LOC110513285 (LOC106580187)


Basic Information

Item Value
gene id LOC110513285
gene name LOC106580187
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21390417 ~ 21407197 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593210.2
ctctccctctctcgtgtTTCTTTACCTGTCTGTCAAGCGCAGGGATCATCATAGCGCATCGTTTGGGCGCAACATATCCACAGCGTTCCTATTCACTCCCACCACGCGACCCACTCCCCACCCCTGCTGCGACGCTCCGCGTCTTCTAAACTAGTGGTCGCGGGAGAGATacaggggaagagggggagggggagagaggctcGACGTTAACACAATATCTGGGGGATATTACAGAGACTAAAGTCTGGCTTTTATATCAGAAAAAACATATGCTAAATGGATCTGAATTAAACGCGTTTCATCCATGTTCTAGGAAGGTTGGCGTCCGGCAGAACGACtgaatcagcaccatggacagcgaccGTAGTTTGGAAAGGATTTAAGTTCACCAGCTCCCTCTTCAGGATGGCCAGTCAGCGCGAAGCTAAGTAGTCGGTGTAGCAGGCTTGACTGGAGGAAGAGGTGCCAGAGGCACTATGGGAGATGGAGGAGCCCTCCATACGGAGGGGAACGCCCTTCTCAAAGCCGTCTTCCAGGGCAAGCTGCGACTGACCCGGCTCCTCCTGGAAGGGGGAGCCTACATCAACGAAGGCAACGAGCGGGGTGAGACCCCCATCTCTGCTGCCTGCTTGGCTGGCTACGAGGACCCCCAGAGCCGCCAGAGGATGGTGCGCTACCTCCTGGAGAAAGGAGCCGATCCCAACATCCCAGACAAGTCTGGGCGGACCGCCCTGATGCATGCCTGTGTCGAGCAGGCGGGCAAAGAGGTGGTGTCCCTGCTCCTAGAGAATGGAGCTGACCCCAGCCTCAAGGACTACACAGGCTCCTCCGCCCTGGTCCATGCCATCAACAGAGGTGACCGAGACACCCTCCAGGTCCTGCTGGACGCCTGTAAGGCAAAGGGCAAGGAGGTGATCATCATCACCACCGACACGTCACCCTCGGGCACCAAGAAGACCAAGCAGTACCTCAACTCCCCCCCATCACCAGGGGTGGTGGACACGCTCTCGCCCATGGCCTGCATGTCGCCCTCAGAGGTGGCAATCCAGACCTCCAATTCCCCAGCAGCAGAGAAGGCTGAGGAGGAGGACAGTATCTTCAGCTTTGCGTTGACATCAGCTTTACCCCTACCCTCCAATAGAACCCTAGGGGAGAAAAGGCCGCCCCCCCGCAAACTCCTGAAGAGGCTCAACTCGGAGCCTTGGGGGCTGGTAGCACCCTCAGTGCTCAGCAGGGTCCCACAGGAGGAGGTTGATGGTGGACTGGAGGAGGAAGGTGGGGGTAGGATCATCACTGAGATGAATGGTCTGTCAATCTCGGGTCCTGGCAGGCCTCTCCTGTCTCGTCGGCACAGCATCGAAACACACGACCCCTGCTCACCCAAACTCATTGACCGATCCTGCTCAGAGGACTGTGCAGCGCTTTGTAGCTCCTCCTGGGCCGACAAGGTCCAACAGCACCAGATCCTGTACCGCAGGAACACCGCGCCTGAGTCTCAGGAAAATACAGGCGGACCAGGGGCGGTGGCTTTACGCGCCCTGGCTCACCCCAAACTTACCCGTATGGAGCACTATGAGTCAGACACACACCTGTGTCCTGAGTCCATCCCTGGATCTCCAGACTCAGGGCGCGTGTCGGTGGAGCGGAGGAAGTACAACGCctcgcccctctctctgctcACCACCTCCTCCCGGGAGTCCCTTGAGAGCATCCCCAattctgtctctcccatcaccatGCGCAGACGGCCCCCCGGCCTCCTAGAGCGCAGAGGCTCAGGCACCCTCCTCTTGGACCACATCTCCCACACCCGCCCCGGGTTCTTGCCCCCACTCAATGTCAACCCCCACCGGCCCATCCCAGACATCCGGGCCAATGGCAAGCCCACTTCCCCCATCCACTCTGGTCCCAAGATCCTGGTTCCAGTTGCCCCTGCCTCACCCAAGAGAGGCCCAGACTTCAAGATGAAGAAGAAACTGATGAGGAGGCACTCCATGCAGACGGAACAGATGAAGCAGCTCTCCACTTTCCAGGAGATCCTGACAGAGAAGGTCATTGAGTCCAACGGGGACTGAGACTTAAAAGGACATGTGAGGGCAAGTTGGGGGGTACAATGGTGGATCTATCTAGTTAGTCCACCATTTTCCTCAACCAGTGCTTAAACCAGGACTACTAACATGAATTTGGCTCATTCAGAGTGAGGCCTCAGTCCCATCTTTGTTCTGTGTCAAGTGCAgatagttatttttatttttaggtGACCTATTTTATTTAGTTGTGTTTCCTTTCTGTGCTGTCACAGAAAGCTGGTTGATTGAGTAATACGGTTTACAGAAGATGTTCTTCTCATTTCTCCTCAAATTATTTATTAATATACCCATTTACAGTCAACAGAAATAGAAACATATTTCTGTGTTTTTAGATGTTTACACACTGCAAAATGTGTACCAATGTCTTGCCTAGTGTTCCGTGTGCTGAAGACATTTTCATCCCCTCTGAAATCAGTCACCTTATCTATCTATGACACTTTAGGTCGAAAGAACAGATCATCAATAGAGATGCTAGCAACAGCTTACCTTGAATTGTTATTCTGAATGTGCTGTCTTCCCGATTTTCAATTATTGCATTAGCTGTTTTAAAACATCAAACTTCAACCCTAAAATACTCTTATGTTGATGGGTATGTTTTGGGGAGAATGATGCTGCATTCCATGAAATAGTTTTCAAGACATATTGCCTGAAGATTTCACTGTCATTGTATTGTTGCTGTTATCTACTTTCACTGTATTTATTTGCCTTCACCTTTTCATCCCCTGATATTTTGTGTTTTAGAGAGCAATTTTGGCTATATGGTCGAACCACACGCCTGACTTACCCTGACGACTACAGTGGGATCAACATGTGGGACCCTTTATGAGTATCACACtgtaataatgttttttttttaagtcaattGAATGGCAATTTCATACAAAATTCCAAAGAAATCCCATGAATGCATGTTTGTTTACATTGGAGTGTGTGAATACTGTAAGATGGCTTTTAGAATAATTAACCTCAAATAATTGCACATTGGTGATATGCGTTTCCATATGGAAAGAGCTCCTAGCACATATTAACTGTAAATAATGTAAAGATAAGACAAACCTAATTTGGTTATGAAATATGTCCATGTGCAATATGCTGTACTGTAATGTCAATGGATTTCCTTCATCTATGGTGGATGTGAAGTTGTCTTTACAAATTTACATTGAAAGCAATCTGAAGCCCTTCTTAACATTTACTGTACACAGTTTTGCCAAAAGGGAGAGTGTGAGGCTCACAGAACTAACATTTACAGTTACTTACACATTTAGATTGTCACTTTTAAATAATTCAATTTGTATAGGGTGAGATTTAAGAGAAAAAAGTTTGAAAATGTTTCCCAAGCTTACAATGTGACTGCTTGTCCCGCTTCCATTGGAAATATTTGTCTTTAATGAAATAATGTTTATATGCTACAAGGTTTAGTATTGACCTCCTGTTGATTGAACTGTATGTTGGTTACTTGAAGTTTAAGAGAAATACAAACAAAAAATGCATATTTTTGTATGCCTGTTAGGAAATAGAAAAGTAAATTCTAATATGTAATCTATTTTCACGTTTGAACTTGATTGTAATTTGATTGTGGAATAAATATTTGTTAAATGTTCATAAGTTAATTAAAACAACCTTTAGTTGTCATGTCT
>XM_021593215.2
ctctccctctctcgtgtTTCTTTACCTGTCTGTCAAGCGCAGGGATCATCATAGCGCATCGTTTGGGCGCAACATATCCACAGCGTTCCTATTCACTCCCACCACGCGACCCACTCCCCACCCCTGCTGCGACGCTCCGCGTCTTCTAAACTAGTGGTCGCGGGAGAGATacaggggaagagggggagggggagagaggctcGACGTTAACACAATATCTGGGGGATATTACAGAGACTAAAGTCTGGCTTTTATATCAGAAAAAACATATGCTAAATGGATCTGAATTAAACGCGTTTCATCCATGGTTCACCAGCTCCCTCTTCAGGATGGCCAGTCAGCGCGAAGCTAAGTAGTCGGTGTAGCAGGCTTGACTGGAGGAAGAGGTGCCAGAGGCACTATGGGAGATGGAGGAGCCCTCCATACGGAGGGGAACGCCCTTCTCAAAGCCGTCTTCCAGGGCAAGCTGCGACTGACCCGGCTCCTCCTGGAAGGGGGAGCCTACATCAACGAAGGCAACGAGCGGGGTGAGACCCCCATCTCTGCTGCCTGCTTGGCTGGCTACGAGGACCCCCAGAGCCGCCAGAGGATGGTGCGCTACCTCCTGGAGAAAGGAGCCGATCCCAACATCCCAGACAAGTCTGGGCGGACCGCCCTGATGCATGCCTGTGTCGAGCAGGCGGGCAAAGAGGTGGTGTCCCTGCTCCTAGAGAATGGAGCTGACCCCAGCCTCAAGGACTACACAGGCTCCTCCGCCCTGGTCCATGCCATCAACAGAGGTGACCGAGACACCCTCCAGGTCCTGCTGGACGCCTGTAAGGCAAAGGGCAAGGAGGTGATCATCATCACCACCGACACGTCACCCTCGGGCACCAAGAAGACCAAGCAGTACCTCAACTCCCCCCCATCACCAGGGGTGGTGGACACGCTCTCGCCCATGGCCTGCATGTCGCCCTCAGAGGTGGCAATCCAGACCTCCAATTCCCCAGCAGCAGAGAAGGCTGAGGAGGAGGACAGTATCTTCAGCTTTGCGTTGACATCAGCTTTACCCCTACCCTCCAATAGAACCCTAGGGGAGAAAAGGCCGCCCCCCCGCAAACTCCTGAAGAGGCTCAACTCGGAGCCTTGGGGGCTGGTAGCACCCTCAGTGCTCAGCAGGGTCCCACAGGAGGAGGTTGATGGTGGACTGGAGGAGGAAGGTGGGGGTAGGATCATCACTGAGATGAATGGTCTGTCAATCTCGGGTCCTGGCAGGCCTCTCCTGTCTCGTCGGCACAGCATCGAAACACACGACCCCTGCTCACCCAAACTCATTGACCGATCCTGCTCAGAGGACTGTGCAGCGCTTTGTAGCTCCTCCTGGGCCGACAAGGTCCAACAGCACCAGATCCTGTACCGCAGGAACACCGCGCCTGAGTCTCAGGAAAATACAGGCGGACCAGGGGCGGTGGCTTTACGCGCCCTGGCTCACCCCAAACTTACCCGTATGGAGCACTATGAGTCAGACACACACCTGTGTCCTGAGTCCATCCCTGGATCTCCAGACTCAGGGCGCGTGTCGGTGGAGCGGAGGAAGTACAACGCctcgcccctctctctgctcACCACCTCCTCCCGGGAGTCCCTTGAGAGCATCCCCAattctgtctctcccatcaccatGCGCAGACGGCCCCCCGGCCTCCTAGAGCGCAGAGGCTCAGGCACCCTCCTCTTGGACCACATCTCCCACACCCGCCCCGGGTTCTTGCCCCCACTCAATGTCAACCCCCACCGGCCCATCCCAGACATCCGGGCCAATGGCAAGCCCACTTCCCCCATCCACTCTGGTCCCAAGATCCTGGTTCCAGTTGCCCCTGCCTCACCCAAGAGAGGCCCAGACTTCAAGATGAAGAAGAAACTGATGAGGAGGCACTCCATGCAGACGGAACAGATGAAGCAGCTCTCCACTTTCCAGGAGATCCTGACAGAGAAGGTCATTGAGTCCAACGGGGACTGAGACTTAAAAGGACATGTGAGGGCAAGTTGGGGGGTACAATGGTGGATCTATCTAGTTAGTCCACCATTTTCCTCAACCAGTGCTTAAACCAGGACTACTAACATGAATTTGGCTCATTCAGAGTGAGGCCTCAGTCCCATCTTTGTTCTGTGTCAAGTGCAgatagttatttttatttttaggtGACCTATTTTATTTAGTTGTGTTTCCTTTCTGTGCTGTCACAGAAAGCTGGTTGATTGAGTAATACGGTTTACAGAAGATGTTCTTCTCATTTCTCCTCAAATTATTTATTAATATACCCATTTACAGTCAACAGAAATAGAAACATATTTCTGTGTTTTTAGATGTTTACACACTGCAAAATGTGTACCAATGTCTTGCCTAGTGTTCCGTGTGCTGAAGACATTTTCATCCCCTCTGAAATCAGTCACCTTATCTATCTATGACACTTTAGGTCGAAAGAACAGATCATCAATAGAGATGCTAGCAACAGCTTACCTTGAATTGTTATTCTGAATGTGCTGTCTTCCCGATTTTCAATTATTGCATTAGCTGTTTTAAAACATCAAACTTCAACCCTAAAATACTCTTATGTTGATGGGTATGTTTTGGGGAGAATGATGCTGCATTCCATGAAATAGTTTTCAAGACATATTGCCTGAAGATTTCACTGTCATTGTATTGTTGCTGTTATCTACTTTCACTGTATTTATTTGCCTTCACCTTTTCATCCCCTGATATTTTGTGTTTTAGAGAGCAATTTTGGCTATATGGTCGAACCACACGCCTGACTTACCCTGACGACTACAGTGGGATCAACATGTGGGACCCTTTATGAGTATCACACtgtaataatgttttttttttaagtcaattGAATGGCAATTTCATACAAAATTCCAAAGAAATCCCATGAATGCATGTTTGTTTACATTGGAGTGTGTGAATACTGTAAGATGGCTTTTAGAATAATTAACCTCAAATAATTGCACATTGGTGATATGCGTTTCCATATGGAAAGAGCTCCTAGCACATATTAACTGTAAATAATGTAAAGATAAGACAAACCTAATTTGGTTATGAAATATGTCCATGTGCAATATGCTGTACTGTAATGTCAATGGATTTCCTTCATCTATGGTGGATGTGAAGTTGTCTTTACAAATTTACATTGAAAGCAATCTGAAGCCCTTCTTAACATTTACTGTACACAGTTTTGCCAAAAGGGAGAGTGTGAGGCTCACAGAACTAACATTTACAGTTACTTACACATTTAGATTGTCACTTTTAAATAATTCAATTTGTATAGGGTGAGATTTAAGAGAAAAAAGTTTGAAAATGTTTCCCAAGCTTACAATGTGACTGCTTGTCCCGCTTCCATTGGAAATATTTGTCTTTAATGAAATAATGTTTATATGCTACAAGGTTTAGTATTGACCTCCTGTTGATTGAACTGTATGTTGGTTACTTGAAGTTTAAGAGAAATACAAACAAAAAATGCATATTTTTGTATGCCTGTTAGGAAATAGAAAAGTAAATTCTAATATGTAATCTATTTTCACGTTTGAACTTGATTGTAATTTGATTGTGGAATAAATATTTGTTAAATGTTCATAAGTTAATTAAAACAACCTTTAGTTGTCATGTCT

Function

NR:

description
ankyrin repeat domain-containing protein 34A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593210.2 False 3727 mRNA 0.48 3 21390417 21407197
XM_021593215.2 True 3651 mRNA 0.48 2 21390417 21407197

Neighbor

gene id symbol gene type direction distance location
LOC110513274 LOC106580182 coding upstream 29593 21357445 ~ 21360824 (+)
zgc:171704 LOC106580162 coding upstream 104676 21283497 ~ 21285741 (+)
trim33l LOC106580136 coding upstream 108584 21270516 ~ 21281833 (+)
LOC110513224 LOC106580132 coding upstream 120613 21265418 ~ 21269804 (+)
dcst2 dcst2 coding upstream 127264 21240035 ~ 21263153 (+)
LOC110513388 LOC106580236 coding downstream 65747 21472944 ~ 21483516 (+)
LOC110513414 gnrh-r coding downstream 85962 21493159 ~ 21497274 (+)
LOC110513472 creb3l4 coding downstream 212528 21619725 ~ 21624474 (+)
LOC110513504 LOC106580325 coding downstream 225143 21632340 ~ 21643258 (+)
LOC100136306 LOC106580330 coding downstream 242244 21649441 ~ 21713248 (+)
G234439 NA non-coding upstream 2128 21387993 ~ 21388289 (+)
G234422 NA non-coding upstream 26680 21363393 ~ 21363737 (+)
G234420 NA non-coding upstream 27823 21362305 ~ 21362594 (+)
G234400 NA non-coding upstream 51892 21338320 ~ 21338525 (+)
G234369 NA non-coding upstream 53292 21336679 ~ 21337125 (+)
G234463 NA non-coding downstream 19861 21427058 ~ 21427330 (+)
G234468 NA non-coding downstream 28096 21435293 ~ 21440035 (+)
G234480 NA non-coding downstream 50639 21457836 ~ 21459196 (+)
G234491 NA non-coding downstream 62666 21469863 ~ 21470188 (+)
G234340 LOC106580151 other upstream 103415 21286726 ~ 21287002 (+)
G234322 dcst2 other upstream 125911 21264075 ~ 21264506 (+)
G233545 NA other upstream 781692 20608293 ~ 20608725 (+)
G233521 LOC106579937 other upstream 824705 20558776 ~ 20565712 (+)
LOC110512505 LOC106579702 other upstream 1545765 19821356 ~ 19844652 (+)
kiaa0319 LOC106580477 other downstream 610397 22017579 ~ 22037490 (+)
LOC110503910 LOC106580557 other downstream 651345 22057484 ~ 22068080 (+)
G235426 LOC106581355 other downstream 897296 22303641 ~ 22304906 (+)
LOC110514034 NA other downstream 1053343 22460524 ~ 22472917 (+)
G235571 NA other downstream 1265539 22672736 ~ 22698834 (+)

Expression


Co-expression Network