LOC110503882 (LOC106580249)


Basic Information

Item Value
gene id LOC110503882
gene name LOC106580249
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21514538 ~ 21539187 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971866.1
ACAACAATACCTTACGCATAACTAATAGCCACAGAACCCAGCGAGGGCCGTTCTACAATAGCAAACAGAACATTCTCAAAGCAGCCTCGTCCAGAAAGAAGCCAGCCGTTCGCTGGACAGTGGAACTGAAACTGCggaaatgtttttttgagatttttgttgctattttttatttaatacattttaaggaGTGAAGCTCGCTATTAAAGCGTCGCTATAACAGTTAGACTTCGAACTAAAAGGGATTCATGCTAAACCATGAACCAAACGAGGAATGTTCAGCTTTTTCTATTGGTGGTCATATCTTCAGtGTTGGGCAGAGCCTCTGAGCTGGCCTTCCTGAAGGAGCCCAATGATGTCATCGCCGTGCGTGACCGGCCCCTGATGCTGGACTGCCAGGTAGAAGGGGAGGGGCCTATCTCTGTGATGTGGCGGCGCAATGGAGTGTCCGTTCCCACCGGGCCGAAGGCTAGCGTGTTGGCCAACGGAACTCTCCTGATCAAGAGCTtccagaagaggagagagagcaacgAGACGGACGCTGGGGAGTATGCCTGTGCTGCCCAGAACCACTATGGCATGTTGATCAGCCGCAAGGCCAGGGTTCAGCTGGCATctcTCCCTAAGTTCCACATACACCCAGAGTCCATGTCGGTGGATGAGGGTGGCGTTGCCAGATTGACCTGCCAGGTGAACGGAATCCCAGAGGCCAGCATCTCCTGGGAGAAAAACAGAACTGCTGTGAATACTGACGataacagGTACACCATCCTGCCCACAGGGATCCTGCAGATAACCGGTGTAAGGCGGGCTGACAGTGGTGTGTATCGCTGCGTAGCCACCAACATCGCTAACACTCGCTACAGCAATGAGGCCCAGCTCACTGTCACTGtggcaGCTCCACGGATCTACAAGGAGCCGGTGATTCTGTCGGGTCCTCAGAACCTGACCATCACTGTGCACCAGACCGCCATCTTGGAGTGCATCGCCACTGGCAACCCTCGACCCATTGTGTCCTGGAGTCGGCTGGacGGGCGCTCCATCGGGGTGGAGGGTATCCAGGTGCTGGGTACGGGGAACCTGATGATCTCAGATGCCAACTTGCAACACTCTGGGGTATACGTGTGCTCTGCTAACCGCCCTGGCACCAGGATGAGGCGTACTGCGTTGGGCAGACTGGTGGTGCAGGCTCCTCCTGAGTTTTTGCAGTGGCCGCAGTCTGTCTCCAGACCAGCAGGGAGCAGTGCAGTGTTCACCTGTATGGCCCAGGGAGTCCCCGAGCCTCACCTCATCTGGCTGAAGAACGGCAAAATCCTGACGCCTGGTGACAACGTCAAGCTCACCAACAATAACAGCACGCTGGCGGTGACGCGCATCACCACGGATGACGAGGCCATCTACCAGTGTATTGCTGAGAACAGCGCTGGCACCAACCAGGCCAGTGCCCGCCTGGCCCTCACCCAGTCCACGGAGTTGCCCGAGGCCCCTCAGGATCTGACGGCCACGGCCCTGTCCCCCACCACTCTACAGCTCACCTGGGCCCAGCCTGCCCCAGAGGTCACCGACGGCATAATCGGATATGTGCTGCACATCCGCATGTTGGGCGAGCCAGACAGCAGAGAGCTGCAGGAGGCTGTCAGTAAGACCACCTTCCAGCATGACTTCACCACCCTGGAGCCTGCCACCACCTACTCCATCTACCTCAAGGCCTACTCCCCTCTGGGAGCCAGCCAGCAGTCCAGCACTGTGGTGGCTACAACACTAGGGGGCGTACCCAGTTCTCCCAGTTTCTTCACCAAGGTGCTGAACAAGACAGCCATGCAGGTGTTCTGGGAGCTGCCCAGTAAGTCGGGCAAGGTACAGGGCTTCAAGCTGTCCTACCGCGAGGTCCCCCAGCCCAACTTCCAGGGGCAAGAAGTATTTCCCGGTCACATCAACACCCACACCATCTCCCATCTAGAACCCACTGCTGTGTATGAGATCCAATTGGTGGCCTACAACGGCAATGGGGACGGCACTGCCAACAAGCGTCTGGTTTCACTGGCTGAGAGTGGTACCAGCGCCAAGACCAGCTCCGGTGGGCAGAGCCCATGTAACTGCAAGCAGGAGGATGAGGGGTCCATGACTGGCATTGTGGTGGGAATCCACACTGGCATGGCATGTATCATTTTCTGTGTGCTGTTCCTCATGTTTGGCTACCGCCGCAGCTTCTTCTGCAGGAAGGGGACCCAAGATGGCTGGTCAGGGCCCCGAGGAGGAGACAGGAACCAGCGGGCTGGCCCACCAAAAGAGGGGGTGATCCGCATGCCCGAGGTCATTGAATTAGTGCCTCAAAGATGTGACTCTATCACTGCTCCAGTGATGGTTGTTAAGGGTCAAGCCCCCCCAGCGCAGTGCCAAGTCCTCATCGAGCAGCCCCCACCATGCCAGCCTGGCACAGGCACCGGCTAAAGCACCCAAACACCATTCCACTTACCTCCCCCAACCCCAGTCCCCTTACCCTGAGAAATGAATGGCTGTTCTATGGTTCCTCCACCTCACCTGCCCACCAACGCCTTAGCCATAGTCTGCCTATTGCAGCATCCAGCCGTAGTTCTagcagtgaatgagagagagagattgagaatgaAACTGAGAGTAAGAGGTGATGTGTTGAGAACTTCTGTTGAATGTACAATACCACAaaggaaaacatttattttataataGCTTCAAGTAAAAGTAGTACCAATGTAGTCATGAGTAACTATTGGGATGTTAGCCCCATTTCTGTCTTGTGTCTTTTACACCAAAGCTGAAAGCCTTATTTTAACATTTTATGTTTAGTTCCATGGATTTGATAGCCATGGAGGAAATGGGCACAGGCCATTTATTATTCAAAATGACTCATTAGGTAAAATGCTGCTGGCTCATCTCTGAAGATAACTGCAATATTACTGTATTCCTTATATTTTCAGTGTGGTATTGGACATTGTGCATCTTCTTAAAACCAAAACTCATAAATAGCTTCATTTTATGTCATTTTAAGTTAATGGCCAATGGTGCCATTTTCAGGTTCTGATAGATATACTGAGGCCTTTTACCAGTTTGAACAGTGAACGTGGCTCTCAGATGATTAGATGTTGAGCTTGAGTCAATGGATGAGATAGAAAGTCTATCAGTCTTACATTGGGGCCAGTACCAAAGTGATTTCTCTGTTCAGCTTgtgatacagtagatatagtgaaTGTTTTCAGTCGCTTGGTGTTCTCTGGTTAGCGCCACAAGATTGCACCTCGGGGCTACGTAACGTGGTCGGCTTTAGCCTTGCCGAACCTGACTGAGTTGATTGTTTGACTGAGTTGATTGTTTGACTGAGTTGATTGTTTGACTGAGTTGATTGTCTCACCGTGTTAGCCTTGAGGCGGTCCGGGGTCGAGGGATCACAGATTCAGCCATTTCTGTTCAACCCCCTATCCCAAACTCTTTGTTAACTTTCTGCTCCCCCACCAAAACGTTTTACCTCCAAAGATAGCTACCTCAGCCTGACGAGAACGTCAGAGCTATCAAGGTAACCATTTTGCCTGTTGTGCTGCTGGTCAAGCATACCTACCTCAACCAAAAGGGTACTTCTGTGCccccttttccttttctttttGGGTGCCAAATGCCAGTCCTGTGCCAGCTGCCACTCCTTGTGTTCAGAGGGTGGTACACTCTTTCGATTCCTCCCTGTCAAGAAAAGGAGGAGGCCTTGGATCGTGATTGAATGTCACTAGGCCCATCTTCTACCCAGAATGTAACTGGTTCGATCTGTGGGTTTGCCAGTTCACTTATGTTGTTTGACATTGTATAATTCCTGATCGCCGATTTTCTGCTTTAATCGCCTGCCTGCTTCTAATCCTGCTATTGGGACTCAACACCTTGTCCAACCCCTGAACGTCTGCCTTAATTTAAAGCGGTTCATTCAGAGTTGGGTCACTTCAGCTACTGATATGCAGTATGGAAGCACATGGATATGATTCAAGTACATATTCTACCTCAGACTCAGCAGCTTCACAAACGGGTGATGGAGAGACAACCATCATTGATGATGTCACAACAAGCGGTCTTGGAGCCCAGCTGTGGAGCACTACAAGAACAACAAACATGTCTCCTCAGTTAAACAGGGAAAGCGAGATGAATGTCTCTTTATTAAGGCACCACCTGCTGCTGCCATCACCATCTCGTCTCACTGGAGGAAGACATGACTCAGAAACGTGCAACAGGAAACAAAGTTGGAAGCCTGACAGAAAGTGAGCGATAAATATGAACGCACAGCATTTTTTAAACTTTGAACATTGCATGAAAGTATGGACATTAAGGAATATAAAGCCCAAGTTTCACCATTCTGTTATGGATGAATTTGCTGACTATTTTGCCCTTTCCTGCAGAATTCCAAAATGTAATTAGTTAGAAATGTATATTTTTGCCATTTTCAGGAAGCTTTCTGTCACCTACCAAAGGTGATTGGTTTGCAGTGCCTCAAATACCTTTGTTGTCATGGGAAAATTCTGTTCAGCAGACCATGGTTAACTTTCTCGAGTGACTAATTTGTCTTGTATTTTGTCTTCATGTCTATTCATATTCAATTCTTACCTCACACTTACTGCACGAATGACACTAGCTTTTACCGTAGACCGCTGTTTCAACAAATATTTCCAAATATTCTATGAAAACCAAGTCGAACGATATCCAAAGATGAATGATTGTTACGGTTTTCAGTCTTTCCTcgattaacttttttttttttttaagttgttTTTAGTTGGGTTCCCGTTATAAGGTGCTGCCATTAGCCAATGATGAGACAAACTAAGAAACACAAGCAGCTTACATAAACAGCTTACATAAACCCCAAAACTAATTACAAAGATAATTCAAGAAACCACCTGTAACACTGTAAAATGTTCACAGATAGTTTTTCACGTGTCTCACTGGCAGACCACTTGAGGCATGGAATTCCACATATTTTCACTTTCTTTTCAACATAACATTTTACTTTGAAAACTGAAAATGGGATATATATTTTCATGTATTGTTACAAATAACTGTCCTTTGAAGTATAGAAATACTATAACCATATTCTAACATTTTAAATAACTTCTGTTCCATTTATTAATGACCTCACCACAGGAATAGCCGTGTTGTGATAGAGCACCGACTTCCCCTTTTTGTAACTACTGAATAAAATCCCGGTCAATTTGTTGGAGATACTCGGGCAAGTCTCCATCAATCACAAGAGGATTCCATTTAGGTACATTTGTTTTCAGATCCTCCAAATGAATTGTGTTGTAACTGTTTGAATGGCTGTGAAAAACGTAGCCTCACTACAAGTTTATGCCTCTGTTTTGTGTGGATGTCCATCTTTCATTGCCAGTTTCTGAAGCTAGTATTCTGTGCAGAATTGGACTAGCTACCGCTACATACCCTAACAAAGTcacatagtgccactgtcctcaAGGTTTTAGTTCAACTGTATCACTGATaccatccttttttttttttttactgtgaatAACCTATCTACCATTTTTTGGGGGCAGTATGATAAGTGTGATACCAAAAGGAAAAATGAAAAACATTATGGTCAATATTTTATTATTTGAATAACAAGACATAAGTTGACCCAATATTTCTTTGaacaaaacaatttttttttttttaaatgatatgcTTTTCTTTTTATAGAACATTTCTTCTTCATTCATTTTATAAATGTTCCCTCTCGAGGTTGGTCCTGCTGCGTATGGGAAACCTTGCCAAAATGTAGACGttcctttttaaaatgttattattgttattaatatTATAATTATTGCCATTGTTGGATTCACTCCTTTCATTTTGATTTCATATTGGTTGGCTCGTTTGGTTTCTGTTTTATTTGTAGTTGAAGGATGTGAACATGTTTGCTAGAAATGTGAGAATTCTAACTAGAACGGTGTGTTGTCAGAAAAAGGTTGTGTAAAAAACTGTATTTTGACATTGAAGGAACGATACCTCAAACTGTCTTGTATTCTCCAAATGGATATTTCCTATCTTAACTCCTTTAGCAGCAGCTCAGCCACAACCATGTTAAGTTCATTTGCAAAGATGGACACTTGCCATACTAAAGTAAGCCATATAGGAGTTTTCCTAAGCCATAATACTACTGTCGTGTATTACAGTCCATACTTTGATATCAGGTCACTGAATTTGAACCTATCAACTGAGTACAGTATTTCTTGATGCCAGACGCACAACCTACCTCTTGCTAAACATTTACACATAATACAAAACACCTGAAATGTAGAGAAGTAGTGAATGAATGCTAGAACCAATGAAAAAATAAATGCTTTAATGTAAACTGCTTTTAAACTAGTTACAGACcagatgaaagagaggaagatgtgtatgtgtaccattatAGCACAACTAGAGACCCCTACAAATGGATCATTGTTTGGTTAATAAATTAATTGATCTAACGCAGAGTAAGATCACATTGTAGTTGTTTTTGTCCCTGACCTTTGAACCATAGGCCTCTGGTTGATATGACTGTTTGAATATGTCAACTGTTTCTTTAAGTTTTTCCTTCTTTCAACTGAAATGACACCTGTAAACCAAATAAAACTAGGATTATTATGTA

Function

NR:

description
PREDICTED: immunoglobulin superfamily DCC subclass member 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971866.1 True 6649 mRNA 0.45 14 21514538 21539187

Neighbor

gene id symbol gene type direction distance location
LOC110503879 LOC106605450 coding downstream 45311 21457830 ~ 21469227 (-)
LOC110513321 LOC106580205 coding downstream 58566 21438546 ~ 21455972 (-)
LOC118946634 NA coding downstream 94260 21416211 ~ 21420278 (-)
LOC110513307 polr3gl coding downstream 125733 21375824 ~ 21388805 (-)
LOC110503878 LOC106605446 coding downstream 183026 21320192 ~ 21331512 (-)
LOC110513430 LOC106580258 coding upstream 12231 21551418 ~ 21587320 (-)
LOC110513449 LOC106580288 coding upstream 49754 21587450 ~ 21609130 (-)
LOC110513497 NA coding upstream 72967 21612154 ~ 21619661 (-)
LOC118944502 LOC106580547 coding upstream 177666 21716853 ~ 21718331 (-)
LOC118946878 NA coding upstream 205238 21744425 ~ 21755710 (-)
G234623 NA non-coding downstream 13607 21500650 ~ 21500931 (-)
G234620 NA non-coding downstream 16774 21497468 ~ 21497764 (-)
G234619 gnrh-r non-coding downstream 17399 21496830 ~ 21497139 (-)
G234617 gnrh-r non-coding downstream 20753 21493224 ~ 21493785 (-)
G234613 NA non-coding downstream 26158 21488093 ~ 21488380 (-)
G235052 NA non-coding upstream 93095 21632282 ~ 21632789 (-)
G235145 NA non-coding upstream 248860 21788047 ~ 21789380 (-)
G235165 NA non-coding upstream 266343 21805530 ~ 21805751 (-)
G235157 NA non-coding upstream 344052 21883239 ~ 21919236 (-)
G234621 NA other downstream 15706 21498408 ~ 21498832 (-)
G234600 NA other downstream 44593 21469661 ~ 21469945 (-)
G234224 LOC106605437 other downstream 333856 21178597 ~ 21180682 (-)
glipr2l LOC106605424 other downstream 862842 20648378 ~ 20652052 (-)
G235092 LOC100194668 other upstream 199658 21738845 ~ 21743411 (-)
G235881 NA other upstream 1034646 22573833 ~ 22574989 (-)
G237047 NA other upstream 1617922 23157109 ~ 23189031 (-)
LOC110514600 ensa other upstream 2232337 23771511 ~ 23780158 (-)

Expression


Co-expression Network