LOC110513307 (polr3gl)



Basic Information


Item Value
gene id LOC110513307
gene name polr3gl
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21375824 ~ 21388805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>LOC110513307
GACCCCAAGTCGCCGGAGTTCTGTAAGATGTAAACAACGTAGTGTTTGGTAAACTATAACGTCGCCCGCGGATTTGTAAACCAGCTAGCTTGAtcatgtttttatattttattttatacttGAAGATTAGTAGCTAGCTATGGCTCAGAAGGTGGGAGGTCATGAATaagttgatatggttagttagtaAGCACGTTGTCTGGGTGAACGATATTTTGTCATGATAAATCTGACAGCTCTAGCTAACGTCGTTATCTAGCTAGTGTAACGTTAGGCGCTAGTCGTTTTCTAGCAAGTTCTTACTAGCTACAGCTGTCATGTAGCTACTGTGCAAGCAAGTTAATATCACTGACGTCACTAGAAGATGGAACAAGTCTTTGTAAGCCGCACACAACTAGATAGGTAACTTGCTGGTAgctgttaaaggggcaatctgcgattcaaacaacaacaaagcggAGTCCCCGCCATCCAGAGATGTTTAATTGTCACATGtgcagggttgcaggtgtgattgcaggCTACAGTGAAAATCTTAGGCTCTGAGCTCCAACATACAGgaaagtgaaataaaacaataacattgaaattaaaaaacaaaaatattaatAGAAATATATAGCTGACTAGTGCTGAAATAGCAGGTAGCTGACTAGtagtggctattcagcagcctgaggGTAGAAACTATTGGCCAGTCATCCAGTTCTTgccatgatgctcctgtactgcccGAGTCTGAGTGATTGAAGCAAGGAGAACATGGCGTGGCTACGGGGTCCCTGATGATCTTGGCCTTCCTGCAACATCTGGCGTTGATTTGATTTACCTGTGAACCCCCCCACTGTGTGCTCACTCCATGGCTGGTCTGGGCCACGGCCAAGGTCGCGGCAAGGGGTACATGAGCTTCAGTATCGAGGCAGTTGGGATTGGGAAAGGGGAGAACCTGCCCCCTTCAATTCTCCAGCCTACACCTCTGTTCCCTCCCGTGGAACACAAGCCTGTCCCTTTGGTGATGGGAGAGGAAGCAGAGTACATGTTGGCACTGAAGCAGAGTAGATGTTGGCACTGAAGCAGGAGTTCAGGGGAAACATGAAGAACCTACCATTTTATGTCCGTCCAGCTGTCTCCAAGACAGATGTGGAGCGGTATTCTGATAAATATCAGAACAGTGAGCCGTCTGACAACACCATTGAGTGGAATCCAGACAGGAAAAGGCTACCAAAATAGCTTTGAATTCGTGTCAAGAAGGCCCTAAAAGAGAGACTTACAACTGTGGACCCCAAACCCAGAAAAAAGACCCGGGTGGACAAAGAGGAGATCATCCATAAACTAGAGACATTAGAGGAGGAAGTGACCTCAGAtgaagaggaaggggagaagaAGAAGCAGGAGGAAGGGCAGCAAGATGGGGAGGAGGAATATGATGAAGAAGAGTTTGAAGAGGAGACCGACTATATCATGTCGTACTTTGACAATGGAGAGGAGTTTGGAGGGGACAGTGATGACAACATGGATGAGGCCGTTTACTGATACTTTGAAAAACAACAACGACAGAGAATTGAGCATGCCCAGGACCCAAGAGTCCTGGGAAAATATATGTGACACTCCAGAACTGAGAGACACTCCAAAGCTGAGAGAATGTGCTGTTGTTCTTAGGTCCATCTTGTATACATGGCCTGAAATGATCTGAACTCGACACATGAATCTTCAAAATAACCCAGGATTCAGTCAGTTCCTGGCTTAAAAAATAATTTCAGCAGAAGAAGCAGGTTGCACAGTTCAAACCTGCAATAGTTTTAAATGGCTCTTaagtgtggtggtgttgtggagAGAGAAGTACGTCATTCTTCATAAGCAGACATCTTTTCTCCGTTTCACCAATTATTGTATAATTTCTTAGGTTTTTATCCAATTATAGAAATGTTAAAGAACTTTGAAGATATAAAAGGAAGGTGTTTAACACCAATTTTAATGTTATGTTGTTTTATGTAGTTTATATGTAGTTTTAAAAAGTTGTGCTTTGTAAAACTTTTATATCCATGTAAAATCCCAATGTTGTTTGTTATGAAAGTGGATTTTACTTCACTTGAAATTCTGAAAGAATAAATGGCAGCTAATTTGTAAACCAGGCAGTATTATTTTCTATGCTGCACAAACTGTTTTCCAACTAGAAGCTGTACTGGTTCACCAAA
>TU268103
TAGTGTTTGGTAAACTATAACGTCGCCCGCGGATTTGTAAACCAGCTAGCTTGAtcatgtttttatattttattttatacttGAAGATTAGTAGCTAGCTATGGCTCAGAAGGTGGGAGGTCATGAATaagttgatatggttagttagtaAGCACGTTGTCTGGGTGAACGATATTTTGTCATGATAAATCTGACAGCTCTAGCTAACGTCGTTATCTAGCTAGTGTAACGTTAGGCGCTAGTCGTTTTCTAGCAAGTTCTTACTAGCTACAGCTGTCATGTAGCTACTGTGCAAGCAAGTTAATATCACTGACGTCACTAGAAGATGGAACAAGTCTTTGTAAGCCGCACACAACTAGATAGGTAACTTGCTGGTAgctgttaaaggggcaatctgcgattcaaacaacaacaaagcggAGTCCCCGCCATCCAGAGATGTTTAATTGTCACATGtgcagggttgcaggtgtgattgcaggCTACAGTGAAAATCTTAGGCTCTGAGCTCCAACATACAGgaaagtgaaataaaacaataacattgaaattaaaaaacaaaaatattaatAGAAATATATAGCTGACTAGTGCTGAAATAGCAGGTAGCTGACTAGtagtggctattcagcagcctgaggGTAGAAACTATTGGCCAGTCATCCAGTTCTTgccatgatgctcctgtactgcccGAGTCTGAGTGATTGAAGCAAGGAGAACATGGCGTGGCTACGGGGTCCCTGATGATCTTGGCCTTCCTGCAACATCTGGCGTTGATTTGATTTACCTGTGAACCCCCCCACTGTGTGCTCACTCCATGGCTGGTCTGGGCCACGGCCAAGGTCGCGGCAAGGGGTACATGAGCTTCAGTATCGAGGCAGTTGGGATTGGGAAAGGGGAGAACCTGCCCCCTTCAATTCTCCAGCCTACACCTCTGTTCCCTCCCGTGGAACACAAGCCTGTCCCTTTGGTGATGGGAGAGGAAGCAGAGTACATGTTGGCACTGAAGCAGAGTAGATGTTGGCACTGAAGCAGGAGTTCAGGGGAAACATGAAGAACCTACCATTTTATGTCCGTCCAGCTGTCTCCAAGACAGATGTGGAGCGGTATTCTGATAAATATCAGAACAGTGAGCCGTCTGACAACACCATTGAGTGGAATCCAGACAGGAAAAGGCTACCAAAATAGCTTTGAATTCGTGTCAAGAAGGCCCTAAAAGAGAACACCTCTCTTAGTGTGGAGACAACTGTGGACCCCAAACCCAGAAAAAAGACCCGGGTGGACAAAGAGGAGATCATCCATAAACTAGAGACATTAGAGGAGGAAGTGACCTCAGAtgaagaggaaggggagaagaAGAAGCAGGAGGAAGGGCAGCAAGATGGGGAGGAGGAATATGATGAAGAAGAGTTTGAAGAGGAGACCGACTATATCATGTCGTACTTTGACAATGGAGAGGAGTTTGGAGGGGACAGTGATGACAACATGGATGAGGCCGTTTACTGATACTTTGAAAAACAACAACGACAGAGAATTGAGCATGCCCAGGACCCAAGAGTCCTGGGAAAATATATGTGACACTCCAGAACTGAGAGACACTCCAAAGCTGAGAGAATGTGCTGTTGTTCTTAGGTCCATCTTGTATACATGGCCTGAAATGATCTGAACTCGACACATGAATCTTCAAAATAACCCAGGATTCAGTCAGTTCCTGGCTTAAAAAATAATTTCAGCAGAAGAAGCAGGTTGCACAGTTCAAACCTGCAATAGTTTTAAATGGCTCTTaagtgtggtggtgttgtggagAGAGAAGTACGTCATTCTTCATAAGCAGACATCTTTTCTCCGTTTCACCAATTATTGTATAATTTCTTAGGTTTTTATCCAATTATAGAAATGTTAAAGAACTTTGAAGATATAAAAGGAAGGTGTTTAACACCAATTTTAATGTTATGTTGTTTTATGTAGTTTATATGTAGTTTTAAAAAGTTGTGCTTTGTAAAACTTTTATATCCATGTAAAATCCCAATGTTGTTTGTTATGAAAGTGGATTTTACTTCACTTGAAATTCTGAAAGAATAAATGGCAGCTAATTTGTAAACCAGGCAGTATTATTTTCTATGCTGCACAAACTGTTTTCCAACTAGAAGCTGTACTGGTTCACC

Function


symbol description
polr3gl Predicted to enable chromatin binding activity. Involved in transcription by RNA polymerase III. Located in nucleus. Part of RNA polymerase III complex.

NR:

description
DNA-directed RNA polymerase III subunit RPC7-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
LOC110513307 False 2195 mRNA 0.43 9 21375824 21388805
TU268103 True 2168 lncRNA 0.49 8 21375827 21388766
Loading

Neighbor


gene id symbol gene type direction distance location
LOC110503878 LOC106605446 coding downstream 44312 21320192 ~ 21331512 (-)
LOC110513266 LOC106580174 coding downstream 55817 21308844 ~ 21320007 (-)
dcst1 dcst1 coding downstream 136034 21230669 ~ 21239790 (-)
LOC110513176 LOC106605439 coding downstream 145758 21198765 ~ 21230066 (-)
LOC110513123 LOC106580095 coding downstream 203344 21168140 ~ 21172480 (-)
LOC118946634 NA coding upstream 27406 21416211 ~ 21420278 (-)
LOC110513321 LOC106580205 coding upstream 49741 21438546 ~ 21455972 (-)
LOC110503879 LOC106605450 coding upstream 69025 21457830 ~ 21469227 (-)
LOC110503882 LOC106580249 coding upstream 125733 21514538 ~ 21539187 (-)
LOC110513430 LOC106580258 coding upstream 162613 21551418 ~ 21587320 (-)
G234550 NA non-coding downstream 1066 21374036 ~ 21374758 (-)
G234540 NA non-coding downstream 11691 21363846 ~ 21364133 (-)
G234405 NA non-coding downstream 25711 21349864 ~ 21350113 (-)
G234401 NA non-coding downstream 36877 21338742 ~ 21338947 (-)
G234399 NA non-coding downstream 38008 21337296 ~ 21337816 (-)
G234581 NA non-coding upstream 39304 21428109 ~ 21428374 (-)
G234584 NA non-coding upstream 42163 21430968 ~ 21431181 (-)
G234586 NA non-coding upstream 44183 21432988 ~ 21433289 (-)
G234601 NA non-coding upstream 82561 21471366 ~ 21472544 (-)
G234610 NA non-coding upstream 95579 21484384 ~ 21484597 (-)
G234224 LOC106605437 other downstream 195142 21178597 ~ 21180682 (-)
glipr2l LOC106605424 other downstream 724128 20648378 ~ 20652052 (-)
G233513 LOC106561082 other downstream 823827 20551783 ~ 20551997 (-)
G233052 LOC106605397 other downstream 1619206 19756204 ~ 19757908 (-)
G232980 NA other downstream 1727195 19648086 ~ 19648629 (-)
G234600 NA other upstream 80856 21469661 ~ 21469945 (-)
G234621 NA other upstream 109603 21498408 ~ 21498832 (-)
G235092 LOC100194668 other upstream 350040 21738845 ~ 21743411 (-)
LOC118946878 NA other upstream 355646 21744425 ~ 21755710 (-)

Expression


LOC110513307(polr3gl) Expression in all Baseline Samples

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LOC110513307(polr3gl) Expression in each Bioproject

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LOC110513307(polr3gl) Expression in each Sample
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Co-expression Network