LOC118944504 (LOC106605473)


Basic Information

Item Value
gene id LOC118944504
gene name LOC106605473
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22039478 ~ 22040884 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964179.1
tatattgatcGGGCCTTATTTCTTAAATGTATCATTGGTAAATTGTGGCTGTCTGATTATTAATAACGAGTcattatttatgatgcaaggtgatttgtagatcattAGTCGTCAGTCTGCTGAAATGTCGAACAAGCCCATTGGGTAGCTGATGCAATGTGATTTATAGATTAGTCAGCTTCGCCTTTAAAGTCGACTTGAGACTGAAAGGACCGAACTTTGACAGATGTAAGACTACTAATGATGCAATGCACACATGCCTACATTTCAGGGAAGCTGGTTATAGTTTGCTGGCTCTTATTGGACGCAAGAGAAGATATCCAAGCGCGTGGATTGGCCAGCTAAACATCAATGGCGATGGGAAAGACAGACGATACATGTGTCTGCTCCAACCGCTTCCTGGTCCAGAGTAGGTTCCACGATCACTTCATAGAGAAGTTGGGGAAAGCCATGGACGCAGAGCTCCGTCTGGGCCACGGCTCTGACCCAAACACCACCCAGGGACCCCTCATCAATGTCCGTGCCTCTGAGAAGGTGGAGCACCAGGTAATGGATGCAGTGTCTCGGGGGGCCAAGGtgctaaggggggggggggggggaagcgtCTGGATGGCTCGTTCCATCAGCCCACTCTGCTGGCTGATGTCACCACAGACATGCTGTGTACCAGAGAGGAAACCTTcggtcctctcctccctgtcatcAGGTTTAACGCAGGGAAGGAAGCACTTGCCATTGCCAATGCATCTCATGTGGGTTTAGCAGGTGAGCTAAACAGTATTGTATGCACCTTGCTGTCATGTCTGAAAATCCCTCAaaccttccaaatggacattgaccccaagcatacttccaaagttgtggcaaaatggcttaaggacaacgaagtcaaggtattggagt

Function

NR:

description
succinate-semialdehyde dehydrogenase, mitochondrial-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964179.1 True 903 mRNA 0.48 4 22039478 22040884

Neighbor

gene id symbol gene type direction distance location
LOC110503903 LOC106605471 coding downstream 89632 21937182 ~ 21949846 (-)
LOC110513756 LOC106580458 coding downstream 113164 21902473 ~ 21926314 (-)
pmvk pmvk coding downstream 152206 21884781 ~ 21891946 (-)
LOC110513558 LOC106580365 coding downstream 278659 21756657 ~ 21760819 (-)
LOC118946878 NA coding downstream 283768 21744425 ~ 21755710 (-)
LOC110513791 LOC106580504 coding upstream 2505 22043389 ~ 22051474 (-)
LOC110513818 gbp coding upstream 48972 22089856 ~ 22091328 (-)
LOC110513832 ccne2 coding upstream 253983 22294867 ~ 22302014 (-)
LOC110513844 LOC106581355 coding upstream 265055 22305939 ~ 22317533 (-)
LOC110513910 LOC106605373 coding upstream 283838 22324722 ~ 22336054 (-)
G235283 NA non-coding downstream 22164 22016919 ~ 22017314 (-)
G235279 NA non-coding downstream 25914 22013257 ~ 22013564 (-)
G235278 NA non-coding downstream 26308 22012937 ~ 22013170 (-)
G235276 NA non-coding downstream 29465 22009718 ~ 22010013 (-)
G235274 NA non-coding downstream 32374 22006905 ~ 22007104 (-)
G235312 NA non-coding upstream 51430 22092314 ~ 22095038 (-)
G235750 LOC106580611 non-coding upstream 200140 22241024 ~ 22241932 (-)
G235785 LOC106580611 non-coding upstream 242996 22283880 ~ 22284776 (-)
G235793 NA non-coding upstream 278042 22318926 ~ 22319165 (-)
G235794 NA non-coding upstream 278471 22319355 ~ 22319576 (-)
G235092 LOC100194668 other downstream 296067 21738845 ~ 21743411 (-)
G234621 NA other downstream 540646 21498408 ~ 21498832 (-)
G234600 NA other downstream 569533 21469661 ~ 21469945 (-)
LOC110513321 LOC106580205 other downstream 583762 21438546 ~ 21455972 (-)
G235881 NA other upstream 532949 22573833 ~ 22574989 (-)
G237047 NA other upstream 1116225 23157109 ~ 23189031 (-)
LOC110514600 ensa other upstream 1730640 23771511 ~ 23780158 (-)
G237657 LOC106605316 other upstream 2139672 24180556 ~ 24183964 (-)
G237832 NA other upstream 2480335 24521219 ~ 24521544 (-)

Expression


Co-expression Network