LOC118944503


Basic Information

Item Value
gene id LOC118944503
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22010898 ~ 22012458 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039841.1
tatatatacacatacacacacatgtacagtacatatacataaACATATTCACAGGACACTCAACTTATCTCTTATGTTTTTCCCCACATCAGATATGCAGGTGACATTTCCACCTGGATGACAGCACATAATCAGCAAGACGGAGATGCTCTTCATCCGAGGGAATGCCTGCCCATTCACAGATGTTAGATGATCACATGTCATTTACATTCCAGCCCTTATCAGCTCCAGATTTGACTACTTCAACTCACACCCTGCTGGAATCCCTGCATTCTCAGATTCCCCTATGTTATTAATCTCTATATTGTAATCAATAAAGTGTTTCAAAATGCTGTACTTTTATTAACATATAATGTTCAGATCATTcctgagagagaaggggtgtaatatCTCCTGATGGGCGTGTGGTACTCTTTCTCACCCATGCCAACAAGATGTTACTTCTTGTGGGGTCTTTGCCTTGAAAGTAAGTATGAGAGTATAAGTAATGTACAATTAACCTACTGAAAGTATACTGACTAAAAGGCAAAACAGAGCTGTCAAATTATATTATAGCTGTGTCATTGTATCCTTCCAAATTATAATCTTAGGTGTAACATAATTTTGTTGGGGAAAACTGAAATGCCCATCAAACTTTTTTCCCCAGTTTGCTGAATTTGTTCTGAAAGAGGAGTCGATTGTCTTTTCAAATACGGACAAAGATTTTAACATCATGAGAGAAGAAATAGCAGTCACTCTCCTCCAAAACACTGATGACCTGAGCCAACTGTGCCACTTCTGTGGGGAGGTGGACAATAATGAGGAAGACACTATCTGGATTGGTTGTGACCGCTGCCCACGATGGTTCCACCAGACCTGTATGAAAACCATCCTATCATGGAGGATTATGTCTGCGCTGCCTGTCAGGACTAGGTTAGGCTTGAGTTCCAGGCGACGGTATCACCtggaaaactttccataaaaagtgGAATAAATGTTCAGTCGAGCTGTTGTAGCTTTCCAATATTTTTTATGTTATTTATTGTCTTTTTATATTTGATTTACTGTCATTTTATATTTAATTATGCAAATATCCAAATTAGAGGtagaccgattaatcggcatggccgatttcaaggtttcataacaatcgg
>TU268502
atgacaataataatagaaattaaaataataaatatatatacacatacacacacatgtacagtacatatacataaACATATTCACAGGACACTCAACTTATCTCTTATGTTTTTCCCCACATCAGATATGCAGGTGACATTTCCACCTGGATGACAGCACATAATCAGCAAGACGGAGATGCTCTTCATCCGAGGGAATGCCTGCCCATTCACAGATGTTAGATGATCACATGTCATTTACATTCCAGCCCTTATCAGCTCCAGATTTGACTACTTCAACTCACACCCTGCTGGAATCCCTGCATTCTCAGATTCCCCTATGTTATTAATCTCTATATTGTAATCAATAAAGTGTTTCAAAATGCTGTA
>TU268505
aaggggtgtaatatCTCCTGATGGGCGTGTGGTACTCTTTCTCACCCATGCCAACAAGATGTTACTTCTTGTGGGGTCTTTGCCTTGAAATTTGCTGAATTTGTTCTGAAAGAGGAGTCGATTGTCTTTTCAAATACGGACAAAGATTTTAACATCATGAGAGAAGAAATAGCAGTCACTCTCCTCCAAAACACTGATGACCTGAGCCAACTGTGCCACTTCTGTGGGGAGGTGGACAATAATGAGGAAGACACTATCTGGGTAATTGCTTGTTCACTTCTAAAGGCACATTTTTAGGAGTACGAATTTGTATAAGCAGTAATATTTCTGGAGGTAGTATCATCCACTTTCTC

Function

NR:

description
uncharacterized protein LOC111195773

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039841.1 False 1133 mRNA 0.39 3 22010930 22012458
TU268502 False 368 lncRNA 0.42 1 22010898 22011265
TU268505 True 353 lncRNA 0.55 3 22011306 22012064

Neighbor

gene id symbol gene type direction distance location
LOC110513748 decr1 coding upstream 116939 21889013 ~ 21893991 (+)
LOC110513633 LOC106580396 coding upstream 126162 21857318 ~ 21884768 (+)
LOC110513614 LOC106580392 coding upstream 155775 21846132 ~ 21855155 (+)
arhgef2 LOC106605464 coding upstream 165342 21790333 ~ 21845588 (+)
LOC110513574 LOC106580380 coding upstream 221556 21773668 ~ 21789374 (+)
kiaa0319 LOC106580477 coding downstream 5121 22017579 ~ 22037490 (+)
LOC118947026 LOC106605474 coding downstream 39077 22051535 ~ 22057256 (+)
LOC110503910 LOC106580557 coding downstream 45026 22057484 ~ 22068080 (+)
LOC118944657 LOC106580616 coding downstream 143889 22156347 ~ 22224887 (+)
LOC110503919 LOC106605377 coding downstream 215170 22227628 ~ 22292941 (+)
G234855 NA non-coding upstream 57617 21952571 ~ 21953313 (+)
G234847 NA non-coding upstream 66537 21944146 ~ 21944393 (+)
G234844 NA non-coding upstream 68830 21941887 ~ 21942100 (+)
G234843 NA non-coding upstream 69212 21941063 ~ 21941718 (+)
G234834 NA non-coding upstream 82764 21927899 ~ 21928166 (+)
G234902 NA non-coding downstream 197 22012655 ~ 22012897 (+)
G234904 NA non-coding downstream 2658 22015116 ~ 22015435 (+)
G234970 NA non-coding downstream 119386 22131844 ~ 22132078 (+)
G235396 NA non-coding downstream 225482 22237940 ~ 22238284 (+)
G234340 LOC106580151 other upstream 723928 21286726 ~ 21287002 (+)
G234322 dcst2 other upstream 746424 21264075 ~ 21264506 (+)
G233545 NA other upstream 1402205 20608293 ~ 20608725 (+)
G233521 LOC106579937 other upstream 1445218 20558776 ~ 20565712 (+)
LOC110512505 LOC106579702 other upstream 2166278 19821356 ~ 19844652 (+)
G235426 LOC106581355 other downstream 292035 22303641 ~ 22304906 (+)
LOC110514034 NA other downstream 448082 22460524 ~ 22472917 (+)
G235571 NA other downstream 660278 22672736 ~ 22698834 (+)

Expression


Co-expression Network