LOC118946634


Basic Information

Item Value
gene id LOC118946634
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21416211 ~ 21420278 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041504.1
GTTTCCAATCTGTTGTGGACATCCATTGAAATGCAGTACATCTGGCGCAATGTAACAGAGTGCTTATGGGTAATGAAAACTTGAGGGGCTTTAGGGTTGTCAGACAATTTTTGGGCCAAACCTAGCTCAAATTCTACACGTTGGAGTAAAACGAGGCTACAGCGTCCATAAGGTAACCATTAAGCCTCGTTCACATTACCCATAAGCACTCCATTACGCTGTGCTGGATGTCATGCATTTCAATGGGGACGTCCACAACGGAGTGGAATTACATCGCCCCACTTGCGGTTGAAGGCACCGTTGCGACATAATTTGACATTTTCCAAACTTTGCCTTGTCTTCagtccagccagagtccggaAGTTACCAAACCACAGAACAAGATGAAAATGTGTGGTTTTCATTGATGGATGATGGCTGCAATCCACTCCCAGTTAAGCGGGGTCCGGTCAGGCCACCTTCAGCTCCAAAATGCCCTGGGGGATGTGATGGACATCCAGAACTTTCTTTCTGGTAGAAGTCAGCAATGACTGGAGGCAAAACATTAACACCATTGAGAACCTGAAGTATGTAAAATATGCTGGGACGCAACATCAGCGgtggctcctcagaggaggaaaACAATACTGCTTGGTGACCTACAGATTATATTTGGAGATGGTTATCGGTGTGGAGAAGCTAGGCACAGAACACTGAATTCCCTGAAAACATTTCCGGCGCCTacttcagtccaagtcaagcactggtctAACTGAATGTGGATGTTGTGTTGGCTGAATGTTCCAGGCACACTCCAGAATGTTCTTCTGCTGGTGAACCTTGTCTTGTGTTGTGCAATGGCAGCTGGTCTGGCAGAAGTTCATGAGCTCCATGACCATAGACTCATAGATTTCGGCTCTGGCCAGCCCCATGCAGTCTTTTCCTCTTCCGAGTCATGATGTTGAGCTTGAGTTTTTTCCCGGATTAAAGATTTCATCCAATGGGTCTACAGGATCTGTACTTCTAAAGCAGCAGCACCAGGATTAGTCTGTAGGACATACACTAGTCAGTGATTAGGCAACATtttactactttgtccccatGAATACACACTCTGACAAGGTACTACATCCACTCTTCACCCTTGTGTTAAAGATCATGCATACTAACCTTCACACACAATACCTACTCCCAacaaaaatcaa
>XR_005041510.1
GCGTTGTGTTTCCAATCTGTTGTGGACATCCATTGAAATGCAGTACATCTGGCGCAATGTAACAGAGTGCTTATGGGTAATGAAAACTTGAGGGGCTTTAGGGTTGTCAGACAATTTTTGGGCCAAACCTAGCTCAAATTCTACACGTTGGAGTAAAACGAGGCTACAGCGTCCATAAGGTAACCATTAAGCCTCGTTCACATTACCCATAAGCACTCCATTACGCTGTGCTGGATGTCATGCATTTCAATGGGGACGTCCACAACGGAGTGGAATTACATCGCCCCACTTGCGGTTGAAGGCACCGTTGCGACATAATTTGACATTTTCCAAACTTTGCCTTGTCTTCagtccagccagagtccggaAGTTACCAAACCACAGAACAAGATGAAAATGTGTGGTTTTCATTGATGGATGATGGCTGCAATCCACTCCCAGTTAAGCGGGGTCCGGTCAGGCCACCTTCAGCTCCAAAATGCCCTGGGGGATGTGATGGACATCCAGAACTTTCTTTCTGGTAGAAGTCAGCAATGACTGGAGGCAAAACATTAACACCATTGAGAACCTGAAGTATGTAAAATATGCTGGGACGCAACATCAGCGgtggctcctcagaggaggaaaTGCCTGAGTTGGTGGCAGGACACTCCATTAATGATAGAGCAAGCCGAGCTGTTGAAGGGCCACCACAAGCTGATGAACCTGGAGTGCTCATGGAATTACTTAATACAATACTGCTTGGTGACCTACAGATTATATTTGGAGATGGTTATCGGTGTGGAGAAGCTAGGCACAGAACACTGAATTCCCTGAAAACATTTCCGGCGCCTacttcagtccaagtcaagcactggtctAACTGAATGTGGATGTTGTGTTGGCTGAATGTTCCAGGCACACTCCAGAATGTTCTTCTGCTGGTGAACCTTGTCTTGTGTTGTGCAATGGCAGCTGGTCTGGCAGAAGTTCATGAGCTCCATGACCATAGACTCATAGATTTCGGCTCTGGCCAGCCCCATGCAGTCTTTTCCTCTTCCGAGTCATGATGTTGAGCTTGAGTTTTTTCCCGGATTAAAGATTTCATCCAATGGGTCTACAGGATCTGTACTTCTAAAGCAGCAGCACCAGGATTAGTCTGTAGGACATACACTAGTCAGTGATTAGGCAACATtttactactttgtccccatGAATACACACTCTGACAAGGTACTACATCCACTCTTCACCCTTGTGTTAAAGATCATGCATACTAACCTTCACACACAATACCTACTCCCAacaaaaatcaa
>XR_005041498.1
TGTTTCCAATCTGTTGTGGACATCCATTGAAATGCAGTACATCTGGCGCAATGTAACAGAGTGCTTATGGGTAATGAAAACTTGAGGGGCTTTAGGGTTGTCAGACAATTTTTGGGCCAAACCTAGCTCAAATTCTACACGTTGGAGTAAAACGAGGCTACAGCGTCCATAAGGTAACCATTAAGCCTCGTTCACATTACCCATAAGCACTCCATTACGCTGTGCTGGATGTCATGCATTTCAATGGGGACGTCCACAACGGAGTGGAATTACATCGCCCCACTTGCGGTTGAAGGCACCGTTGCGACATAATTTGACATTTTCCAAACTTTGCCTTGTCTTCagtccagccagagtccggaAGTTACCAAACCACAGAACAAGATGAAAATGTGTGGTTTTCATTGATGGATGATGGCTGCAATCCACTCCCAGTTAAGCGGGGTCCGGTCAGGCCACCTTCAGCTCCAAAATGCCCTGGGGGATGTGATGGACATCCAGAACTTTCTTTCTGGTAGAAGTCAGCAATGACTGGAGGCAAAACATTAACACCATTGAGAACCTGAAGTATGTAAAATATGCTGGGACGCAACATCAGCGgtggctcctcagaggaggaaaTGCCTGAGTTGGTGGCAGGACACTCCATTAATGATAGAGCAAGCCGAGCTGTTGAAGGGCCACCACAAGCTGATGAACCTGGAGTGCTCATGGAATTACTTAATGTACGATCAGTACAGGATGGGCAGCAAGAACACACACAACATGAACCTCAATCCAACAAGATTGTGTCCCTCCACACCTGGGTCCTCAATTAAAGGGAAACTTCACTGCTAGCCACTATCTCCCTACATCATTTTAAGTGATGAGAGGGTGTTCCTGACATAATTATGCAGCATAGAGGTATTTTTGAATATTCGCAACGGTAGAGGTCAACCAATGACGTCATTGTTTGATtgagcctgctgtctgatcccaaaATTTACAGAGTCATGCTTTGTAGCAATTATTGTGGCCTTTGTGTTACGCCGATTGTACAATCACACTAGCAGTgagtagatatggttgtccttgttcAATAGAGCCATTGGCCTTGTCCCAACGATGTTCCTATCTGACACAACATTGCAGGATATCTAGGTTGACTCATGTTCTCTGGCTTTTTTTATGTTCTTTTACATACTAACATAGGGACATACTGCCCTATTAATTTGAGCCGGAATACAGTGAAGAGGAGTTGAGACAGCGAGGACAAGAATTGCGAGGCCAGCAAGCAGCGATGGGGAGCCACGGGCAGACTTTGACTAGTGGTGCCTATGTGGGTGCTGTCCAGCCACGCCGACAGAAGAGAAATGTCTGTGCTGCAACTAATTAGATTGTGGACGGTTCATACTGGAGATGGTCACTGCAGACCCCATGGATTGTGTGTCTGATACAGACCATCAAAGTTTTGACGCACATATGGATAGAAGTGTGCTGGAGACATTTTTCAGAACCTCCAAGATCAAATGGCGGCGGCAGCCTAGACCAGCGGGGTAGTACGTTGTTTTGCTgttggtagctactagctagctagtaataTAAGCTCTCTTTTCACATGAGGCAGTGTTGTTCAGTACAGTATAATTTTGTGATTGATTCGGCCATAACGGGGCTTGCTAGTACCACTACAAGTTGaactagctagctttgtttgctATACCCAAAATGTCCCGTAGCCTAATGTTATCGTTACCTAGCTATTGTAAGCTAGCTATCATAGCTAGCCTCAGTGCATCTTATTAGTAGCAAAAATGGATAAATGTTTTGATGATGATGACGAAGAGTAAAGAAATGACTTTGGCTTTATGACTCATATTGGTCtacctgtgtgtctgtgagatTTGTAATATTCTGCATCATGCTGCTACTGTAGGAATACAGACAGTACACAATGATTGGCCATTAAAGTCTAATAGCGTTTTGTCATT

Function

NR:

description
exocyst complex component 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041504.1 False 1184 mRNA 0.46 3 21416211 21420271
XR_005041510.1 False 1295 mRNA 0.46 4 21416211 21420278
XR_005041498.1 True 1970 mRNA 0.45 3 21416784 21420272

Neighbor

gene id symbol gene type direction distance location
LOC110513307 polr3gl coding downstream 27406 21375824 ~ 21388805 (-)
LOC110503878 LOC106605446 coding downstream 84699 21320192 ~ 21331512 (-)
LOC110513266 LOC106580174 coding downstream 96204 21308844 ~ 21320007 (-)
dcst1 dcst1 coding downstream 176421 21230669 ~ 21239790 (-)
LOC110513176 LOC106605439 coding downstream 186145 21198765 ~ 21230066 (-)
LOC110513321 LOC106580205 coding upstream 18268 21438546 ~ 21455972 (-)
LOC110503879 LOC106605450 coding upstream 37552 21457830 ~ 21469227 (-)
LOC110503882 LOC106580249 coding upstream 94260 21514538 ~ 21539187 (-)
LOC110513430 LOC106580258 coding upstream 131140 21551418 ~ 21587320 (-)
LOC110513449 LOC106580288 coding upstream 168663 21587450 ~ 21609130 (-)
G234550 NA non-coding downstream 41453 21374036 ~ 21374758 (-)
G234540 NA non-coding downstream 52078 21363846 ~ 21364133 (-)
G234405 NA non-coding downstream 66098 21349864 ~ 21350113 (-)
G234401 NA non-coding downstream 77264 21338742 ~ 21338947 (-)
G234581 NA non-coding upstream 7831 21428109 ~ 21428374 (-)
G234584 NA non-coding upstream 10690 21430968 ~ 21431181 (-)
G234586 NA non-coding upstream 12710 21432988 ~ 21433289 (-)
G234601 NA non-coding upstream 51088 21471366 ~ 21472544 (-)
G234610 NA non-coding upstream 64106 21484384 ~ 21484597 (-)
G234224 LOC106605437 other downstream 235529 21178597 ~ 21180682 (-)
glipr2l LOC106605424 other downstream 764515 20648378 ~ 20652052 (-)
G233513 LOC106561082 other downstream 864214 20551783 ~ 20551997 (-)
G233052 LOC106605397 other downstream 1659593 19756204 ~ 19757908 (-)
G232980 NA other downstream 1767582 19648086 ~ 19648629 (-)
G234600 NA other upstream 49383 21469661 ~ 21469945 (-)
G234621 NA other upstream 78130 21498408 ~ 21498832 (-)
G235092 LOC100194668 other upstream 318567 21738845 ~ 21743411 (-)
LOC118946878 NA other upstream 324173 21744425 ~ 21755710 (-)

Expression


Co-expression Network