LOC110513517 (LOC100194668)


Basic Information

Item Value
gene id LOC110513517
gene name LOC100194668
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21738510 ~ 21744261 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593310.2
AATGTAGCTACACTTTTGAAGATACAGGTAGCTTTAAGCCTTCATGCACATAATTGATACCACAGAGCTGGTCATTTATTGGGTTTCTATATAATGTCCATATATGTACTGCGGCAtaggatttgatttgatagggtaATCATACGATGAAAACAATATTAACTTGAAGATAGCGCCCACTGGCGACTTCCTCTTTCGTAGTCACGCAGATTGGGTTGTACGGCTATTCATCAACATTTCCTCGTCCTTAATTGGTCATTTCTTGCCCAACCCGCCCAGCCACAAACAAATAAGCCTTTCCTTTGCTGCTTTTGAGAACTTGGTAGGCGGTTGATCAACGCACGCTGCCAAAATGATGGGAAGACCAATCGTCGTGTTGAGCCAGAATATGAAAAGGGAGTCTGGACGCAAGGTTCAGAAAGGGAACATCAGTGCCGCAAAGGCAATAGcagatgtcatcagaacatgcCTGGGACCAAGAGCCATGATGAAGATGCTGCTAGACCCCATGGGCGGCATTGTCATGACCAACGATGGCAATGCCATCCTCCGAGAGATCCAAGTGCAGCACCCGGCAGCCAAGTCCATGATTGAGATCAGCCGCACCCAGGATGAGGAGGTGGGAGACGGCACCACGTCAGTCATCATTCTCGCTGGAGAGATGCTGTCTGTAGCAGAGCAGTTCTTGGAGCAGCAGATGCACCCCACAGTCATCATTAGTGCCTACAGACACGCCCTGGACGACATGCTCGACATGCTCAAAGACATCAGCACCCCGGTGGATGTGAATGACAGGGCACAGATGCTGAAGATCATCAACTCTGCCATCTGCACCAAGGCCTTGAGTCGTTGGTCTACCATGGCGTGTAATATTGCCCTGGACGCCGTGCGCACTGTGGAGTTGGAGGAGCACGGACGCAAGGAAATCAACATTAAGCTGTACGCCAAAGTGGAGAAGGTGCCTGGTGGCTTCATTGAGGACTCATGTGTGCTAAAAGGCGTGATGGTCAACAAGGACGTCACTCACCCCCGCATGCGCAGAATGATCAAGAACCCCCGCATCATCCTGCTGGACTGCTCCCTGGAGTACAAGAAGGGCGAGAGCCAGACTGACATTGAGATCACACGTGAGGAAGACTTTTCCAGGATCCTTCAGATGGAGGAAGAGTATATCCAGACGATCTGTGAAGACATCATCCGCCTCAAGCCAGACCTCATCTTCACTGAGAAGGGCATCTCAGACCTGGCACAACACTATCTGATGAAGGCCAACATCACAGCCATCCGCCGTGTCAGAAAGACTGACAACAACCGCATTTCAAGGGCATGTGGGGCTCGCATTGCCAGCCGTACAGACGAGCTGCGTGAGGAGGACGTGGGAACCGGCGCCGGCCTGTTTGAGATCAAGAAGATTGGAGATGAGTACTTCACCTTCGTCACAGAGTGCAAAGACCCCAAAGCCTGCACCATCCTGCTGAGAGGAGCCAGCAAAGAGATACTGGCTgaGGTGGAGCGTAACTTGCAGGATGCCATGCAGGTGTGTCGTAATGTGCTACTGGACCCATCTCTACTCCCTGGAGGCGGGGCGGTGGAGATGGCTGTGTCCAAGAGGCTGATGGAGCGTTCCAAGACCCTGACCGGGGTGGAGCAGTGGCCCTACCGTGCCGTGGCCCAGGCCCTGGAGGTTATCCCCCGTACACTCATCCAAAACTGTGGAGCCTCCACCATTCGCGTGCTCACCTCTCTCAGGGCCAAGCACACCCTGGAGGCCTGTGCATCATGGGGTGTGAACGGAGAGACTGGCACCTTGGCAGACATGATGGAGCTAGGCATCTGTGAGCCACTGGCTGTGAAGGCCCAGACTTACAAGACTGCTGTGGAGACGGCCATCTTGCTACTCCGCATTGATGACATTGTGTCTGGAATCAAGAAGAAAGGTGATGACCAGgctggaggaggacagggagctgagtgaagatgggggaggaggaaaggaatggGTTGGTTGACCATTGGGCAAACAGACTGTGGTAGTGTACACAGGACAGCCTACTGTTCTCTTTTGGGATGCTATTTTCCAAAAAACATTGTTTGGCCTGGATTGTCAACCAAGTATGTGTCTCGATAGTCAAGCGTACACTGTAGCCATGTGTTTTTGATTTGCTATAAAATTCTAACCGAATGCTG

Function

NR:

description
T-complex protein 1 subunit gamma-like

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09495 CCT3, TRIC5; T-complex protein 1 subunit gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593310.2 True 2187 mRNA 0.52 14 21738510 21744261

Neighbor

gene id symbol gene type direction distance location
pdia7 LOC106580339 coding upstream 1134 21733107 ~ 21737376 (+)
LOC110503897 LOC106571067 coding upstream 5488 21720245 ~ 21733022 (+)
LOC100136306 LOC106580330 coding upstream 25262 21649441 ~ 21713248 (+)
LOC110513504 LOC106580325 coding upstream 95252 21632340 ~ 21643258 (+)
LOC110513472 creb3l4 coding upstream 114036 21619725 ~ 21624474 (+)
LOC110513574 LOC106580380 coding downstream 29407 21773668 ~ 21789374 (+)
arhgef2 LOC106605464 coding downstream 46072 21790333 ~ 21845588 (+)
LOC110513614 LOC106580392 coding downstream 101871 21846132 ~ 21855155 (+)
LOC110513633 LOC106580396 coding downstream 113057 21857318 ~ 21884768 (+)
LOC110513748 decr1 coding downstream 144752 21889013 ~ 21893991 (+)
G234677 NA non-coding upstream 150708 21587443 ~ 21587802 (+)
G234654 NA non-coding upstream 183969 21551421 ~ 21554541 (+)
G234500 NA non-coding upstream 236597 21501342 ~ 21501913 (+)
G234504 NA non-coding upstream 240608 21497532 ~ 21497902 (+)
G234497 NA non-coding upstream 252320 21485989 ~ 21486190 (+)
G234775 NA non-coding downstream 16876 21761137 ~ 21761338 (+)
G234799 NA non-coding downstream 59622 21803883 ~ 21804116 (+)
G234812 NA non-coding downstream 121532 21865793 ~ 21867110 (+)
G234813 NA non-coding downstream 123523 21867784 ~ 21868301 (+)
G234817 NA non-coding downstream 136790 21881051 ~ 21882985 (+)
G234340 LOC106580151 other upstream 451508 21286726 ~ 21287002 (+)
G234322 dcst2 other upstream 474004 21264075 ~ 21264506 (+)
G233545 NA other upstream 1129785 20608293 ~ 20608725 (+)
G233521 LOC106579937 other upstream 1172798 20558776 ~ 20565712 (+)
LOC110512505 LOC106579702 other upstream 1893858 19821356 ~ 19844652 (+)
kiaa0319 LOC106580477 other downstream 273333 22017579 ~ 22037490 (+)
LOC110503910 LOC106580557 other downstream 314281 22057484 ~ 22068080 (+)
G235426 LOC106581355 other downstream 560232 22303641 ~ 22304906 (+)
LOC110514034 NA other downstream 716279 22460524 ~ 22472917 (+)
G235571 NA other downstream 928475 22672736 ~ 22698834 (+)

Expression


Co-expression Network