LOC110513274 (LOC106580182)


Basic Information

Item Value
gene id LOC110513274
gene name LOC106580182
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21357445 ~ 21360824 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593203.2
TATAAAACCAAAGCGGAGACTTGCTGTTTACAGTCAGCTCCCAATTGTACGGTTGATGACAATAAGTAGCTAACATTGTGACAGTATAGTTATTTGAATAGCAATCAAGACGTTGGACATTTGTTCATCCGTGGAATTCGATAGGCTTAACTAGCTAATAATAGTGGTCGGCTATTTTCCACTTATATTTTCTTACTCACTGGCACACTAAACGAATATTAAAATGGTAATCATTACAAAGAAATTGAAAATATTTGAGATCGTTTTCCATGATCCTACTAAGGCTTTCTACTCCAGTGGTGACAAGGTAGCCGGGAATATTGTGGTTGAGGTGTCGGAGGTGACCAAGGTGTCCTCTATGAGAGTGTTTGGAATTGGATGCGCAAAAGTAGAGTACGCGAAAGGAAAGCACAGATGCCGTGAAGACATTGACTATCTGAAATACGAAGATACCGTTTATCTGGACCAACAGACTAGAGATTCCAATGGCTTGGTAACACTCAGACCAGGGAACAGATATGAGTACATGTTTGGCTTTGAGCTGCCACATGCTGGGCAACTGGTGTCGTCTTACAAGGGGAAGTTTGGCTGTGTCCAGTATTATGTCAGGGCAGTGATGGAGAGGCCTTCCCAGCCTGCCTTGCAGTGCGAGAAACACTTTGAGGTGGAGGAGCCCTTGGACGTCAACACCCCTGACCTCCTGGCTCCAGCTGCAGGTACGAAGGAGAAGAAGCTCACCTGCATGTTCATCCCAGATGGACATGTGTACATCAGTGCCAAGATCAACCGCAAGGGCTTCTGCGAGGGCGAGGACATCTGCATCAATGCCAAGTTTGAAAACACCTGCTCACGCATCGTGGTGCCCAAGGCAGCCATCATGGTCAAGCACACCTACCAGGCCAATGGCCGGACCAAGGTCCTAGGGCAGAAGCTGTCAGTCGTGAGGGGCAACCATATCATCTCGGGCATGTGTGACATGTGGCAGGGCAAGACCATCCGAGTGCCCAGGCTCAAGCCTTCACTCCTGGGGTGCGACATCATTCACGTGGACTATGCCCTTAGGATCTATGTCCACGTTCCCGGCAGTGACAAGGTGGTCCTAGAGTTGCCCCTGGTCATTGGGAACATCCCCTTCAATGGCTTTAGCAGCCGCACCAACAGCATGAGCAGTCAGGCAGAGTCCCTGAACACCCCCTCCAGTAGCTTTGGGTCACTGCGCCTCCCGTCACAACCCCCCAGCTACAGTAACATCTCCCGCGACTGCCGTATCGACTCCCCCCTCACACCGCTGCTGGTCGACTATGACGCAGATGAGGAGGAAGGACTGTTCATGCGCGCCCCCGAGCTTTGGtaccctcctccccctgcctACTCCGAGGTCGACAAGGATCTCAATCAGCAAGGGCCATGTTCTTCAGGTCTGCTGAACCACGAGTAAGAGTTGCAATGAATCCCCATTGTAGTCTAAGCATTGTCAGGGAACGGACTGGTGACTGGTTAAAGAGCAGCACTGCTGTGAAGCAGAAAGAGTGGGGGACCCTAGCTCTGAAGATTCTTTCAAGAAACAGAACTGAGATGTGGACTTGAGAGTCAAGTTTAAGTGAAATTATTCAGGCTGAATGAATATGGATTGTAGATGTTGGTGTCCACGGTCACTATCGCCATTGCAGTCTTCAGAAACTGATTGTTCCTATGTCTGTCTGTAACCCTCTTGCCATTCCACGGTAGTTCTGTACTTCAGTGTGTTCGAGCATTTTGACAGTTGCCATATTCTCTCAGAGAAATGAAACAATGTTAGAATTCACATCCATACATTGAGTGTGCACAGCTATCATTTTAGGTCAGACAGATACGATGCTGTGACCATGCAAAAGtaataaagggatagaaagtgtTTTAATGTTACATTCTATTCCACTTTATATTAATATAAATGGCTCTGTAATTAGATAATGAAAAATGACATATTTTTGTATTCATAATAGTCTTCCAGATTATACTAGGTCATTTTACATGAATTTTAACTCAGTGGTTTATGGTAGAAGAGAGTGACTTCATGGTAACGACCATTCTTGTCGAATGGGAATGA

Function

NR:

description
thioredoxin-interacting protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593203.2 True 2089 mRNA 0.47 6 21357445 21360824

Neighbor

gene id symbol gene type direction distance location
zgc:171704 LOC106580162 coding upstream 71704 21283497 ~ 21285741 (+)
trim33l LOC106580136 coding upstream 75612 21270516 ~ 21281833 (+)
LOC110513224 LOC106580132 coding upstream 87641 21265418 ~ 21269804 (+)
dcst2 dcst2 coding upstream 94292 21240035 ~ 21263153 (+)
LOC118946533 NA coding upstream 188155 21166550 ~ 21169783 (+)
LOC110513285 LOC106580187 coding downstream 29593 21390417 ~ 21407197 (+)
LOC110513388 LOC106580236 coding downstream 112120 21472944 ~ 21483516 (+)
LOC110513414 gnrh-r coding downstream 132335 21493159 ~ 21497274 (+)
LOC110513472 creb3l4 coding downstream 258901 21619725 ~ 21624474 (+)
LOC110513504 LOC106580325 coding downstream 271516 21632340 ~ 21643258 (+)
G234400 NA non-coding upstream 18920 21338320 ~ 21338525 (+)
G234369 NA non-coding upstream 20320 21336679 ~ 21337125 (+)
G234370 NA non-coding upstream 20806 21336346 ~ 21336639 (+)
G234362 NA non-coding upstream 33014 21324201 ~ 21324431 (+)
G234361 NA non-coding upstream 34127 21323018 ~ 21323318 (+)
G234420 NA non-coding downstream 1481 21362305 ~ 21362594 (+)
G234422 NA non-coding downstream 2569 21363393 ~ 21363737 (+)
G234439 NA non-coding downstream 27169 21387993 ~ 21388289 (+)
G234463 NA non-coding downstream 66234 21427058 ~ 21427330 (+)
G234468 NA non-coding downstream 74469 21435293 ~ 21440035 (+)
G234340 LOC106580151 other upstream 70443 21286726 ~ 21287002 (+)
G234322 dcst2 other upstream 92939 21264075 ~ 21264506 (+)
G233545 NA other upstream 748720 20608293 ~ 20608725 (+)
G233521 LOC106579937 other upstream 791733 20558776 ~ 20565712 (+)
LOC110512505 LOC106579702 other upstream 1512793 19821356 ~ 19844652 (+)
kiaa0319 LOC106580477 other downstream 656770 22017579 ~ 22037490 (+)
LOC110503910 LOC106580557 other downstream 697718 22057484 ~ 22068080 (+)
G235426 LOC106581355 other downstream 943669 22303641 ~ 22304906 (+)
LOC110514034 NA other downstream 1099716 22460524 ~ 22472917 (+)
G235571 NA other downstream 1311912 22672736 ~ 22698834 (+)

Expression


Co-expression Network