LOC118946878


Basic Information

Item Value
gene id LOC118946878
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21744425 ~ 21755710 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971926.1
agagctctaaagaggcccgagttggatgaccgatAAAAAAAAGTTTTCCTTGTTGGAGCttgtttttttccgagttccGAGTTGTTTTGAACGGTCggaagtcggagatttccgacttcccagttgttttgaagaCGTCATAACATCGAGCATATGAGATAGGACTACACTTTTCGACTGAACTAACGGCTCCCATTTTTTGTCGGATGTCAAATATTGTTCACATCCACCCAAACTTCTCGTTTATTTATTGGTCTGGCCACAGGGAAGTCTGGGTTCTGAATTACAAGAAAGCAACCCCTTGCACGTCAGTTTCAAAGTAGGCCTATCTTATCTGTACCCCAGGGGTATTTACCACTAAAGTTATCGAAGTGAAAGGGTCAAGACGAGTAAAATATGGCAGCTGCGCCAGCTAGAAGAAAACACGGAGCGTGTCTGCTTCGAATCAAAGAAAATTGTCCATTGCGGAAATTTAGGAAAAACAGGTGTTACGATGTTACAGCCACATCTTCGGCTGGTGGTGGGGTGTGTTGGGGAGACTTCAGTAAGCACCCCATTTCTGCATCCAAAACCGGACCTATCAACACCATCTATGTagagcccctccctccctcctatcagTCTATTCACCGTCCCCACCAATCACAGGACCCCATTGCCGTGGATATGGAGGTGGTCCGACCCCAAGCTCCTATTACGGGGGTAATGAGTCTCCCCCCATCCTCTGTACTGGCTCCAGGGCCTCTGGTTCCCAACCTCCAGCCTGCCTACCAGCACAGACGCCTCCCCTCCGCAGCATCCAGTGAGGCCAGCATGGAGCTGGACAGCGGTGTCGACccagagactggagagagagccCAGAGATGACAACACTACTCTTCCGCTGTTTCTATCTGGCCTGATCCTGGAGATCTGGGTCAGATATATTCAGTGTTTCAGATACAATGAGTGTCTAGAACAGGTCAAGTGGTTTGGAACCTGGCTGTACAGACTATCCCAATGTTGTGAAATACTTTTCTCATCCCCTTTACATTGGTAGGTGAACAAGCTTTAAAAAGTATCCATCAGGGAATATGAGGGGACATTGTTTTTATTAGGGTGTATTCAGGCTTCTGGTACACTGCCATATgcttctatacagggctgggaaAGGCACAACTTGAAATGGCATTTAATTGCTCCCTTTTCTCATATTCTGAGCCATTGGCCAGATGAGTCAACAAAGAAGGCTCCCTTCATATAGCTTTGAATGGTCTTCTCAGGTCAGCGTATAGAGACGAAGCCCAGGAATCCATGCACTTGCACGGTCTGTTgacacgtacagtaccagtcaaaagtttggacacacctactaatacAAGGGtattagtattttctacattgtagaatgatagtgaagacaactatgacataacacatcgAATCATGTTGTACCAAaagtgttaacaaatcaaaatatcgtcacccttcgccttgacagctttgcacactggaatgcttttccaacagtcttgaaggagttcccacatatgctgagcacttgctggctgcttttccttcactctgcagtccaactcatcccaaaccatctcaattgggttgaggtcaggtgattttggaggccaggtcatctgatgcagcaccccatcactctccttcttggtcaaatggccATCACAcagctggaggtgtgttgggtcattgtcctgttgaaaaacatgaTAGtcccaaaccagatggaatggcgtatcactgcagtaTGTGGtgataaccagcatggctaagtGGGCCATGAATTTGAAACAATCACtgagtgtcaccagaaaagcacccccacaccacttcttccaagcttcacggtgggaaccacatgcagagagatctgttcacctactctgcgtcacaaagacacggcggttggaaccaaaaatctcaaatttggactcatctgaCCAAAGAACATATTTCCACCTTTCTAATgtacattgctcatgtttcttggcctaagccaGTCTAATTGtcctttagtggtttctttgcagcaattcgaccataaaggcccgattcacagttgatgttcagatgtgtacttgaactctgaagaatttatttgggctgcaatttctgaggctggtaactaatgaacatttcctctgcagaggtaactctgggtcttcctttcctgtgacagtcctaatgagagctagtttcatcatagggcttggtttttgcaactgcacttaaaATGtaccatattgactgaccttcatgtattaaagtaatggactgtcatttctctttgcttatttgagcggttcttgccataatatggatttatGACCACCCCTACCtaatcacaactgattggctcaaacacattgaaacaaattccataaaatgttaaaaataaaacacttaaAGCAAACCTGTTTATTGAAATTCATTCTAGGGGACTACctcatgaggctggttgagagaatgccaagagtgtgcaaagctgtcaaggcaaagggtaacGATATTTTGATGTACTACATGAGTcaatgtgttatgtcatagttgtcttcactattattctacaatgaaataaagaaaaaccctggaatgagtaggtgtccaaacctttaACTTGACAAAAATACAGtcaaacagtaaacaaaaaaaataagtAAACCATGACCTATTGCATGGTTTTATGACTTCCTTAAAGGCATATTCAACAGTCAGGGATGGGAGTTAACACCCAGATAAAAATAGAACCTTTTGACATAACCAGAAGTAATATTTTATCTGTACTCTTCACTCAGTTCTTGTTTTTCAATATGATGTGGTGAATTGCAATGTTTCTTCCCCCATGCATTTAACTTTAATAAAGCTGAAGACAa
>TU268720
TCAAATATTGTTCACATCCACCCAAACTTCTCGTTTATTTATTGGTCTGGCCACAGGGAAGTCTGGGTTCTGAATTACAAGAAAGCAACCCCTTGCACGTCAGTTTCAAAGTAGGCCTATCTTATCTGTACCCCAGGGGTATTTACCACTAAAGTTATCGAAGTGAAAGGGTCAAGACGAGTAAAATATGGCAGCTGCGCCAGCTAGAAGAAAACACGGAGCGTGTCTGCTTCGAATCAAAGAAAATTGTCCATTGCGGAAATTTAGGAAAAACAGGTGTTACGATGTTACAGCCACATCTTCGGCTGGTGGTGGGGTGTGTTGGGGAGACTTCAGTAAGCACCCCATTTCTGCATCCAAAACCGGACCTATCAACACCATCTATGTagagcccctccctccctcctatcagTCTATTCACCGTCCCCACCAATCACAGGACCCCATTGCCGTGGATATGGAGGTGGTCCGACCCCAAGCTCCTATTACGGGGGTAATGAGTCTCCCCCCATCCTCTGTACTGGCTCCAGGGCCTCTGGTTCCCAACCTCCAGCCTGCCTACCAGCACAGACGCCTCCCCTCCGCAGCATCCAGTGAGGCCAGCATGGAGCTGGACAGCGGTGTCGACccagagactggagagagagccCAGAGATGACAACACTACTCTTCCGCTGTTTCTATCTGGCCTGATCCTGGAGATCTGGGTCAGATATATTCAGTGTTTCAGATACAATGAGTGTCTAGAACAGGTCAAGTGGTTTGGAACCTGGCTGTACAGACTATCCCAATGTTGTGAAATACTTTTCTCATCCCCTTTACATTGGTAGGTGAACAAGCTTTAAAAAGTATCCATCAGGGAATATGAGGGGACATTGTTTTTATTAGGGTGTATTCAGGCTTCTGGTACACTGCCATATgcttctatacagggctgggaaAGGCACAACTTGAAATGGCATTTAATTGCTCCCTTTTCTCATATTCTGAGCCATTGGCCAGATGAGTCAACAAAGAAGGCTCCCTTCATATAGCTTTGAATGGTCTTCTCAGGTCAGCGTATAGAGACGAAGCCCAGGAATCCATGCACTTGCACGGTCTGTTgacacgtacagtaccagtcaaaagtttggacacacctactaatacAAGGGtattagtattttctacattgtagaatgatagtgaagacaactatgacataacacatcgAATCATGTTGTACCAAaagtgttaacaaatcaaaatatcgtcacccttcgccttgacagctttgcacactggaatgcttttccaacagtcttgaaggagttcccacatatgctgagcacttgctggctgcttttccttcactctgcagtccaactcatcccaaaccatctcaattgggttgaggtcaggtgattttggaggccaggtcatctgatgcagcaccccatcactctccttcttggtcaaatggccATCACAcagctggaggtgtgttgggtcattgtcctgttgaaaaacatgaTAGtcccaaaccagatggaatggcgtatcactgcagtaTGTGGtgataaccagcatggctaagtGGGCCATGAATTTGAAACAATCACtgagtgtcaccagaaaagcacccccacaccacttcttccaagcttcacggtgggaaccacatgcagagagatctgttcacctactctgcgtcacaaagacacggcggttggaaccaaaaatctcaaatttggactcatctgaCCAAAGAACATATTTCCACCTTTCTAATgtacattgctcatgtttcttggcctaagccaGTCTAATTGtcctttagtggtttctttgcagcaattcgaccataaaggcccgattcacagttgatgttcagatgtgtacttgaactctgaagaatttatttgggctgcaatttctgaggctggtaactaatgaacatttcctctgcagaggtaactctgggtcttcctttcctgtgacagtcctaatgagagctagtttcatcatagggcttggtttttgcaactgcacttaaaATGtaccatattgactgaccttcatgtattaaagtaatggactgtcatttctctttgcttatttgagcggttcttgccataatatggatttatGACCACCCCTACCtaatcacaactgattggctcaaacacattgaaacaaattccataaaatgttaaaaataaaacacttaaAGCAAACCTGTTTATTGAAATTCATTCTAGGGGACTACctcatgaggctggttgagagaatgccaagagtgtgcaaagctgtcaaggcaaagggtaacGATATTTTGATGTACTACATGAGTcaatgtgttatgtcatagttgtcttcactattattctacaatgaaataaagaaaaaccctggaatgagtaggtgtccaaacctttaACTTGACAAAAATACAGtcaaacagtaaacaaaaaaaataagtAAACCATGACCTATTGCATGGTTTTATGACTTCCTTAAAGGCATATTCAACAGTCAGGGATGGGAGTTAACACCCAGATAAAAATAGAACCTTTTGACATAACCAGAAGTAATATTTTATCTGTACTCTTCACTCAGTTCTTGTTTTTCAATATGATGTGGTGAATTGCAATGTTTCTTCCCCCATGCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971926.1 False 2885 mRNA 0.43 4 21744425 21755710
TU268720 True 2650 TUCP 0.43 4 21744451 21755501

Neighbor

gene id symbol gene type direction distance location
LOC118944502 LOC106580547 coding downstream 26094 21716853 ~ 21718331 (-)
LOC110513497 NA coding downstream 124764 21612154 ~ 21619661 (-)
LOC110513449 LOC106580288 coding downstream 135295 21587450 ~ 21609130 (-)
LOC110513430 LOC106580258 coding downstream 157105 21551418 ~ 21587320 (-)
LOC110503882 LOC106580249 coding downstream 205238 21514538 ~ 21539187 (-)
LOC110513558 LOC106580365 coding upstream 947 21756657 ~ 21760819 (-)
pmvk pmvk coding upstream 129071 21884781 ~ 21891946 (-)
LOC110513756 LOC106580458 coding upstream 146763 21902473 ~ 21926314 (-)
LOC110503903 LOC106605471 coding upstream 181472 21937182 ~ 21949846 (-)
LOC118944504 LOC106605473 coding upstream 283768 22039478 ~ 22040884 (-)
G235052 NA non-coding downstream 111636 21632282 ~ 21632789 (-)
G234623 NA non-coding downstream 243494 21500650 ~ 21500931 (-)
G234620 NA non-coding downstream 246661 21497468 ~ 21497764 (-)
G234619 gnrh-r non-coding downstream 247286 21496830 ~ 21497139 (-)
G235145 NA non-coding upstream 32337 21788047 ~ 21789380 (-)
G235165 NA non-coding upstream 49820 21805530 ~ 21805751 (-)
G235157 NA non-coding upstream 127529 21883239 ~ 21919236 (-)
G235200 NA non-coding upstream 132381 21888091 ~ 21889440 (-)
G235092 LOC100194668 other downstream 1014 21738845 ~ 21743411 (-)
G234621 NA other downstream 245593 21498408 ~ 21498832 (-)
G234600 NA other downstream 274480 21469661 ~ 21469945 (-)
LOC110513321 LOC106580205 other downstream 288709 21438546 ~ 21455972 (-)
G234224 LOC106605437 other downstream 563743 21178597 ~ 21180682 (-)
G235881 NA other upstream 818123 22573833 ~ 22574989 (-)
G237047 NA other upstream 1401399 23157109 ~ 23189031 (-)
LOC110514600 ensa other upstream 2015814 23771511 ~ 23780158 (-)
G237657 LOC106605316 other upstream 2424846 24180556 ~ 24183964 (-)
G237832 NA other upstream 2765509 24521219 ~ 24521544 (-)

Expression


Co-expression Network