trim33l (LOC106580136)


Basic Information

Item Value
gene id trim33l
gene name LOC106580136
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21270516 ~ 21281833 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593181.2
ATGGACCTCGCCGACTGCAACCGTCGTGATCGGGAGAAGCAGTTTCTGGCTAGCTGGACTATCTTTGACTATGCTCAAACTTCTTCCGttccagattttttttcagtgAAAGAATATCCGGAGTAACCTTGCGCTGGTTTAGAACCTGCGCAAGGTAAATACAAAAACATTTGAACGGTTTTTATCCTCATTTGCGTGCGAACGATCATCAATAGAGATGAACAATGGCGGGCAAAGCGGAGGTGGCTTTCCGTTTGGGCCGAACGTAGTGAAAGAATCAGGAACATATGGAAATTGTGTCCTCTGTGGGTTAACTTTAAACCATGGGCGATATCCCCAACTTCTACCCTGTTTGCACTCTATTTGTCAAGCATGCCTGCCCCCAGTCAATCCAGGGTTGCAGAAAGatctctctatctctccagcgTGTCCGTCCTGTGACATGCCATTTAATATTCTGGAAGTCAAAGATAATCTCTTTATTAAGAACTCTTCCAACGATCTCTGGACTGGTAATGTCCAGTGTACCTGTTGTGAGGGGTTCGTGGCGAGTGGCTGGTGTGTGGAGTGTGGAGAGGCGCTGTGTTCGGAGTGTGTATCTGCACACAGGAGAGTGAAGGTGACGAAGGACCACACTATCCGGCTCCAACCCCCAACAGGAGTCTCCGCTCCCACAGTGTTTTGTCCTACACACAAACATGAGCCAATCAAACTCTTCTGTTTGACCTGCGATCAGCTGACCTGTCGAGACTGCCAACTAATGGATCACAGGAACCACAGTTTCCAGTTCCTCCATGAAGCGATGGTCAGCCAGAAAGAGCAGCTTCAGTCCCTGGTGCAGAAAGTGAGGCAGCAGAGAGTTGCAGTGAAGCAGAGCCTCCTGGACATGGACGGCAGATTGCTAGACATAACACAACTCAAGTCAAAGCTGAGGGAGAGCTTGAAGAGAATGCTTTTTGCTACTGTTCAACTCTTGAAATCGAGAGCCACGTCGCTCTACAACAACATAGAGACTATGTGTAATGCCGAGGTGGCAGGGATCGAGACGAGACGGAGTGCACTAAACAAACTGGGGCAGAGGCAGGACTATGTTGCTGACTTTGCTGAGAAAGCCCTGAATGTGGAGGACTTCTTTGCCCTGCTCTCCTACAAAGGGCAGATTGGGTCCCAGTTACAGCATCTCTTGACTCAGAGTACTGAGCCCCCGGGGACCATGCTTAAGTTGCAGTTGGTGATTACGGATGACTTCAAGAAACAAATAGCTTCCTTTGGTAAACTTTTGGGTGATATTGTTCCCTTTGCCCAATCACATGTTAGTCAAGACAACCCCCTGGAAAACCAAGAAAGACCCAATGCTCCCTCTGGCCAGACCTCTTCCACTGCTCCTAACATGTCCATTCATTCTGTTCCCCCTCCACCTAACCCTGTCTTCCAGCCCCCACGCCCCTCTTACACCGCCCCATCCAACCCCCACAGTCAGCCCTCAACTTCCCAGCCCTCCACCTCCCGTGAGCCTCCTCCTTATCGCTCCCTGCCTGTCCACACCCCTTCAAGCCTTCCATTGAGCCATCCTGTGACACCCCAGCCCTGCCCATCTACACTAGCCCCATCTCACCCCTCCCTGAATATACATAATCCACCATTCTGTCTACCACCAAACCCTGCCCAGCCATCACTTGTCCCTAAACTTCATGTCCAGTCACCGTTGGTCCCCACCAACCATGCCCAGCTATCCCCTGTTCAGCCTCcaacctccccatctctccaacCACTGATCGAGGCCACACCTAGACTTTATGGTATGTTCAAGGCAACTCCTCCACCTGGACGATCTCGGAGAGGTAAGGATGGAAAGTCCTGGACGTTCCACTCATACTCACCTGTAGAGATCTGCCACCCACCTTCTGGCTCGTCCTCTCCTGCAGCCGTAGCTCAGCATCAGAAAAGGAAGTTTCCAAAATCGCAGCTACTGTGGATCCTCCATCAGCCTCCCTCTGTAAACCCCATCCCTGTCCTCCCGGTGAAAGCCCTAGCAGACTCCCCCTGTGATAGAAGCCTGCCTCCTACTGGTCTGGCAGACCCTGACCCAAACTCTCAGGCCAGGGAGAACGAGCCCACCTCTACTGTCACTGAGTTGGAGACTGACACAGAGGCAGGCAGTGCTATCGAGTTGGAGGTCCCATCAGCCTGGGCTGATAGAAAGGCAGCTGCCTGCTCGGACAGTACTTCTTCAGATCTGCCTTTCACAGGGACTTTGTCTACTGAGAGGACCTCTAATCATCTCTCTTACAGTGTCTTAACCCACACCCACCACCCCAAAGAAGAAACTGACACGGACCCTAACAGTAAACCCTATTCTGTGGGTAGGACCCATACTGCCCCCCACAACAATAAAAAGATAGCTTATGACCAACAACATGAGGATGCTAAGGCTATCAGGTCTCTTCATCGGCGTGTGAATAACTGGAGAACTGAGCTGCCAACACGCATTAGAGTGCTACTGGAGGGACCCTCTCCACTCCCCACCAGGACAGGTTCGGTGGTGGCCACTGAAATGCCAACCAGGCAACCCAACACCACCCAGCTACCAAGCTTGACCAATAGCAACAATGTTAACAACTCAAGGTCCTGGCAACCCAGGGTCTTGATGTTTCGGCTTCCCATCTCCACCCCCACTCCTGGATGCTCTCTTCCTCAGTTCCTGCTTGTCCAAGGGGCCAGCAAAGATGAGATTATTCTGCAAGAGATTGCAGAAGACCACCAGTCCCATGGCGATGACATCACACCACCAGAGTCAGACAGCCTCCTCTGGACTAAGGCCCTATCCTCCCCAGAGAGTCCCCCACTGCTTCAGTATGTGACCTGTGCGGCCTGTCACACTGTTGGCGGTTCGCTATTCTGTGTAGAGTGTGGGAGGGGCTACCACCAAGATTGTCATATCCCACCCATTGGTCCTTCCTTCTGGGAGGAGTGGAAGTGTTCACTTTGTCAGGACCTGGCCGACACCACAGACCCCTACAGTGATGACAGGCACAGGACTATGTGCCTCAGCCTAGCAGACCAGCGGAAATGTGAGCATCTCCTACTCTTTCTAAGGTGTGAGAATGACAGAAACATCCTTTGCAGCACGGCTGAGCCCCCCTCAGATTCAATATGTCTTGACTCCATACATGGAAGGCTGCTACAACATCGATCACCCCCTTACCGTACCCCCTCCGAATTTGTCTCTGATGTCTGGGTCCTTTTCGACACCATGTTGATGAACTCAAAGGACCAGGAGTTGGTTGTCAAGCTACGGGGCAGCTTTCAGAGGAAGTTAGGGGAAGTGTTTGGGACagctctccacccctccctcctcagCCACCCTAACAGCAGCTGGACTGAGACGGGGGAACCTGAGGAACCAACGGCTGCAGAGTCTCTGAAGAAGATGAGGGAGTTGCTGAATATGGCCAAAGTGCCAAAAGCTAAGAAACGTCACTCCCAGGTCAGAGTTGAAACAGATGAAAATGAAACTAAAATGAAGAAAATTAAAAAGGATGCAGACTGAAAAATTGCCATTTGAAGTGGAGATTCAGAAATGCTATGTTGTTAGTCAGTTATATACAACTGACATTgtactttttttaaattaaattaaatacaaaagGGA
>XM_036971837.1
ATGGACCTCGCCGACTGCAACCGTCGTGATCGGGAGAAGCAGTTTCTGGCTAGCTGGACTATCTTTGACTATGCTCAAACTTCTTCCGttccagattttttttcagtgAAAGAATATCCGGAGTAACCTTGCGCTGGTTTAGAACCTGCGCAAGGTAAATACAAAAACATTTGAACGGTTTTTATCCTCATTTGCGTGCGAACGATCATCAATAGAGatctctctatctctccagcgTGTCCGTCCTGTGACATGCCATTTAATATTCTGGAAGTCAAAGATAATCTCTTTATTAAGAACTCTTCCAACGATCTCTGGACTGGTAATGTCCAGTGTACCTGTTGTGAGGGGTTCGTGGCGAGTGGCTGGTGTGTGGAGTGTGGAGAGGCGCTGTGTTCGGAGTGTGTATCTGCACACAGGAGAGTGAAGGTGACGAAGGACCACACTATCCGGCTCCAACCCCCAACAGGAGTCTCCGCTCCCACAGTGTTTTGTCCTACACACAAACATGAGCCAATCAAACTCTTCTGTTTGACCTGCGATCAGCTGACCTGTCGAGACTGCCAACTAATGGATCACAGGAACCACAGTTTCCAGTTCCTCCATGAAGCGATGGTCAGCCAGAAAGAGCAGCTTCAGTCCCTGGTGCAGAAAGTGAGGCAGCAGAGAGTTGCAGTGAAGCAGAGCCTCCTGGACATGGACGGCAGATTGCTAGACATAACACAACTCAAGTCAAAGCTGAGGGAGAGCTTGAAGAGAATGCTTTTTGCTACTGTTCAACTCTTGAAATCGAGAGCCACGTCGCTCTACAACAACATAGAGACTATGTGTAATGCCGAGGTGGCAGGGATCGAGACGAGACGGAGTGCACTAAACAAACTGGGGCAGAGGCAGGACTATGTTGCTGACTTTGCTGAGAAAGCCCTGAATGTGGAGGACTTCTTTGCCCTGCTCTCCTACAAAGGGCAGATTGGGTCCCAGTTACAGCATCTCTTGACTCAGAGTACTGAGCCCCCGGGGACCATGCTTAAGTTGCAGTTGGTGATTACGGATGACTTCAAGAAACAAATAGCTTCCTTTGGTAAACTTTTGGGTGATATTGTTCCCTTTGCCCAATCACATGTTAGTCAAGACAACCCCCTGGAAAACCAAGAAAGACCCAATGCTCCCTCTGGCCAGACCTCTTCCACTGCTCCTAACATGTCCATTCATTCTGTTCCCCCTCCACCTAACCCTGTCTTCCAGCCCCCACGCCCCTCTTACACCGCCCCATCCAACCCCCACAGTCAGCCCTCAACTTCCCAGCCCTCCACCTCCCGTGAGCCTCCTCCTTATCGCTCCCTGCCTGTCCACACCCCTTCAAGCCTTCCATTGAGCCATCCTGTGACACCCCAGCCCTGCCCATCTACACTAGCCCCATCTCACCCCTCCCTGAATATACATAATCCACCATTCTGTCTACCACCAAACCCTGCCCAGCCATCACTTGTCCCTAAACTTCATGTCCAGTCACCGTTGGTCCCCACCAACCATGCCCAGCTATCCCCTGTTCAGCCTCcaacctccccatctctccaacCACTGATCGAGGCCACACCTAGACTTTATGGTATGTTCAAGGCAACTCCTCCACCTGGACGATCTCGGAGAGGTAAGGATGGAAAGTCCTGGACGTTCCACTCATACTCACCTGTAGAGATCTGCCACCCACCTTCTGGCTCGTCCTCTCCTGCAGCCGTAGCTCAGCATCAGAAAAGGAAGTTTCCAAAATCGCAGCTACTGTGGATCCTCCATCAGCCTCCCTCTGTAAACCCCATCCCTGTCCTCCCGGTGAAAGCCCTAGCAGACTCCCCCTGTGATAGAAGCCTGCCTCCTACTGGTCTGGCAGACCCTGACCCAAACTCTCAGGCCAGGGAGAACGAGCCCACCTCTACTGTCACTGAGTTGGAGACTGACACAGAGGCAGGCAGTGCTATCGAGTTGGAGGTCCCATCAGCCTGGGCTGATAGAAAGGCAGCTGCCTGCTCGGACAGTACTTCTTCAGATCTGCCTTTCACAGGGACTTTGTCTACTGAGAGGACCTCTAATCATCTCTCTTACAGTGTCTTAACCCACACCCACCACCCCAAAGAAGAAACTGACACGGACCCTAACAGTAAACCCTATTCTGTGGGTAGGACCCATACTGCCCCCCACAACAATAAAAAGATAGCTTATGACCAACAACATGAGGATGCTAAGGCTATCAGGTCTCTTCATCGGCGTGTGAATAACTGGAGAACTGAGCTGCCAACACGCATTAGAGTGCTACTGGAGGGACCCTCTCCACTCCCCACCAGGACAGGTTCGGTGGTGGCCACTGAAATGCCAACCAGGCAACCCAACACCACCCAGCTACCAAGCTTGACCAATAGCAACAATGTTAACAACTCAAGGTCCTGGCAACCCAGGGTCTTGATGTTTCGGCTTCCCATCTCCACCCCCACTCCTGGATGCTCTCTTCCTCAGTTCCTGCTTGTCCAAGGGGCCAGCAAAGATGAGATTATTCTGCAAGAGATTGCAGAAGACCACCAGTCCCATGGCGATGACATCACACCACCAGAGTCAGACAGCCTCCTCTGGACTAAGGCCCTATCCTCCCCAGAGAGTCCCCCACTGCTTCAGTATGTGACCTGTGCGGCCTGTCACACTGTTGGCGGTTCGCTATTCTGTGTAGAGTGTGGGAGGGGCTACCACCAAGATTGTCATATCCCACCCATTGGTCCTTCCTTCTGGGAGGAGTGGAAGTGTTCACTTTGTCAGGACCTGGCCGACACCACAGACCCCTACAGTGATGACAGGCACAGGACTATGTGCCTCAGCCTAGCAGACCAGCGGAAATGTGAGCATCTCCTACTCTTTCTAAGGTGTGAGAATGACAGAAACATCCTTTGCAGCACGGCTGAGCCCCCCTCAGATTCAATATGTCTTGACTCCATACATGGAAGGCTGCTACAACATCGATCACCCCCTTACCGTACCCCCTCCGAATTTGTCTCTGATGTCTGGGTCCTTTTCGACACCATGTTGATGAACTCAAAGGACCAGGAGTTGGTTGTCAAGCTACGGGGCAGCTTTCAGAGGAAGTTAGGGGAAGTGTTTGGGACagctctccacccctccctcctcagCCACCCTAACAGCAGCTGGACTGAGACGGGGGAACCTGAGGAACCAACGGCTGCAGAGTCTCTGAAGAAGATGAGGGAGTTGCTGAATATGGCCAAAGTGCCAAAAGCTAAGAAACGTCACTCCCAGGTCAGAGTTGAAACAGATGAAAATGAAACTAAAATGAAGAAAATTAAAAAGGATGCAGACTGAAAAATTGCCATTTGAAGTGGAGATTCAGAAATGCTATGTTGTTAGTCAGTTATATACAACTGACATTgtactttttttaaattaaattaaatacaaaagGGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593181.2 False 3652 mRNA 0.51 15 21270516 21281833
XM_036971837.1 True 3462 mRNA 0.51 14 21270516 21281833

Neighbor

gene id symbol gene type direction distance location
LOC110513224 LOC106580132 coding upstream 712 21265418 ~ 21269804 (+)
dcst2 dcst2 coding upstream 7363 21240035 ~ 21263153 (+)
LOC118946533 NA coding upstream 101226 21166550 ~ 21169783 (+)
LOC110513109 muc1 coding upstream 106478 21157176 ~ 21164038 (+)
itga8 LOC106580029 coding upstream 179224 21026137 ~ 21091292 (+)
zgc:171704 LOC106580162 coding downstream 1664 21283497 ~ 21285741 (+)
LOC110513274 LOC106580182 coding downstream 75612 21357445 ~ 21360824 (+)
LOC110513285 LOC106580187 coding downstream 108584 21390417 ~ 21407197 (+)
LOC110513388 LOC106580236 coding downstream 191111 21472944 ~ 21483516 (+)
LOC110513414 gnrh-r coding downstream 211326 21493159 ~ 21497274 (+)
G234317 NA non-coding upstream 9290 21260805 ~ 21261226 (+)
G234308 NA non-coding upstream 14579 21255668 ~ 21255937 (+)
G234299 NA non-coding upstream 22861 21247363 ~ 21247655 (+)
G234253 NA non-coding upstream 36657 21232173 ~ 21233859 (+)
G234344 NA non-coding downstream 11555 21293388 ~ 21293794 (+)
G234345 NA non-coding downstream 12198 21294031 ~ 21294393 (+)
G234353 NA non-coding downstream 22488 21304321 ~ 21304548 (+)
G234355 LOC106580174 non-coding downstream 27011 21308844 ~ 21312450 (+)
G234360 NA non-coding downstream 38388 21320221 ~ 21322885 (+)
G234322 dcst2 other upstream 6010 21264075 ~ 21264506 (+)
G233545 NA other upstream 661791 20608293 ~ 20608725 (+)
G233521 LOC106579937 other upstream 704804 20558776 ~ 20565712 (+)
LOC110512505 LOC106579702 other upstream 1425864 19821356 ~ 19844652 (+)
G231983 LOC106597055 other upstream 2036221 19226366 ~ 19234295 (+)
G234340 LOC106580151 other downstream 4893 21286726 ~ 21287002 (+)
kiaa0319 LOC106580477 other downstream 735761 22017579 ~ 22037490 (+)
LOC110503910 LOC106580557 other downstream 776709 22057484 ~ 22068080 (+)
G235426 LOC106581355 other downstream 1022660 22303641 ~ 22304906 (+)
LOC110514034 NA other downstream 1178707 22460524 ~ 22472917 (+)

Expression


Co-expression Network