LOC110513756 (LOC106580458)


Basic Information

Item Value
gene id LOC110513756
gene name LOC106580458
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21902473 ~ 21926314 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593474.2
GTGCTGCTGAGCACGCTCTATTCCTGCGGCGGGAAGAGAGGAGGTGATTTGCGCGTTTGGCTAGTTTCCCAACGTCGGGGACGGAGGTGCGACAGTTAAAGATTAGCGTGATAGTGCTTCCTTTAAATACCGGGCACCGACTGATCAAAGCGTCCAATTCATTGCAGATCCTCGGTCAGTGCAGCTATCTGGTACGCGCTCCCGTCCCCAAACCTAACCCGAGATGGCAAACGCGTACCTGCAAGGAGTAGAGATCTCTGCATCACAGTTCCTGGATATTTTTCACCATTATGATAACGATGGTAATGGATATATTGAAGGGAAGGAGTTGCAGAGTTTTATAAAAGAACTTCAGCAAGCTCGAAAACAGGCAGGACTTGAGCTTACAGACCAAATGAAGGCTTTTGTACAGGAATATGAGAAAAATACAGATGCCAAAATTGGAATTGTTGAGCTAGTACAAATATTGCCCACAGAAGAGAACTTCTTGTTATTTTTCCGGCAACAGTTGAAGTCTTGTGCAGAATTTATGCAGGCTTGGCGATGTTATGATGCAGACCATAGTGGCTACATTGAAGCAGATGAGCTGAAGAACTTTTTGAAAGATCTGCTTCAGAAGGCTAAGAAACCATATGACGAAAAGAAGTTAGACGAGTATACACATACCACACTCAAAATATTCGACTCAAACCACGATGGGAAGTTGTGTTTGGCAGAAATGGCGAGgCTGCTACCGGACGAGGAGAACTTTCTACTCAAGTTTCAGAATGTGAAGATGGTGAGGAGAGAGTTCAACAAGATCTTTGAGTTATACGATCAGgatGAGAATGGTTATATGGATGAGAATGAGCTGGATGCCCTCCTCAAAGATTTGTGTGAGAAGAACAAGAAGGTGCTGGAAGTCAACAAAATCCCCACATATAAGACCGCCATTATGGCGCTATCAGACGGGGGCAAGCTATACAGGACAGAGCTAGCTCTTGTGCTCTGTGCTGAGGACATTTCAGCCCCTGCCCCCTTATAAACCACTCCTCTTTCCACCTAACCACACCCCCTCCATCCCCTTCTAACCCGCCGCCCTTCCCCTCACTCATGAATTGTGTAAAGATACTGTCGCTTGAAACTCCAAGGATGTAgggtgttttttttgtttcagtttttgcttttctttcaataaATCTGTCAATTTgccagtgacagtgtgtgtgtagctaGGGCACATTATCAGAGACATAGGGTGTCACATACTTTTCAAATCTTTTGTTTCTATACTCTTTGTAAATGTACAGATTTTTGTAACAATGAGATTGATACCACCATTGAAAGTCCCTGTACTTTGTCCTCTCTATACTACATACTCCAGGACTGTAGCCTCTCATTGGCTGAAAGAGAGGGTGTGTCCCCTACTGACCAATGACAACAATGTTTACCGTATTGTTAATTAATATCTCTACACCAAGTAGTCAAACTACTAGTAACAATAACTTATACTATTAGAATTATATCCCTCCATTAGCCTAAGCAATATGTTACTAAAATGTTTCTGTAATGTTGTGCATGGAAACTAAATATAATATATAGCGGAAGAACAGTTCTGTGATGTGAGACAATTTTAAGCTATATATCGTTTTGCAGTGCATGTTAGTTACTGAAGGCTAGCCTTGTGTGGAGGTACTACTGAATGGACAAGCACATATCTCGGAGTTGTGTAGCCTAACCCCTCGTGACCCCTGACCTGCCCTGTGTATAACGATGGTGCCAGTCTCTGATGTGCTACATGGACCTTTTTTTGCACTGTTAACAATGCCATGCCCCACCATGCTGGGCACCAGAAACACTGTGTAAGATGTAATAAAACTCAATTCAACAAATACCTTACACCCCAA

Function

NR:

description
PREDICTED: calbindin-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K14757 CALB1, CALB; calbindin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593474.2 True 1886 mRNA 0.43 11 21902473 21926314

Neighbor

gene id symbol gene type direction distance location
pmvk pmvk coding downstream 15201 21884781 ~ 21891946 (-)
LOC110513558 LOC106580365 coding downstream 141654 21756657 ~ 21760819 (-)
LOC118946878 NA coding downstream 146763 21744425 ~ 21755710 (-)
LOC118944502 LOC106580547 coding downstream 184142 21716853 ~ 21718331 (-)
LOC110513497 NA coding downstream 282812 21612154 ~ 21619661 (-)
LOC110503903 LOC106605471 coding upstream 10868 21937182 ~ 21949846 (-)
LOC118944504 LOC106605473 coding upstream 113164 22039478 ~ 22040884 (-)
LOC110513791 LOC106580504 coding upstream 117075 22043389 ~ 22051474 (-)
LOC110513818 gbp coding upstream 163542 22089856 ~ 22091328 (-)
LOC110513832 ccne2 coding upstream 368553 22294867 ~ 22302014 (-)
G235200 NA non-coding downstream 13033 21888091 ~ 21889440 (-)
G235165 NA non-coding downstream 96722 21805530 ~ 21805751 (-)
G235145 NA non-coding downstream 113093 21788047 ~ 21789380 (-)
G235052 NA non-coding downstream 269684 21632282 ~ 21632789 (-)
G235229 NA non-coding upstream 16790 21943104 ~ 21943891 (-)
G235235 NA non-coding upstream 25463 21951777 ~ 21952115 (-)
G235236 NA non-coding upstream 25920 21952234 ~ 21952452 (-)
G235274 NA non-coding upstream 80591 22006905 ~ 22007104 (-)
G235276 NA non-coding upstream 83404 22009718 ~ 22010013 (-)
G235092 LOC100194668 other downstream 159062 21738845 ~ 21743411 (-)
G234621 NA other downstream 403641 21498408 ~ 21498832 (-)
G234600 NA other downstream 432528 21469661 ~ 21469945 (-)
LOC110513321 LOC106580205 other downstream 446757 21438546 ~ 21455972 (-)
G235881 NA other upstream 647519 22573833 ~ 22574989 (-)
G237047 NA other upstream 1230795 23157109 ~ 23189031 (-)
LOC110514600 ensa other upstream 1845210 23771511 ~ 23780158 (-)
G237657 LOC106605316 other upstream 2254242 24180556 ~ 24183964 (-)
G237832 NA other upstream 2594905 24521219 ~ 24521544 (-)

Expression


Co-expression Network