597 ~ 21180682 (-)
LOC110513321 LOC106580205 other upstream 273008 21438546 ~ 21455972 (-)
G234600 NA other upstream 297181 21469661 ~ 21469945 (-)
G234621 NA other upstream 325928 21498408 ~ 21498832 (-)
G235092 LOC100194668 other upstream 566365 21738845 ~ 21743411 (-)

Expression


Co-expression Network