dcst1 (dcst1)


Basic Information

Item Value
gene id dcst1
gene name dcst1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21230669 ~ 21239790 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964648.1
ATGGTTCATTTGAGTGAACTCCGAAGACTCAAAAAAGCACCACATTCCACCTTGGAGAGGATCAGTAGGTGGGTTCTCCCAGATTTTGCCCACCGGTTCCTCTTTAGTCGGTCACAGGAGTTCCCAGTTGCTCGTTTCTTCCTGGGAGCATTATTTGGTGCTCTCAGCGGTGCAGGTTTATTTCTGGGTCTCTTCCACAATGTCTCAATGACCAGTGTAAACAGGCTCTTAGCAGGATATGCTTTTGTTGcTGTATGTATTCTGGGTGGGGCGTTTTCCTCCTACTTTCGCTGCTCGGTCCTCCTGATCTTTCCCAGCATGCTCGGCTCTCGTGGCAGGGCGTACCTCATGCTGTTTGTCCTCTACGGCCTGTATAGGGGCCCAATCGCTAACATCCACCGTAATGTCCAGGATGTGGCCTTCTCTATGGGGTGCAACATCGAGCTCCAGATCAAACACAGCAAGGTCATGTGGAGGGAGGTGATGGAGCCCTTCATGCAGGTGGTGCAGGGTATTGTGGAGGATAATGGGGAGTTCCAGGACGAGGCTAAGAGTGTGAGCAGGAAGTTTCAGAGCATCAGGGATGAGGTCATGGGGCAGTATGGCTATGACTCCATGGAACAGGGCCCTGTTGCTGCTGGCAACAGCACCCAGGATTTGTATGCAGCAAAGACGATGATGCGATGTGACAATGTGGTGGAGCAGGGGATAGAGCGCTGTCGGGAGTGGTTTGAGGTCAAGTGGCAGGACTGCATGGATGCCATCAAAGCCCCAGTCATCAACCACATCCTGTGTGTGTCCATGAGATTCCACTTCCTCTGTGACATCATGAGAGTCATGAAGCCCTGGTGCAGGGAGGATATCCCAGTGGAAGGGAACTTTGGGCAAACATTCGACAAGCTCAACTTCTCCATTGACGCACTGTCCAGAGAATTCAGCACTAACGTGGTGCTGCAGGTACAGCCCAACTCCTCTGTCTGCTCTCACgaggaggagcagcagtcTGTGTTCGGTGTGTCAGCCCTACGGGAAGATTTCACAGAGGGTCTGAGTAAAGCCTTCGAGGAGACCAAGGTCATTCTGGACCAGTTTCTGGGCCTCatccagctcctcctctcctgcacCTTCATCACCATCTTCACCTCAGCGTTTGGCTATGCGAGGCAGTATACACAAGACATTCGCTTTGacaacatctacatcaccacctacTTCAGACAGATTGATGCCAGGAGAAAGAGAGCATTGACATTTCAGGACAAACGTTATCTGTTACCTTTGAAGAAAGCTGAGCGGGGCCTTTTCATCAACCCTCGCAGCCTGTCCATACATCCCAGTGAGCTTAAACTAGTGATGGCGGGCCTGCTGCAGGTAGTCTCTCtggctgtgtttgtctgtgtgctaTTGGCTGTCGACATGGTCCTCCACCACATCTTTGACATCATCCGCAGACACACTTTCACAAAGTTCTCCCTCACCAGCAGCCACCACATAGACATCAACGTGGGAGGACAGTCCATGATGGCCAAGCTCCTGAGGAAGACCATCGGGGCCTTCAACACCTCCTCTAACCTGGATATGCAGTCTAGTAACCAGCACTGTCTGCCCCAGCCGAGGGCTCTCACCATAGAGGACTACCTGTGGAGTTTCGTGCCCCTCTTGATGATGGCGCTGATGTGCTGCCTGCAGGTGTACAGCAACCGCCTGCGCAGGGTCATCGCTGCCTTCTACTTCCCCAAGCGGGAGAAGAGGCGCGCTCTGTTCCTTTATAACCTGCAGATCCAGAGGCGCATCTCATACACCAAAAGGCAACGGACACGACTCATGCAGCTAGGAACAGGAGAGAAAACAgtgttgtctggtgtgttgtCTAGACTGGAGAGGCTGGGCTGCAGGCTGCggtggtgctgtgtgtgtggggagaggcagaggggtgACCGGGCTGTGGAGTGCACAGTCCCAGGCTGCCAGGCGGCCTACTGTCCCCAGTGCTGGAGGGACCTGGGCAGGATCTGTTACGCCTGTGTCCCCACTAGTAACTGGGATCCAGTAGAAAGCTGTTCAGACACAGACATGTACTATGTCCATTAG
>TU267802
AGGAGACCAAGGTCATTCTGGACCAGTTTCTGGGCCTCatccagctcctcctctcctgcacCTTCATCACCATCTTCACCTCAGCGTTTGGCTATGCGAGGCAGTATACACAAGACATTCGCTTTGacaacatctacatcaccacctacTTCAGACAGATTGATGCCAGGAGAAAGAGAGCAGTAAGCAAACAAAAGATAACGTATATATATTTGGTCAGTGAACCTAAAATGTTTAATTTGGCTCTAttctccagcattttggatttgagatcaaatgtcaccttttatttgaggatattttaatac

Function

symbol description
dcst1 Acts upstream of or within response to mechanical stimulus. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in scale. Orthologous to human DCST1 (DC-STAMP domain containing 1).

NR:

description
DC-STAMP domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964648.1 False 2091 mRNA 0.53 16 21230669 21239790
TU267802 True 308 lncRNA 0.38 2 21236859 21237538

Neighbor

gene id symbol gene type direction distance location
LOC110513176 LOC106605439 coding downstream 603 21198765 ~ 21230066 (-)
LOC110513123 LOC106580095 coding downstream 58189 21168140 ~ 21172480 (-)
LOC110513075 NA coding downstream 78313 21135542 ~ 21152356 (-)
LOC110513063 thbs3 coding downstream 96774 21112222 ~ 21133895 (-)
LOC110513019 LOC106580057 coding downstream 130562 21091787 ~ 21100107 (-)
LOC110513266 LOC106580174 coding upstream 69054 21308844 ~ 21320007 (-)
LOC110503878 LOC106605446 coding upstream 80402 21320192 ~ 21331512 (-)
LOC110513307 polr3gl coding upstream 136034 21375824 ~ 21388805 (-)
LOC118946634 NA coding upstream 176421 21416211 ~ 21420278 (-)
LOC110513321 LOC106580205 coding upstream 198756 21438546 ~ 21455972 (-)
G234223 NA non-coding downstream 55344 21174681 ~ 21175325 (-)
G234187 NA non-coding downstream 103335 21127126 ~ 21127334 (-)
G234313 NA non-coding upstream 19116 21258906 ~ 21259200 (-)
G234332 NA non-coding upstream 30061 21269851 ~ 21270146 (-)
G234378 NA non-coding upstream 53085 21292875 ~ 21293076 (-)
G234387 NA non-coding upstream 66298 21306088 ~ 21306323 (-)
G234224 LOC106605437 other downstream 49987 21178597 ~ 21180682 (-)
glipr2l LOC106605424 other downstream 578973 20648378 ~ 20652052 (-)
G233513 LOC106561082 other downstream 678672 20551783 ~ 20551997 (-)
G233052 LOC106605397 other downstream 1474051 19756204 ~ 19757908 (-)
G232980 NA other downstream 1582040 19648086 ~ 19648629 (-)
G234600 NA other upstream 229871 21469661 ~ 21469945 (-)
G234621 NA other upstream 258618 21498408 ~ 21498832 (-)
G235092 LOC100194668 other upstream 499055 21738845 ~ 21743411 (-)
LOC118946878 NA other upstream 504661 21744425 ~ 21755710 (-)

Expression


Co-expression Network