LOC110513504 (LOC106580325)


Basic Information

Item Value
gene id LOC110513504
gene name LOC106580325
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21632340 ~ 21643258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971923.1
AAGTGCCAGCATTCTCATGGTGGACCAGTCATTGCTGCATGCTAACTCTCTCACACTTTAGCCAAGCCCACATATCGAAGCCACCGTCAACAGGAAAATACTAATGGGAAGATGGTGGAACTACATGTTTTGTTTGAATCAGATGGCGCGTcgagtggagatgagaaggattGAAATCAGTGGCGAATACGAAAGGAAATAAGTGAAGTAAAGTGGTAGTTGAAGTTGGTAAATCTAAGCCTAGTTCTTATATTTTTTTGGGTGAGAGTGAGGGTTTTGAATTGATGGAGTTACCTGGGAGATTAATTTTAAGTCTGAAAATCGTGAATGCGTTGGAGAAGtaggtggcggcaataCACAGTAGGTTGTAGTCTGTCATTAAACctcaaaaaagaagaagaagaatccaCACCCACTAACAAGCCAACGCAGCCGGTTCGAACACTCCTAGCAGCAGAAGTGCACATTTTCCATATCGATTTCAAGGAAGTTTCCACAACGTCTCACATAATGAGAGGCGAGAGGGGTCGAGGCCGTGGTGGCCGTTTTGGGGTTCGGGGGGGAGGACCTGTGCCAGGATTTCGCCCATTTGTCCCTCACATCCCCTTTGACCTCTACGTGTGTGAAATAGCCTTCCCTCGTCTGAAGCCTGCCCCTGATGAGACAGCCTTCAGTGAGGCTCTACTGAAGAGGAACCAGGACCTTGGCCCCACCTCTGTTGAACAGTCATCCATCTTGTCACTGGTCACCAAAATTACCAACGTCATTGACAACTTCATCGTTTCAGCTGGGGCTGATGAAGTGGAAATTGAGGAAATGAGACAGGTAGGCTCCTACAAGAAAGGCACCATGACAACAGGACACAATGTTGCAGACCTTGCTGTCATTCTGAAGATATTGCCTTCTGTGGAGACAGTGACCGCTCTGGGAACCAAGGTGGTGGAGACCCTACGCACACAGGACCCTTCGGAAGTACTCTCCATGCTGCCCAACGAGACGGGCTTTGAGATCAGTTCGGCCGACGCCACCGTGAAGATCCTCATTGCCACCGTGCCCCACAACATGCGCAAGCTGGAGCCTGATGTGCACATCGATATGAAGCTCCTGCAGAACTCCCTGGCTGCTGTTCGCCACGCTCGCTGGTTTGAAGAAAATGCCTCCCACTCCACGGTGAAGGTCCTGGTCCGTTTGCTGAAGGACCTGAGGATCCGCTTCCCAGGGTTTGAACCCCTTACCCCCTGGATGTTGGACTTACTGGGTCACTCTGCAGTCATGAACAACCCCAGCAGACAGCCGCTAGCCCTCAATGTGGCCTTCAGGCGGAGCTTGCAGATGCTGTCATCAGGACTTTTCTTGCCTGGTTCAGCTGGAATTGCAGACCCCTGTGAGAATGGACACTACCGTGTATTCACTGTCATGAACCTGGAGCAACAGGACATGGTGTGCCTCACTGCTCAGACCCTGGTGAGGTTGCTGTCTCATGGCGGCTACATGAAGATTCTGGGTCTGGATGGAGACGCTAGCCATCTAGTGGTGGAGACATCCACGTGGGATGGAGTGACAGTGAAGCCTTCTGAGAAGGCATATGAGAAGATGCCGGAGGTGGAATTGGAggtggatgatgatgatgatgatgatgatgatgcagaAATGGAGAGCATGGATACTAAAGAGGTCATGGACACTAAAGAGTGATTGTGGTGACAGACTTTTTCAGTTTGTCATTCAACTGTTTTGAATGGTCCCATTCTGAGGGATGGAGATTAATTTTTTTCTTTTTGTACTGTCTCCTACCCGCGCCTAGTTTAAGGGCATGTTTTGTTTTCAGACAACCCTGATACTAGGGACACAAGGTGTGGCTTCCAATGTTTTTTATGTTTCAGTTTATATCAAGTCTAAACAGAAATTTAACTATTTTCTCTTGGCTTATTGTATGGCAAagattttgattaaaaaaaaaaaacttttattgAAAATTCTGATTTCTATGGTCCACTCCCAATTGATGGTGCTCCAGTGTACAGTTTCTCACAGAGCTGGCTGTCAAAAATGGGTAGATCATGTCATTTTGGTGGTGTCTGAAGTTACTGAGCAGCCAGTGGAGACGTGTCTCTGTTTATAATGTCATCTGGACTATTACATACAGCGGTGTTGTCAGTAATAACTGGGCTTTAATCAATGAACCCAATTACGGAGTCCTTTGACGGCAGACCTGGAAAAAGTCATAATCGTTAGAGGAGCTGTGAAGGGAGGGGGAGGCTGCTAGCGCTCCGCAATTAAAACCCAAGGCTGGCTTATTGAGGTTTTCTCTGGCTAGACGGAGATCTTGATCGAGCCATGGCTGATAGAATATCATCTATTTTGTTTTTGATATAAGTGCAAAAAATACTATGCTATTGGCCCTTAAATTCAAGGATTTATTCTGCCCCGCACAGTGAACAGGGCTTTTTCAATGTGTTAACCTTTTCTTGAATAATAAAGCTGAATAAACATGCCGTAGTTATTGTTGATTCTCCAGCTGACTAACCACATCCCCCTTCAAAGGAATGTTGCAACTGGTATTGGAGTACTTGTCTTCAGATGGCAGAGGTTTCAATTTTTGCATCCTTCTGAGTGTTCCAACCATTCTGAGAAAAAAATACTGTtgtgtcaataacaaaagtgctTGCTATTGTTttcaaaagttttttttctttctcgtCAGTGGTACAAATTGTTAATAATTGTCTCTTGGACCTTGACAATGGTTAGCTTTTCATTGGGTTGTTGATTTGCAGTATCTGTCTACCTGTATactggttgaaaatggcagatttggacacAAGTATCTAAATTGGACCCctctacagtaacatgctatacatgagaTCAGAGCTCTGGGTCTGCGCTTCACAGCTCCGTATGGGTTTTGACACAGCCGTTCTGAACTTGCACCGCGTAGGACAAGAAGGTGCCCCATCCCTCCCCCAAATTGGGCATctttaaaattatatatttttttgctgtaAATTAGGATTACTGGTACTCTGTATTTCAAAGATGAGACGATGAGGGTAATAAATACAACTTTGTCATACAAGGAAGCCAAACACCGGTGAGTACAAATGGGTACTTCACATTACCATATGAAACTTGTAATATAGTGTCAACGTTTATAATCactgtttgatgtacagttactaGATGttatggtgttataccctgggttgtacTGAACATAATGAGACCATGTTTGTTGTATTGTGAAGATTTGCAGTCTACCACAcatctgaatgcactcatgactccattCCATGCTCACCAATTATGACCTGCTTTGAATTGTCTTGAAAGCCTAGCACTGTAAGATCATATTTTATCTTTTTGCTGTTGGCAATAGAATAAGCTTTTAAATtatacccacctgacccagattgtgatttATAATGGGCTGTTTTTTGATTGTGTAAAGGCGGGaatgcagggctgtgttccaaacaagTGTTCctgctctagttcctcaatggCAGAGCTAGGAGACTCAAAtcaccttatagttgaagactcgTCTTTTAGTCATAAGTGTATTGAaattacttaggaactgtgcacactttgtaGAGGTGTGGCCagttggagacaccagttagtcctctcactcaaacccatatttgttttatgttgcacctaccccaaatTTTCCAAGAATTTtcttatgttactgaatgtatccagtgtattttttttttagatatcaTTACCAACAAATGAGGCAAAGTACAGTAAaggtaaaatgcacataaaatcaactaATGTTTGcattgtcaggt

Function

NR:

description
interleukin enhancer-binding factor 2 homolog

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0006955 immune response biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13089 ILF2; interleukin enhancer-binding factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971923.1 True 3809 mRNA 0.44 14 21632340 21643258

Neighbor

gene id symbol gene type direction distance location
LOC110513472 creb3l4 coding upstream 7866 21619725 ~ 21624474 (+)
LOC110513414 gnrh-r coding upstream 135066 21493159 ~ 21497274 (+)
LOC110513388 LOC106580236 coding upstream 148824 21472944 ~ 21483516 (+)
LOC110513285 LOC106580187 coding upstream 225143 21390417 ~ 21407197 (+)
LOC110513274 LOC106580182 coding upstream 271516 21357445 ~ 21360824 (+)
LOC100136306 LOC106580330 coding downstream 6183 21649441 ~ 21713248 (+)
LOC110503897 LOC106571067 coding downstream 76987 21720245 ~ 21733022 (+)
pdia7 LOC106580339 coding downstream 89849 21733107 ~ 21737376 (+)
LOC110513517 LOC100194668 coding downstream 95252 21738510 ~ 21744261 (+)
LOC118964374 NA coding downstream 100463 21743721 ~ 21743856 (+)
G234677 NA non-coding upstream 44538 21587443 ~ 21587802 (+)
G234654 NA non-coding upstream 77799 21551421 ~ 21554541 (+)
G234500 NA non-coding upstream 130427 21501342 ~ 21501913 (+)
G234504 NA non-coding upstream 134438 21497532 ~ 21497902 (+)
G234497 NA non-coding upstream 146150 21485989 ~ 21486190 (+)
G234775 NA non-coding downstream 117879 21761137 ~ 21761338 (+)
G234799 NA non-coding downstream 160625 21803883 ~ 21804116 (+)
G234812 NA non-coding downstream 222535 21865793 ~ 21867110 (+)
G234813 NA non-coding downstream 224526 21867784 ~ 21868301 (+)
G234817 NA non-coding downstream 237793 21881051 ~ 21882985 (+)
G234340 LOC106580151 other upstream 345338 21286726 ~ 21287002 (+)
G234322 dcst2 other upstream 367834 21264075 ~ 21264506 (+)
G233545 NA other upstream 1023615 20608293 ~ 20608725 (+)
G233521 LOC106579937 other upstream 1066628 20558776 ~ 20565712 (+)
LOC110512505 LOC106579702 other upstream 1787688 19821356 ~ 19844652 (+)
kiaa0319 LOC106580477 other downstream 374336 22017579 ~ 22037490 (+)
LOC110503910 LOC106580557 other downstream 415284 22057484 ~ 22068080 (+)
G235426 LOC106581355 other downstream 661235 22303641 ~ 22304906 (+)
LOC110514034 NA other downstream 817282 22460524 ~ 22472917 (+)
G235571 NA other downstream 1029478 22672736 ~ 22698834 (+)

Expression


Co-expression Network