LOC110513388 (LOC106580236)


Basic Information

Item Value
gene id LOC110513388
gene name LOC106580236
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21472944 ~ 21483516 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593253.2
CAGACCTGCTACTTCATAGCTTTCCCTGGCTCCACAAACCAGTAACTccctaacattagctagttagcaagCTAACAAGAAAAGCCAGCTAAAACGTGTGATATAGACTAACTAGGGATTACGGCTGTACGGATAATTTACCTAGGTATTTGTTAAGCTAACTAACTAATTGCGACTGCTCTGTTTTGGATGGCTGTTCATCTTGAAAATTCTCCTCATAATGCTATCCTATAGCCACCCCCTGGCGAAATCAATATGGCATCTGATAGCTACCCATCACATGAAGGCAGGAAGAAGAAGAGTGACGAATGTGTAAAGAGCAAAGACAAAGAGGCTGATGTCCTGAAGGTCCAGGTGGACATAGAGGAGCTCACAGCCTCTGGCCACATTGCCCTAAAGCAAGGGGACTGTGAAGAAGCCCTCCGCTGTTTCAAAAAGGCCTTCAAAGCTTCCATAGAGTTAAAGGAGACCAGGGTCCAGCAGGCATGTGCCTTTAACCTGGGAGCTGCCTACGTGGAGGTGGGTAAAGCCCTGAAGGGGCTGGACTTCCTGAAGCGGGCCCAgccaggagagaagggagagcggGTAGCAGACCTCCAGTTCAACATGGCCGTAGCCCATGAGATCCTGGGGAACCACGGCCAGGCGGCTGGTCACTACCTCCAGGCAGCCCAGCTGTACCGCTCCCAGGGGGATGGGGCTAGTGAGGGGGACTCCTGTATGAAAATGTCCCACTGTCACCTGCTCCTAAAGGACTGGACCCAGGCAGCTCAAAGCTTCCAGAGGGCTGGAGAGAGCtacaggatggcaggcaagcTGGACTCAGCCACCATGGCCTACAAAGAGGCAGGGAGTCACATGCTCCAGTCAGATGACTTCACCGTGGATGATATCATCACCGTGCTCACTGATTGCCTCGAGCTGAGCAACAACATCAAAGACCCAGAGTTGCTCGGTAAGGTGTACAATGACCTGGGCCTGATTTTCTCCCAGCTGAAGTTGTTCCAGGAGGCAGCCGGGTGCTATGAGCGGGCCCTGCCCCTGGCCAGCACCAGGCCCAGCAGGCTGGCCGTGGTCCTACAGAACCTGGGAGCCGTTCACAACACACTGAGCCAGTACCGGCAGGCCCTGGACTACCACCGCCAGGCAGCCGACCTGCATGggTCTTTGGGCAGTCGTCGTGCTCAGGGCCGCTGCTTCAGTAACTTGGCCTTTGCTCTCAGTCAGCTGGGGGAGCATGaggaggcagcagagaactacCTCCACGCCTTGCAGGCCTTCAAAGACACTGaTGACTATAAGGGCCAATGGCAGACTTGTGAGTGTTTAGGGGAAGTTCATTTTAAGTTGAGAGACCTGGAGAGAGCCACCCTCTACTACAAACAAGCTCTGGGTTTACTGTCAAAGTGCAAGGACTCGTCCAGCTCGGTCCAGGAGCGTCTGGTCAACAAGCTGAGCGAGGCCCTGCAACACAGGCTGTCACTGATCACCCCTGGAAAACCCCAGTGAGTGGAGCTGGCTCAGCAGAGGTGTCTACCGGAGAGccggggaaggaggaggaagccCCGGTGCCAGATGGAGAACAGGCACACACAGTGACCATGGGAGAAGCAGGTGACTCCCAGTCACCGGTGACAGGATC
>XM_021593244.2
CAGACCTGCTACTTCATAGCTTTCCCTGGCTCCACAAACCAGTAACTccctaacattagctagttagcaagCTAACAAGAAAAGCCAGCTAAAACGTGTGATATAGACTAACTAGGGATTACGGCTGTACGGATAATTTACCTAGGTATTTGTTAAGCTAACTAACTAATTGCGACTGCTCTGTTTTGGATGGCTGTTCATCTTGAAAATTCTCCTCATAATGCTATCCTATAGCCACCCCCTGGCGAAATCAATATGGCATCTGATAGCTACCCATCACATGAAGGCAGGAAGAAGAAGAGTGACGAATGTGTAAAGAGCAAAGACAAAGAGGCTGATGTCCTGAAGGTCCAGGTGGACATAGAGGAGCTCACAGCCTCTGGCCACATTGCCCTAAAGCAAGGGGACTGTGAAGAAGCCCTCCGCTGTTTCAAAAAGGCCTTCAAAGCTTCCATAGAGTTAAAGGAGACCAGGGTCCAGCAGGCATGTGCCTTTAACCTGGGAGCTGCCTACGTGGAGGTGGGTAAAGCCCTGAAGGGGCTGGACTTCCTGAAGCGGGCCCAgccaggagagaagggagagcggGTAGCAGACCTCCAGTTCAACATGGCCGTAGCCCATGAGATCCTGGGGAACCACGGCCAGGCGGCTGGTCACTACCTCCAGGCAGCCCAGCTGTACCGCTCCCAGGGGGATGGGGCTAGTGAGGGGGACTCCTGTATGAAAATGTCCCACTGTCACCTGCTCCTAAAGGACTGGACCCAGGCAGCTCAAAGCTTCCAGAGGGCTGGAGAGAGCtacaggatggcaggcaagcTGGACTCAGCCACCATGGCCTACAAAGAGGCAGGGAGTCACATGCTCCAGTCAGATGACTTCACCGTGGATGATATCATCACCGTGCTCACTGATTGCCTCGAGCTGAGCAACAACATCAAAGACCCAGAGTTGCTCGGTAAGGTGTACAATGACCTGGGCCTGATTTTCTCCCAGCTGAAGTTGTTCCAGGAGGCAGCCGGGTGCTATGAGCGGGCCCTGCCCCTGGCCAGCACCAGGCCCAGCAGGCTGGCCGTGGTCCTACAGAACCTGGGAGCCGTTCACAACACACTGAGCCAGTACCGGCAGGCCCTGGACTACCACCGCCAGGCAGCCGACCTGCATGggTCTTTGGGCAGTCGTCGTGCTCAGGGCCGCTGCTTCAGTAACTTGGCCTTTGCTCTCAGTCAGCTGGGGGAGCATGaggaggcagcagagaactacCTCCACGCCTTGCAGGCCTTCAAAGACACTGaTGACTATAAGGGCCAATGGCAGACTTGTGAGTGTTTAGGGGAAGTTCATTTTAAGTTGAGAGACCTGGAGAGAGCCACCCTCTACTACAAACAAGCTCTGGGTTTACTGTCAAAGTGCAAGGACTCGTCCAGCTCGGTCCAGGAGCGTCTGGTCAACAAGCTGAGCGAGGCCCTGCAACACAGGCTGTCACTGATCACCCCTGGAAAACCCCAGAGATGTCTCGGCCCTCGTCTACACACTCAAAATAGAAAAGCTGTTCTGAATGGCCATAGGGCAAAGACTGAGCCCCAAGTGAGTGGAGCTGGCTCAGCAGAGGTGTCTACCGGAGAGccggggaaggaggaggaagccCCGGTGCCAGATGGAGAACAGGCACACACAGTGACCATGGGAGAAGCAGGTGACTCCCAGTCACCGGTGACAGGATCTCTCACTGAGCAGCCGGGCTATCGGACTGTGCTGCCAGGGGCAAACAGGAACCTGAATAATCATTTTGAGCATCCCGACCCCCATTACCAGAACCAGGACCCATCAAACCACCCTGTACTCGCCCAGCAGAGCGAGAATTTATATGAGCGCATTAAACCGATGACAACACAGACTAACAGTGAGACTCCATTGTCCGAGAGCTCCGAAGTTTCACCCACTGCTGCGTCAGATAATGAAGAGACTATACCCCTGTTAAAGAAACGGAAGTCCCAAATCTGCACGGTCATGTAGATGCAAGTCCAGGCTAATGTGGTTGGTTAATTGAAAGTATTCATAGGAATTACTCTATTGAGTGTATTTCTATGGGTAAAATCTGCTCTTTGCAAATTGGTATATAAAATACTAATGCACATGTAAGTGCTACTCTATAATATTGTCTGTCTCATCTCCTGCACGTACAGGTGTTGCCTTGTCATTGCATTTGTCTTCCAAACAATCCCTGTGTGTATGCTGGTCATTGTCCCCCACAATGAAATCGGGGAAGGCACTTTGGATCTGTTTCCGTCCGTTAGTAGGTTCACGTGTTAGTCACAAGcgatatctcagacagcactggcCCGGTTTTGActaaacttgggtgaatgatgcgtcttgccatAGCGTTAAGGCATTTataaaattacactgattggccagATGGTGGCTATGTAACGAGATTGAAAATGCAAACTTTGAAAGGTCACGCCCCTCACCCCGTTTGACCTTAAGTCATGAAATTTAGTAGATCGATCCCTGTCTTCACAAAGAACAAGTTTGTCTCGGGACCCATAAGTTCCGCCATGATGAATTTTCCGGCATTTTGAATTGTGTGAAAAACAGTTAACACTACTTTTCTGTTACCGAATGACCGATCTGCACAAAACTTGATATGTGGCATTTATGGAAAACGATCTCTCAATGTAATATTTGACTGGTAGCTACAACAACATGGCCGCTATTGACCAATAAACATTCACGTGGGTGTGGTCTGGCACATAACTGCATATAAATCAGCCAAGGATATTCATATTGTAACATAATTTGGTACACATGTTGCAAACACTGTCAAGACTCAACATATGCAAGAACATTCATATCGACCTTGCGGTGGCGCCATAATCTGTTTGACTTAGTGATGAAATTTGGCACACATGTTTAGGGATATGAGCTAACCCACACGATATCTCAGACACCACTGGCACAATTTTGATGAAATTTGGGTGAATGATTAGTCATGCCATAGAGATCTGGCATTGACAAAATTACACTTATGGGGAAGGGGGCTATAGTAATCAACTGTACATACGTTAGTCATTCGTGGGGgatgacatgtttactgttgccttatTTCAAGGTATCTTGGTCGTCAATATTCTAAGATTGTCATATTGTGTATTATTTCTTTGATCATGCTAACTTAAATCTCTGCTCTTCTCTTGAATCATGGTTGTACAATTTGAAATAAATGTAATCTGTTTTTGAAGTATTTAA
>TU268030
TGAGCTCTGGGAGTGTctgctctgcagagaagaatagaatCATGGGGAAATGGAGAGTCATTAGCCAGCCACAGATATATCATAAGAGCACCAGCAGAGAAAACAAAACCCCATACATAATTAATGTGCATGGGGATGACCTTGGCTTCCACTGATGATTCACTACCATCCCCCTGTAAACACACACTCATTTCTGCATAGCTGCACTATGTTTGTTATTCTCCCGGTCCCAGAGAAACGATATATCTAAGATGCCTTTAACTTggcattgctgtgtgtgtgtggccaatgTTACACTGCTGCTTGTGATTTAAATTATTATTGAAAAGTTATTTTTGAGATGATGATGTTTGAGCGTGCCTCTTCCTCTCACCTCCAGGAACCTGAATAATCATTTTGAGCATCCCGACCCCCATTACCAGAACCAGGACCCATCAAACCACCCTGTACTCGCCCAGCAGAGCGAGAATTTATATGAGCGCATTAAACCGATGACAACACAGACTAACAGTGAGACTCCATTGTCCGAGAGCTCCGAAGTTTCACCCACTGCTGCGTCAGATAATGAAGAGACTATACCCCTGTTAAAGAAACGGAAGTCCCAAATCTGCACGGTCATGTAGATGCAAGTCCAGGCTAATGTGGTTGGTTAATTGAAAGTATTCATAGGAATTACTCTATTGAGTGTATTTCTATGGGTAAAATCTGCTCTTTGCAAATTGGTATATAAAATACTAATGCACATGTAAGTGCTACTCTATAATATTGTCTGTCTCATCTCCTGCACGTACAGGTGTTGCCTTGTCATTGCATTTGTCTTCCAAACAATCCCTGTGTGTATGCTGGTCATTGTCCCCCACAATGAAATCGGGGAAGGCACTTTGGATCTGTTTCCGTCCGTTAGTAGGTTCACGTGTTAGTCACAAGcgatatctcagacagcactggcCCGGTTTTGActaaacttgggtgaatgatgcgtcttgccatAGCGTTAAGGCATTTataaaattacactgattggccagATGGTGGCTATGTAACGAGATTGAAAATGCAAACTTTGAAAGGTCACGCCCCTCACCCCGTTTGACCTTAAGTCATGAAATTTAGTAGATCGATCCCTGTCTTCACAAAGAACAAGTTTGTCTCGGGACCCATAAGTTCCGCCATGATGAATTTTCCGGCATTTTGAATTGTGTGAAAAACAGTTAACACTACTTTTCTGTTACCGAATGACCGATCTGCACAAAACTTGATATGTGGCATTTATGGAAAACGATCTCTCAATGTAATATTTGACTGGTAGCTACAACAACATGGCCGCTATTGACCAATAAACATTCACGTGGGTGTGGTCTGGCACATAACTGCATATAAATCAGCCAAGGATATTCATATTGTAACATAATTTGGTACACATGTTGCAAACACTGTCAAGACTCAACATATGCAAGAACATTCATATCGACCTTGCGGTGGCGCCATAATCTGTTTGACTTAGTGATGAAATTTGGCACACATGTTTAGGGATATGAGCTAACCCACACGATATCTCAGACACCACTGGCACAATTTTGATGAAATTTGGGTGAATGATTAGTCATGCCATAGAGATCTGGCATTGACAAAATTACACTTATGGGGAAGGGGGCTATAGTAATCAACTGTACATACGTTAGTCATTCGTGGGGgatgacatgtttactgttgccttatTTCAAGGTATCTTGGTCGTCAATATTCTAAGATTGTCATATTGTGTATTATTTCTTTGATCATGCTAACTTAAATCTCTGCTCTTCTCTTGAATCATGG

Function

NR:

description
tetratricopeptide repeat protein 24 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593253.2 False 1642 mRNA 0.55 9 21472944 21479983
XM_021593244.2 False 3252 mRNA 0.48 13 21472944 21483516
TU268030 True 1818 lncRNA 0.38 3 21481293 21483472

Neighbor

gene id symbol gene type direction distance location
LOC110513285 LOC106580187 coding upstream 65747 21390417 ~ 21407197 (+)
LOC110513274 LOC106580182 coding upstream 112120 21357445 ~ 21360824 (+)
zgc:171704 LOC106580162 coding upstream 187203 21283497 ~ 21285741 (+)
trim33l LOC106580136 coding upstream 191111 21270516 ~ 21281833 (+)
LOC110513224 LOC106580132 coding upstream 203140 21265418 ~ 21269804 (+)
LOC110513414 gnrh-r coding downstream 9643 21493159 ~ 21497274 (+)
LOC110513472 creb3l4 coding downstream 136209 21619725 ~ 21624474 (+)
LOC110513504 LOC106580325 coding downstream 148824 21632340 ~ 21643258 (+)
LOC100136306 LOC106580330 coding downstream 165925 21649441 ~ 21713248 (+)
LOC110503897 LOC106571067 coding downstream 236729 21720245 ~ 21733022 (+)
G234491 NA non-coding upstream 2756 21469863 ~ 21470188 (+)
G234480 NA non-coding upstream 13748 21457836 ~ 21459196 (+)
G234468 NA non-coding upstream 32909 21435293 ~ 21440035 (+)
G234463 NA non-coding upstream 45614 21427058 ~ 21427330 (+)
G234439 NA non-coding upstream 84655 21387993 ~ 21388289 (+)
G234496 NA non-coding downstream 2148 21485664 ~ 21485893 (+)
G234497 NA non-coding downstream 2473 21485989 ~ 21486190 (+)
G234504 NA non-coding downstream 14016 21497532 ~ 21497902 (+)
G234500 NA non-coding downstream 17826 21501342 ~ 21501913 (+)
G234654 NA non-coding downstream 67905 21551421 ~ 21554541 (+)
G234340 LOC106580151 other upstream 185942 21286726 ~ 21287002 (+)
G234322 dcst2 other upstream 208438 21264075 ~ 21264506 (+)
G233545 NA other upstream 864219 20608293 ~ 20608725 (+)
G233521 LOC106579937 other upstream 907232 20558776 ~ 20565712 (+)
LOC110512505 LOC106579702 other upstream 1628292 19821356 ~ 19844652 (+)
kiaa0319 LOC106580477 other downstream 534078 22017579 ~ 22037490 (+)
LOC110503910 LOC106580557 other downstream 575026 22057484 ~ 22068080 (+)
G235426 LOC106581355 other downstream 820977 22303641 ~ 22304906 (+)
LOC110514034 NA other downstream 977024 22460524 ~ 22472917 (+)
G235571 NA other downstream 1189220 22672736 ~ 22698834 (+)

Expression


Co-expression Network