LOC110503879 (LOC106605450)


Basic Information

Item Value
gene id LOC110503879
gene name LOC106605450
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21457830 ~ 21469227 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110503879
CAGAAACATGTGTCTGTACTGCAGTTGAGGCAGTAGGAGAGGAGGGAATGAtagtgtatttttttaaattactagAATAGAATGGAAACAGGATCAACCATTTAAGTGAAACACTATCCACATGCGGAAATCATATCGATAACTTGAGACCAGAAAATATAGCTAGCGTTTTGAGAGAATGTGCCAGTAATATGTCGTCTGGGAACAAGTCAAAGAAATGGGAGATTCGGGCACACAAACCGGGTTCAGGGGGCTATGAGCGGTTGACAGCTGAGGAGATGGATGAACAACGCATCCAGAAGGTTGCCTATCAATACCTGTGCCGTTTGGAAGAGGCTAAAAGGTGGATGGAAGCTTGTCTCCATGAGGAGCTGCCTGCCCCGACTGAGCAGGAGGAAGGGCTGAGGAACGGGGTGCTGCTGGCCAAGCTAGGCCACTGTTTCACCCCCAAGATACTCCCCCTCAAAAAGATCTATGACCTGGACCAGGAACGCTTCAAGGGTATGGGATTGCAGTTCCGCCACATGGACAACATCAACCATTGGCGCAGTGCGATGGCGGAGATCGGACTGCCAACTATGTTCCACCCAGAGACGACTGACATCTATGATAAGAAGAACATCCCCAGAACTGTGTACTGTATCTGTGCTCTCAGCCTCTACCTTTTCCGACTATGTTTGGCCCCTCAGATCCATGACCTCTGTGGCAAGGTCAAATCTACAGGGGaaaatataatattaatattccTCTCTCATTCCTGTGTTTTTGGGGTAATATTTATTCTCCAGAGGAGATATGGCATCCAGATGCCAGCCTTTAGCAAGATTAGGGGAATCTTAGCCAATGAGATAAGTGGATGAGGCTGCTAtccatGCTGCAGTTATAGCGATCAACGAGGCGGTGGAGAGGGGGCACGTGGAGGTCATTGCCCAGGCCCTGCGGAACCCCAGCGCCATGCTCACCAACCTGCAGGAGCACCTGATGCCAGTCTACCAGGAGATGGCACGGGCACAGAAGGCAGCTTTCGCCTACACCAAGtgtaactgttcagaggagaaggATATCTATGAGGAACACCTGACCCAAAGTGAGATTCAAGAGAACATTGACAAAGTAAATGTGCGTGCGGCCATAGAGCAGGTGGACGAGGCCCTGGATTGTGGGGACTCTGGCCATCCTGGCAGCCCTCCAGGTCCCCTGTCTGGCCCTGAGGGGCCTCCAGAGAGGCCATGGTACCTGGAGCAACTGGCCACTGACCGTGAACAGAATGCCCTGGACCTGggctgtgtggaccctctggagCGAGATGAGCTGCAGAAGGAGGTGTTGTGGCTAACGAGGAGGCCCAGAGCAACCAGACAATGCAGAAAGCTGTAAGATCTATCAACGAGAACCTGCGTCTTGGGGAGCCCAGGCAGACTGTTCGTGCCCTCATGGACCCTGAGGGCATCTCACTCAACTCCTTTTCTCTGCAACTTTACTGTAGTGAATATGGTCCTCTGTGCCTGCAGGGGGACCTGCAGCAGGAGGAGCTGTACGTAGCAGTGGAGATACTCTCGGCGGTGGCTCTTATCAACTAGGCAGTGGAGGCCAAAGATGTGGGAGCCTTCTGTGCCACGCTGGTCAGCCCTGCAGCCGGTCTGGCCGATATTGACGACAGCTTGGTCCAGAGGTACTTTGAGGAGCTGGGTGATCAGAGGAGGAAGGCTGTGAGAGCTCTGCTGACGTGGAACAATCTCCAGAGAGGACCGAACTCTGTAAACGCAGCAGCACAGGAAGAGCATGACCAGATCCTCGCCATCTGGCTGATTAACCAGGCCCTGTCTCGAGGCGACCTTCAGAAGGCTCTAGCTGCACTGCTGCTGCCTTCTAGTGGCCTTGAGGAGGTGACGACACTCAATGCTCGCCGCTACCATGACGTACTGACCAGAGGCCGGAGGTTGAAGGCTGAGGTGAGCCGTAATCCAGGAGCAGAGTTGTGGTTGGCTGACATTCAGAAAGGAGTGAGAAGAGCCAATCACGACACTCAAAGAGCCCCGAAGATGTCCCTGGGCTTGGTGGCCGTGAACCAGGCAGTGGAGGAGGGCAAGACGTCCCAGACGCTGCGAGTCCTGCGTCTGCCAGAGGTGGCGCTGCGGAGCGTGGTGGAAGAATGTGCTGGAGTGTACCAGGCTGAAATCACCACCCTACTCTTGGGCCAAATCTGTGGGAGGTCAGTACCCACTACCACTCAGCCTCTGTACCTGGCCCAGCTGATCTTCCTGAAGCCCCAGAATAAAACGACTCTCTTCATGGAGACTGTCATCTTCACCCTGTTCAACTACGGCTCCGACTGCAGGGAGGCCTACCTGCTGCTGCAGCTCTTCACCCCCGCGCTGTGCCATGAGATCAAGTCATTGTACACACACTATTCACACACTATACAGGTGGTGACTGGGAACCCCACAGTCATTAAGATGTTTGTGAGTTTCTACCGCCATGCCCGCGGTCAGACCGCGTTGAAGGAGATCCTCGGGCTGGCCATTAGAGAGGTGCTGCAGGACTGCATCCTCAGCATCCGCACGGACCCCTGCGAGATCGACAAGAGCTGGGtcaaccagacccagaccaaCCACAAGAGcTCCCTGCCCTATGAAGTGAGTGCAGAGCAGCGTCGCCTGTACATCTCTATCGTCAACCTCAAGAACGTTACAGACCGCCTGCTCAACGCAATCACCAGCAACCTGCATAAATTACCATATGGGATGCGCTACACAGCCTAGGTCCTGAGAGATTCTCTACATGAGAAGTTTCCTCAGGCCAGCGAGGATGAGCTTTACAAGATTGTGGGGATCCTGGTGTACTACCGCTACAACCCAGCTGCTGTGGCTCCGGATGGTTTTGATGTGGTAGAGTTCTCGTCTGGCTCCTCACTGCTCCCTGAGCAGCGTTGCATCCTGGGTTCCATCGCACGCATCCTGCAGCATGCCGCCTCACACAAACACTTCCACGGTGACAGCCCTCACCTGCGCGCCCTCAACGACTACATTACCCTGACGCACTCCAAGTTCCGTAAGTTCCTTCATGCTGCGTGTGATGTGTCGGCGCCAGAGGAGCATTTTAACATTGAATACTCTGAGATGGTCATCCTCAACAAGCCTGTCATCTATATCTCCATCAGTGAGCTCCTTAACACACACAAGcttctGATGGAGCACCAGGACTCCCTGTGTCCCGACCAGTCTGACCCATTGCTGACTGTTGACCTGGGGAAGGTGCCCACTATCCAAGCTCTGGTTGGTGAGGGGGCTGTGAGCGCTGCGGAGCCCCAGAAAGAGCAGACCCTGGCCCAGTACAGTAAGATGGAGATGTCCCTCAACCTCACCAGCAAGTTTGATGTTTTCAGGGGCTCTGACGACCACCCTGACGCCAGGGGGATTCTCCTCAGTACCAAACAGTTTATCGTCGACTTGATCCGAGCCCAGCCTGGAGAGCTTCTTCCTCTCAGGATCAGgaAGTGCAGCACGCGTGGATGATGCACTGCCGTGCCCAAAGGGACGCCCGCACCCCTGAGAAGATGAAGAGGAACCAGTTGATCGTTTCCGACGGCAACCTGTCTCTGGAGGAGAAGAAGCAGAAGATCCAGCGTAGCCTGAGGAGGCTGGAGAGCCTGGGGGTCCTGACCCCACCTGACTCTGAGACACAGATACTACAGCTCATAGCCAAGGTAGATGGAAACATACactacacagcacacacacaatgacatttTAATTGTAAAGTTATCACACCAAATCAACTACAGATaaacctctcccccccccccccgagacaGACCATTGGCAGCCTGCACTGCAAGACCTCCTTCCACAGCTAACAGGTGGACTTCTACAGCAAGTACATCACCACCTGCCTGGGTAACCTCACCGCCAAACACAGTGAGGTGAGTGGAAAGAAGGCAGCAGAGAGCAAAGGGAAGAAGAGCAAGCATCCCACTCTGACCTACACTGTTACCCGTTTACATGAGAAAGGATTCCTTGTGGAGATCGAGAACCTGCCAGTCACACAGTTTAAGAATGTCATCTTTGACATTGTGCCCGGTGATGAGGGTGGCACGTTCCAGGCTCGCTTTATGGGTGTGGACATGGAGAAGTTCCCCCTCAAATACCAGGACCTGCTGCAGCTCCAGTACGAGGGAGTGGCGGTGATGAAGATGTTCGACAAGGCCAAAGTCAACGTCAACCTGCTAATCTTCCTTCTCAACAATAAGTTCTTCAAGAAGTGAGGGGGTTAGGATAGTGCCAGATCTCCCACCCCAACACGGGGAGCAGCCTACACAGTCCTCTAGTATTTTGTGCACTACTTAAAATGAGCACAGGACCGCCGCTAAGCTACATTTGCCACACGCTCCACATACATATGCTCTTAGGGGATTTTATGTTGTGCAACTTAATGATTCAAATGCCACTTTCAATGCCATAGGAACTGGTACTGTAACATGTACCTTGAGACTTCCTGTGATTATGCTTTATTGTCTCCCTGATGTGTAGGTTACTGACAGGTCTGGCCACATTGTAAGGAATTTGTGTAATTGACTGTAAAGACAGATGATATTGCAATGAGGGTGATTCCATTAGCTAGGCTTATGTCAGATGAGATGTGGTTGAGCCTTGTGGTCCAACCTTTGAACTCTAACCTAAGAGGCTTGACCTTTTTGTTAGTCTGGGCTTAACTTTTGTTCAAACTTACGTACATATTTTCTGTCATTTAATTGTTTATCTTCATATTTTCATCTGTCATTCTGATACCCTTATGTCAGTCTTGATTAGTTTAATATTTTTCTTTTCAACACTAACATGTTCAGGCCAGTCAAAATTTCCACAATCGGCTGCTAAATATGAATGTGGACCAACATGACAATACAACTGTTGTTATTTCTTTACATATCAGTGCTGTAGCTGTAAAGGAAATTGGTTGATTAATCTAACCAGACAACAGACCAACTGCCTGATAAATTGTCCTAATGAAACTGTTAATACTTCTGTTTTTTTACTTTtatatttaaataaaaatgtagttTCTGTCA

Function

NR:

description
ras GTPase-activating-like protein IQGAP3

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110503879 True 5065 mRNA 0.51 27 21457830 21469227

Neighbor

gene id symbol gene type direction distance location
LOC110513321 LOC106580205 coding downstream 1858 21438546 ~ 21455972 (-)
LOC118946634 NA coding downstream 37552 21416211 ~ 21420278 (-)
LOC110513307 polr3gl coding downstream 69025 21375824 ~ 21388805 (-)
LOC110503878 LOC106605446 coding downstream 126318 21320192 ~ 21331512 (-)
LOC110513266 LOC106580174 coding downstream 137823 21308844 ~ 21320007 (-)
LOC110503882 LOC106580249 coding upstream 45311 21514538 ~ 21539187 (-)
LOC110513430 LOC106580258 coding upstream 82191 21551418 ~ 21587320 (-)
LOC110513449 LOC106580288 coding upstream 119714 21587450 ~ 21609130 (-)
LOC110513497 NA coding upstream 142927 21612154 ~ 21619661 (-)
LOC118944502 LOC106580547 coding upstream 247626 21716853 ~ 21718331 (-)
G234586 NA non-coding downstream 24541 21432988 ~ 21433289 (-)
G234584 NA non-coding downstream 26649 21430968 ~ 21431181 (-)
G234581 NA non-coding downstream 29456 21428109 ~ 21428374 (-)
G234550 NA non-coding downstream 83072 21374036 ~ 21374758 (-)
G234601 NA non-coding upstream 2139 21471366 ~ 21472544 (-)
G234610 NA non-coding upstream 15157 21484384 ~ 21484597 (-)
G234613 NA non-coding upstream 18866 21488093 ~ 21488380 (-)
G234617 gnrh-r non-coding upstream 23997 21493224 ~ 21493785 (-)
G234619 gnrh-r non-coding upstream 27603 21496830 ~ 21497139 (-)
G234224 LOC106605437 other downstream 277148 21178597 ~ 21180682 (-)
glipr2l LOC106605424 other downstream 806134 20648378 ~ 20652052 (-)
G233513 LOC106561082 other downstream 905833 20551783 ~ 20551997 (-)
G233052 LOC106605397 other downstream 1701212 19756204 ~ 19757908 (-)
G234600 NA other upstream 434 21469661 ~ 21469945 (-)
G234621 NA other upstream 29181 21498408 ~ 21498832 (-)
G235092 LOC100194668 other upstream 269618 21738845 ~ 21743411 (-)
LOC118946878 NA other upstream 275224 21744425 ~ 21755710 (-)
G235881 NA other upstream 1104606 22573833 ~ 22574989 (-)

Expression


Co-expression Network