zgc:171704 (LOC106580162)


Basic Information

Item Value
gene id zgc:171704
gene name LOC106580162
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21283497 ~ 21285741 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593188.2
TCACTGTACAGTAGCCTATATCAAAACAGGGTAATTAAAATAGCTTTTTGAAGCATAATCCATTCCAAATGGTTGTCCAAGTCAAACCCAGCTCGCATCACTGCAGCAAGACAATTGAGGGAACTCAGCAAAAAGTGGAAGCTAATATCTTATTACTTGGGGCTGAAAATGTAGGGAAATCAGCGCTCACCGTCCGATTTATTACCAGAAGATTTATTGGCGAGTACGGTGAAATAGAATCAATTTACAGTCATATTGACACAGTTGACGGGAGGGAAATATCCTTCAACATATGGGACTCGCTCTACCCACAGGACAGTGCAATAACTGAGTCGATAAGTGAGAAACAGCTTCAATGGGCAGACGGTGTGATACTGGTATACAGCATATGCGACCGCTCCAGCTTCGAGGTAGTGCGTCAACAAGTGCAGCGCATCCGCCACGCCAGTAGGAAGATGTCTGCAACAGCGCCCATCATCATTGTTGGAAATAAACGCGATTTGCAGCACCGACGGACAGTCTCAAGTGAGGAGGGCCGACTCCTTGCTCTCTCGGAAGACTGCGTATTTTTTGAGATATCCGCAGCTGAAACATACCACGGTGTTTTGCTGGTGTTCCATGGACTGATAGATCTTATCAAAGAGTCGAGAGCTCTGCGGAAAGGTGCCGCGGGTATTAAAAGTATAGTGAGAAGCATGTCAGCTGTATTCGGGAAGAAACGTGCAGAGTAATCTACCACAGGATAGGCTACATTATGCGCAATGGGATTTGGATGGTCAGAACATGTAGGTATGCTACGCGGTTGGCCAATGCAGGCTTGGAGGcgcaattgagaaaaatggtctaTGGCAGGTTGTAGTGCAACAGCAGGCGCGTTCTAACAACTTCAACAGGTTTTGATAGGGAACTTAATTTGGACGTTTTTTAGAGAGGAGAAATTGGTTCTCTTTGTAGAGTTACACAAAAGTTTGAATTGCAGAtggaagcaatcaatcaatcatttatTCTACTTTTTGAAGTTGAAAAGTaggtatacagtactgtagataaACTGTATAAGAAATCATGTGCGCTTCCATACTTCACTCAATAGGTGTTCAATGGGAAGCATGAGCAGGAATCTGAAGTAGCTGACATCTGACAATACTGTTGATCTGATGGAAGGCCTACCCATTGCCAATTGTTAGGGAATTTATTTTCAGTGACAATGTACACTCAAAGTTTGTAAAATGTTGAAGGCTTGATGTGTGTATAATCAGCAATGCAAAACAATTACATTTCAGTATTATACTTTATCTAAAAACGAACAACTTTAAACTTAGTAATTCTATGTTGCAAGTTCTAGCAGACTTGATGCTTATGTGCTGTGCACACCTTTGTTTGagaattgtaaataaataaattaacataTTGAAATGTGGATAAAACTATTTCATTTCTGTGTAATACATCTTGGGGAAAAGTTATATGTGGTAATTTTAATGTTTATACAATGCATGAAACCGGAATGGGTTAATCTTGGAAAGTACTTGTATGAGctgagtactgtactgtagatggggAAATGGCACTTTATTTCACTCTTCATAACCTCAATACATTTCACATCAGCAATACAAATGTTATTTATTTCTTGAATACAACCAATGTTATGTTTATGTATTCTGTAGGACAATCTAAACGTGTCATGTATTACATGTTCTGAAATATTAAATGTTATGACATtgtaataaatacattttctacTGTC

Function

NR:

description
ras-related and estrogen-regulated growth inhibitor-like protein

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593188.2 True 1750 mRNA 0.39 4 21283497 21285741

Neighbor

gene id symbol gene type direction distance location
trim33l LOC106580136 coding upstream 1664 21270516 ~ 21281833 (+)
LOC110513224 LOC106580132 coding upstream 13693 21265418 ~ 21269804 (+)
dcst2 dcst2 coding upstream 20344 21240035 ~ 21263153 (+)
LOC118946533 NA coding upstream 114207 21166550 ~ 21169783 (+)
LOC110513109 muc1 coding upstream 119459 21157176 ~ 21164038 (+)
LOC110513274 LOC106580182 coding downstream 71704 21357445 ~ 21360824 (+)
LOC110513285 LOC106580187 coding downstream 104676 21390417 ~ 21407197 (+)
LOC110513388 LOC106580236 coding downstream 187203 21472944 ~ 21483516 (+)
LOC110513414 gnrh-r coding downstream 207418 21493159 ~ 21497274 (+)
LOC110513472 creb3l4 coding downstream 333984 21619725 ~ 21624474 (+)
G234317 NA non-coding upstream 22271 21260805 ~ 21261226 (+)
G234308 NA non-coding upstream 27560 21255668 ~ 21255937 (+)
G234299 NA non-coding upstream 35842 21247363 ~ 21247655 (+)
G234253 NA non-coding upstream 49638 21232173 ~ 21233859 (+)
G234344 NA non-coding downstream 7647 21293388 ~ 21293794 (+)
G234345 NA non-coding downstream 8290 21294031 ~ 21294393 (+)
G234353 NA non-coding downstream 18580 21304321 ~ 21304548 (+)
G234355 LOC106580174 non-coding downstream 23103 21308844 ~ 21312450 (+)
G234360 NA non-coding downstream 34480 21320221 ~ 21322885 (+)
G234322 dcst2 other upstream 18991 21264075 ~ 21264506 (+)
G233545 NA other upstream 674772 20608293 ~ 20608725 (+)
G233521 LOC106579937 other upstream 717785 20558776 ~ 20565712 (+)
LOC110512505 LOC106579702 other upstream 1438845 19821356 ~ 19844652 (+)
G231983 LOC106597055 other upstream 2049202 19226366 ~ 19234295 (+)
G234340 LOC106580151 other downstream 985 21286726 ~ 21287002 (+)
kiaa0319 LOC106580477 other downstream 731853 22017579 ~ 22037490 (+)
LOC110503910 LOC106580557 other downstream 772801 22057484 ~ 22068080 (+)
G235426 LOC106581355 other downstream 1018752 22303641 ~ 22304906 (+)
LOC110514034 NA other downstream 1174799 22460524 ~ 22472917 (+)

Expression


Co-expression Network