LOC110513266 (LOC106580174)


Basic Information

Item Value
gene id LOC110513266
gene name LOC106580174
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21308844 ~ 21320007 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593198.2
GAGCCCCACGCAGCATCCGAGATATAATAGCATCATTGAGTTTGGCGTATAGAGAGCGAATAGACCATACGAAAAGAGGAAGACAATCATTATTTATTAACCTGTGAGCTCATTTACTGGAATAGTTGGTTGAAGTATCGTTACTCATTCTCTATGGATATAAAATAGGGACAAATCAGCTTTATATTCTTTAATTTACCCTTTTTATCTGGGCTGCCAGTAAAGCATCCTGCGTTAATTCTCAAAATGGCTGAGATTACAGAATTACGACCTGCATATGACATGTCACCGGTGCTGGCTGGTTTTATCGGTGCAGCGGCTCTGGTGGTTGCCGTGGTGATCCTGGTTCTCCTGTGGTCCTTCTGCCAGCGTCGCAACCTCCGGGTGATGGGCCGGTACAAGCTCCATGGTGATCAGTACACCGACTCGGCTGAAGACCCGCCTTACAAGTTCATCCACATGCTGAAGGGCATCAGTATCTACCCAGAGTCCCTCAGCAGCAGCAAGAGGATAGTACGGGTGGCCAGACGTGCTGGgtggcagggggagagagacagagagaggggtggtggccGCGGGATGGTCCTGGTGGATGCTGAGAACAACATCCTGGATGCTCCTACCCATCTCCAGATGAGCCACCTGGTGCCCCCTGCTGGCCAGCCCAGAATGGAGGCGGCACTGCCCGTCAGGGCCGACTACTGCTGCCTGGATAGCTCAGCTACCAGTAGCGAAAACAGCAGCAAGACTGTTTCACCTTTCACCCCCGCGTCCTCTGACCCAGAATCAGAGCCTGAAACCAGCCTGGGCTCCCTCAGCCTGGCTTTAGACTACAACTTCCCTAAGAAGGCCTTGGTGGTGACCATCGTTGGAGCCCATGGCCTGCCTGCAGTAGACGAACAGAGGAACAGCTCCGACCCCTACGTGAAGATGACCATCCTCCCTGAGAAGAAGCACCGGGTGAAGACCAGGGTCCTGAGGAAGACACTGGAGCCGGTGTTTGACGAGACGTTCACGTTCTATGGAGTGGCCTACAGCTCGTTGCCCGAGCTCACGCTGCACTTCCTGGTGCTCAGCTTCGACCGCTTCGCCCGAGATGATGTCATAGGAGAGGTGGTGGTCCCGCTGACAGAGTTGGAACCCAGCACGGGGCGGGTGCACATCACCCAGCAAATCAGCAAGAGGAACATGCAGTGCGAGAGCCGTGGGGAGCTGTTGGTGTCTCTGTCCTACCAGCCTGTCTCCCACCGCCTCAGTGTGGTGGTGCTGAAGGCCAAACACCTGCCCAAGATGGACATCTCTGGCCTGTCTGGAAACCCATATGTGAAGGTCAATGTGTTCTACGGACGCAAGCGCATCGCCAAGAAAAAGACGCACGTGAAGAAGTGCACGTTAAACCCCGTCTTCAACGAGTCCTTCATCTACGACGTGCCCCCCGAGCTGCTCCCTGAGATCTCCGTGGAGTTTGTGGTGGTCGACTTTGACCGTACCACTAAGAACGAGGTGGTGGGGCGCCTGCCCCTCGGCCTGCACAGCCCCTGTCCCTCTGGCGCCGCCCACTGGCGGGAAGTCTGCGAAAACCCCCGTCGGCAGATCTCAAAGTGGCACAACCTCAGTGAATACTAGCTCCTCACACCACCTAATGCATATAGTTCTACCTGTGtatagggggaggtggaggaggggaagagagggactTCTTGCCGAGAGAGTGGCTTTTCCCCATGCCATACATTCTCTTGTGAATAATACCAACAAAAAATGAACAACATTCCTGGTGGGACTTGTACAGTGGACTTTACAGTGGTTAAGGTTCAACTACAGGATCGAATTAAAGTAACAAACATGCATACAGATaaacatacatatatataaccCACACCACTACAGAATTATAGAGACACTCAGTCTCAGCATTTGGGTACGAGTAATGAAAATAAAAAAGTTTGTTAACCAAAGTCTGACCAGGATCACACATTCAAGGCTGTTATTATTGTCTGGCCATGTTGTATGAAGTTTAGGCGATGGGAGGATACATGCAAATGCTTAAAAAATAAAGAATTGTCAGACTTCAAAATCCTCCCCTTGCCAATATTGTACTTCATTCATCGCATGTCTGAATTAAACAGAaatatcatcaaatcaaatgtaggAAGGAAACAGAAGTATTGCTTATATTGATAGTGagaatttttttctctctctaaagGTAGCAACGAATAGGACAGCTAGAAAATTCTACCCATGAAATGTTTTGGGGCCTAACTGTTGTCGTTCAGTGGCATTACCATATTTGATGACAAGCTCTGTATCTAACATGAAAACCATCAAGGTTTCAAACCAATTGATTCTTTGTTGTTAAGACAAATGTGATTTCACtgcaaatatatttattttgggTTCATTTTTAGAACAAATTCGGTCTGAAAATATGAATGTAATAAACAACCAAAACATTATTACATGGATACATGTagcgtttcgctacactcgcattaacatctgctaaccatgtgtatgtcacaaatataatttgatttgatttgatttaacatgtGATCACAAGAAATATGACATCTTCTCATACTGTGGCATTGAAAAAGCATTTACCACAGTATAAGCAAATTACTGAACTATCACTGCAGCAGGTTAGTCTTAGTACTGTAATAACCAGGTAATAACACATGCTAGTTAGGAGCTTGTAGTGCCAGATGTTTTTTGAAAGTCACTGATATTATTGTGAATAATGGTTTTGACATGAAGAGTTGTAAAGGGTCATGTTTTGCTGTGTGGTTTCCAAAAGGTTTATACAGAATATTCCAGATATATTTTGGCCTTTGCTGCCATGCTCATCTTTTAGGACTCGATTCAATCCGAATCACCGAAGTTCTGCGCTATAGCGTGCTTGAAATGTAAACGTAATTTTTTATTGAGCTgtcatatgcagcgtttaccgtgaatgcagtcttcGCGAACTTGGGAACATTGGCTttacattgcctttacatttcaatagCGCTGAACTTGAGCGATACGGATTAAATCGAGCCCTTTGTGTATTTTTGTCTCTTTCATTTGGCTAATTTCAAGATTATATTGTATAAAAGAACAGTACTTTATATCTTGAAGGCAACACTTTTCTATAGTGAATAGCCTCACAGGTTGAAgctcctgtatgtgtgtgtgtgtggagactgCAGAGCCCAGGTGCACTGTTTAGAATAATATAAGTGGTGATGGGGTTCAGAGCAGGACATGGCAGTGGGGTGGCTACTGCTAACTTCTGGCTTGGCTAGGCTTTATGACCAGAAGGACGAGACACAGGTGGGCAAACCCCCACACCTCTACTATCAccaacctctccatcctctcttcctcctctttttctcccgctctctcactctctctgacccTCCTTCGCACTTtctttctagctctctctttACAGTCCCTTATTTCCTCAATCTCCTTCGTTCTcccgtctcctctctctaactctttctTTGCACCTTCTTTATTTGGATCACTAATATCTCAAATTCCTTTTAATGCTTCATTCCTCATAATGAGAGAAGTCACAGTATTTGACATATTAGTGAACCCATCATAACACCTATCACACCCTGTGAGGATTTGGCTGTATGACTGATGCTCTGTCATCATTGTACATCGTaggtcaggggtgtcaaactcattccatggagggcctagtgtctgcaggttttttggtttttcctttcaatgaAGCCCTAGACAACAATTagtggggagttccttactaattagggaccataattcatcaatcaagtacaagggaggacttgcagacactcggccctccgtggaatgagtttgacacctgtgctGTAGGCCTACTCAGTGGAGACATGGGGAGTCTAGCTGCAATGGCTTTACATCACACTGTGTAACATTTACTGCAGTGCAGTCTGGCAAATTGACTGTGTGAAACTCTGGGAGAACAGTAATCTCAGTGAAGCCAAGGTGAAAATACTTAAGTAAGACTGCAGGTTTGTGTCTTGACAGGGCAAGGGGAAAGCATAAAATTGTGTTGCAATACATATGAGCTGCCTTGTTTGCTTTTGGCAGCAAACTCCTGCGATCAGAACCCCCACCATTTTGACTGTCTAtagccccgtttatacctggtgctaacatgggTCCTTAGTCCTGATCTTGtctacattctgattgtgcccacatttccaGAAGTGTGTCTACACATGGTATTAAAATGAGTCTGTTATCTGTCCACTGTGTCTGCATTGTGACCAGAGTTCCTGGTCCCTTCCTTTATGCAAATCATGTCACAGCTataatatttgtatatatatttactgtaagacacatattgatgtaATCAGCCTCCTGTCACTGATTTTAGAGGCCGGaataatgatgatttaaatggtttttctGTCCAGATCTGTCTACACTTGTAAGATGTCTAGACACAAAAAGATCACAATGagatcacaatgtgtcttttGATTGTCAacacctgtctaaaaatgtgggcacaatcagactgtggacaagatcaggacaaaagACGCAAGTTAGAACAAGGTATAAAAGGGGCTTACTTCACCTTGTCTCCCCACCTTCGACCTTCAGTGTAGCTACTTCCTTTGTTGAAATATCCTTGTTAACTAATTTGGAATAAAATATGAAACGTAATGTAAACAAACTGTAATAATGACTGATCGTGGACTGGTACAAATGATTATTTCAAGGTATCTTCTATCCAAATACATGGAGTTAAACTATGTAATGAAATACTTGCCAGTAATGCAAACGGTGTCTAAAACGTACATTTTCCTATGTGCTGAGTATATTACGCGGATGCTaacttgtgtgttttttttcattaACAGTCATTCAACGTGCAAATAAAAAGTTATACTCCA

Function

NR:

description
synaptotagmin-11-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K19911 SYT11; synaptotagmin-11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593198.2 True 4928 mRNA 0.45 4 21308844 21320007

Neighbor

gene id symbol gene type direction distance location
dcst1 dcst1 coding downstream 69054 21230669 ~ 21239790 (-)
LOC110513176 LOC106605439 coding downstream 78778 21198765 ~ 21230066 (-)
LOC110513123 LOC106580095 coding downstream 136364 21168140 ~ 21172480 (-)
LOC110513075 NA coding downstream 156488 21135542 ~ 21152356 (-)
LOC110513063 thbs3 coding downstream 174949 21112222 ~ 21133895 (-)
LOC110503878 LOC106605446 coding upstream 185 21320192 ~ 21331512 (-)
LOC110513307 polr3gl coding upstream 55817 21375824 ~ 21388805 (-)
LOC118946634 NA coding upstream 96204 21416211 ~ 21420278 (-)
LOC110513321 LOC106580205 coding upstream 118539 21438546 ~ 21455972 (-)
LOC110503879 LOC106605450 coding upstream 137823 21457830 ~ 21469227 (-)
G234387 NA non-coding downstream 2521 21306088 ~ 21306323 (-)
G234378 NA non-coding downstream 15768 21292875 ~ 21293076 (-)
G234332 NA non-coding downstream 38698 21269851 ~ 21270146 (-)
G234313 NA non-coding downstream 49644 21258906 ~ 21259200 (-)
G234396 NA non-coding upstream 15529 21335536 ~ 21335999 (-)
G234397 NA non-coding upstream 16315 21336322 ~ 21336583 (-)
G234398 NA non-coding upstream 16695 21336702 ~ 21337160 (-)
G234399 NA non-coding upstream 17289 21337296 ~ 21337816 (-)
G234224 LOC106605437 other downstream 128162 21178597 ~ 21180682 (-)
glipr2l LOC106605424 other downstream 657148 20648378 ~ 20652052 (-)
G233513 LOC106561082 other downstream 756847 20551783 ~ 20551997 (-)
G233052 LOC106605397 other downstream 1552226 19756204 ~ 19757908 (-)
G232980 NA other downstream 1660215 19648086 ~ 19648629 (-)
G234600 NA other upstream 149654 21469661 ~ 21469945 (-)
G234621 NA other upstream 178401 21498408 ~ 21498832 (-)
G235092 LOC100194668 other upstream 418838 21738845 ~ 21743411 (-)
LOC118946878 NA other upstream 424444 21744425 ~ 21755710 (-)

Expression


Co-expression Network