pmvk (pmvk)


Basic Information

Item Value
gene id pmvk
gene name pmvk
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21884781 ~ 21891946 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593461.2
CAATTATAAGAATGACTACacctttaaataaataaatcaatataGTAAAAgtattgaaatatatattttctctaACAAATTCGATCAAATGAGCACATTTTATATTTAATGGCGCCTGTTATATGTATATTACTGTAGCCCAACCAACCATAATGCATGTGGTACGGTTAATTTGTACACGAAGAGGCTAGCTACACTGTATGAAAAACAAAACACATAAATTGGTTGCTGCAACGTTTTTTCGATGGCGACAGTAGAACCCAAACTCATCCTTTTATTTAGCGGGAAACGCAAATCTGGAAAAGATTACGTGACGGATTTGATTCACCAAAGACTAGGTCCAGATGTATGCTGTATCTTGCGTCTCTCGGGTCCTCTTAAACAGCAATACGCACAGGACCATGGATTGGACTTTGATGAGCTGTTGGGAGCAGGTGAGTACAAGGAGAAGTACCGTGCTGACATGATCCAGTGGGGTGAGAAGCAGAGGGAGAAGGACCCAGGGTTCTTCTGTCGTGTGGCCATCAAGGAAGCCCAGCAGCCTATCTGGATTGTGAGTGATACGCGCCGTCTGTCAGACCTGCAGTGGTTCTGGAGGGAGTATCCTAGTCAGTCTCGCTGTGTTCGGGTGGAGGCCTCAGAAGAGACacggagggagaggggctgggagTTCACAACAGgaatAGATGATGCAGAGTCTGAATGTGGGCTCGACCAAGGAGTGGATTTTGATTGGATAATCAAAAATGAGGGCGATGGATCCCAACTGGAGGAGCAGCTTGCTACTGGGCTGCTCTCAATAGCCAAAGAAAAGGCAAAAGAAGACTGAATTGGAGGGGCCATTACACAGCTGTAGGAACTTGCTGAAGGCTCTTATTGTTGGAAAGTGTAGTTGGGTATACATTACACTATTTTCTGTGAAAATCCTAGAACATCTGTCACACTGAGGAGCAGCAGAAAGTGGGAATATGTAGTATTTATTTCTCTACAGTGTTCTGTACTATCAACTAAGTAGCAGGGCAAGAATACTAAAATCTGATCAAAAACCCAAACATGAACGGTGTGTATATTAGCACTGACCGATATATGAATTTAcatggatcacacacacacacaactgccaAAATTAAACACTTGAGAAAATaaaggatacaaagtatattgaaagctgGTGCTTCCACACGGGTGTGgtttgagttaattaagcaattaaaacatcccatcatgcttagggtgatgtataaaaatgcccagtagcccattattttggctaccatggctagaagagatgTGCCTGTCACATTCATCCAATAAAGTTCAACACTTTAATAgctgccaaggtgcattgaaactTTTCTGGTGCCCTATTAATTGATGTACGTTGGAGTTTCCTTTGTGTTTACCTGCACTTAGTGATGTCCTCCATGCAGGAGGCAAATGTCATCAAGACCTAATGTGCAGATGACTTAATCTGTACTTATATAAGTGTCATTGTGCCATTTTTTAATTTTGTTTTTAATCGTCTTAGATTGTACAATAGGCTACTAGAAAAGAGTTTTAGTTGCACATATGTTGACCCATGGTAAAATTAGCACAATACTGCATTACACACCCATTCAACAGGATTAAATGTACTAGACACAGACATGATCAATGTTCTAATAGCAGGGTAAGTGTTAGTtcgtaaaacattttaaagtaGACATGAGGGAATCAATGTTCACATTTTGAAAGAGTAACTCCATAGCACTCAATTTCTAAATTAAGAGTTGCGTCAAACTGAAGAAAATAAATggggaaaaaa
>TU268790
gtttcctttattttggTGTTTACCTGCACTTAGTGATGTCCTCCATGCAGGAGGCAAATGTCATCAAGACCTAATGTGCAGATGACTTAATCTGTACTTATATAAGTGTCATTGTGCCATTTTTTAATTTTGTTTTTAATCGTCTTAGATTGTACAATAGGCTACTAGAAAAGAGTTTTAGTTGCACATATGTTGACCCATGGTAAAATTAGCACAATACTGCATTACACACCCATTCAACAGGATTAAATGTACTAGACACAGACATGATCAATGTTCTAATAGCAGGGTAAGTGTTAGTtcgtaaaacattttaaagtaGACATGAGGGAATCAATGTTCACATTTTGAAAGAGTAACTCCATAGCACTCAATTTCTAAATTAAGAGTTGCGTCAAACTGAAGAAAATAAATgggga

Function

symbol description
pmvk Predicted to enable phosphomevalonate kinase activity. Predicted to be involved in cholesterol biosynthetic process and isopentenyl diphosphate biosynthetic process, mevalonate pathway. Predicted to act upstream of or within cholesterol metabolic process; phosphorylation; and sterol biosynthetic process. Predicted to be located in cytosol. Human ortholog(s) of this gene implicated in porokeratosis. Orthologous to human PMVK (phosphomevalonate kinase).

NR:

description
PREDICTED: phosphomevalonate kinase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593461.2 False 1804 mRNA 0.40 5 21884781 21887272
TU268790 True 419 lncRNA 0.34 2 21884786 21891946

Neighbor

gene id symbol gene type direction distance location
LOC110513558 LOC106580365 coding downstream 123962 21756657 ~ 21760819 (-)
LOC118946878 NA coding downstream 129071 21744425 ~ 21755710 (-)
LOC118944502 LOC106580547 coding downstream 166450 21716853 ~ 21718331 (-)
LOC110513497 NA coding downstream 265120 21612154 ~ 21619661 (-)
LOC110513449 LOC106580288 coding downstream 275651 21587450 ~ 21609130 (-)
LOC110513756 LOC106580458 coding upstream 15201 21902473 ~ 21926314 (-)
LOC110503903 LOC106605471 coding upstream 49910 21937182 ~ 21949846 (-)
LOC118944504 LOC106605473 coding upstream 152206 22039478 ~ 22040884 (-)
LOC110513791 LOC106580504 coding upstream 156117 22043389 ~ 22051474 (-)
LOC110513818 gbp coding upstream 202584 22089856 ~ 22091328 (-)
G235165 NA non-coding downstream 79030 21805530 ~ 21805751 (-)
G235145 NA non-coding downstream 95401 21788047 ~ 21789380 (-)
G235052 NA non-coding downstream 251992 21632282 ~ 21632789 (-)
G234623 NA non-coding downstream 383850 21500650 ~ 21500931 (-)
G235200 NA non-coding upstream 819 21888091 ~ 21889440 (-)
G235229 NA non-coding upstream 55832 21943104 ~ 21943891 (-)
G235235 NA non-coding upstream 64505 21951777 ~ 21952115 (-)
G235236 NA non-coding upstream 64962 21952234 ~ 21952452 (-)
G235274 NA non-coding upstream 119633 22006905 ~ 22007104 (-)
G235092 LOC100194668 other downstream 141370 21738845 ~ 21743411 (-)
G234621 NA other downstream 385949 21498408 ~ 21498832 (-)
G234600 NA other downstream 414836 21469661 ~ 21469945 (-)
LOC110513321 LOC106580205 other downstream 429065 21438546 ~ 21455972 (-)
G235881 NA other upstream 686561 22573833 ~ 22574989 (-)
G237047 NA other upstream 1269837 23157109 ~ 23189031 (-)
LOC110514600 ensa other upstream 1884252 23771511 ~ 23780158 (-)
G237657 LOC106605316 other upstream 2293284 24180556 ~ 24183964 (-)
G237832 NA other upstream 2633947 24521219 ~ 24521544 (-)
G235276 NA non-coding upstream 117772 22009718 ~ 22010013 (-)

Expression


Co-expression Network