LOC110503910 (LOC106580557)


Basic Information

Item Value
gene id LOC110503910
gene name LOC106580557
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22057484 ~ 22068080 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582547.2
TGGTACAGATATTACAGTGCCTCTGGAAACTGCCACCAAATTGCTTAGATAAATGTTAGTGGGACTGCAGATAAATTAAAAAGTCTCAATCGAACAGTAGTATACTATTGATATAATAACTCTGTAGCCATATGAACTTGAAACTATCATTTTTCTTAGACACTTTACAGATAAACCTGGATCCTGATGTCCTGCATGTCACATAGGACCCATTGTATCCTATTTTATACATATTCTTTCCATGCACATGGGTGAACAATGTGAGAAATGCCACATATAGATGGACAGTAATTGCATGTCTGGAGAGCTGTGGATGTGCAGTTACGGCAGACCAAGCCTGTCTCAACGCTTCCATAATTGCCATGGGAAGTGAAGAAAAGATCTGATGGCTCTCTGGGGTGAACGGAAGGTGAACTGTGACAAGTAAAAACGAAATGGGAATTCAGGAACCTACCATTTAAAAATAGTGTCCTGGATCTGTACAAATAAACGTGGATATTTTAAGAACCAAAATCCTACAAAAAAAGTACTTTGACGTTTCTCCCCTGCCTTGGCTTCCTCTCATTGAACAAGGAAGGAAAATAAATCTCATtacagaactgaaatggcaggtAAAAATGTCAATTGAGGACCCTTGACTTTGTCTGATTCAAAGCATGTGGTTGGGGGATTTTTGCAAATACAAATGAGCTGAGAACATACAATGGTGCATGTAGATGAGCCCTTTTTCAGCGACATGTTTGAATGGACCAAAATATGTGTTGCAGTTAGAAAACCTTTGAGATGGGACACATTTTTTGATGGAACAATTTTGTGAAATTGTCTACAATTCCATCTCTCTGGAAATATCAATCTGCATAACGTAATATCATTGATAAGCCAGAGTTCAAAACTTTCATATGAAATATTTATTTTCATGGTTTCTAATATAAGGTAAATTGGACCCATAATACATTTGCATGCACTATATTCAGAAAAACGCCCCTCCTTGCGAGTGCTCGTTGCTACTCAACATTTTTAAACAGCACCGCGAGCCAAGAGGGTTAGTGCAAACCGGAACCCTTGGGACGTCCATACCATAACTTTATCCCCTACCATTAACCCTTACcattttttatttcaactttaaaGGGGTAGTGACGTCCAAAGGATCCAAGATAGCAAGGACAGAGTTAAGAGGGTCTAGTGCACGGTGCGGTGCGCATCTGCGGTCTTAGAGCTGTCTGAAACGCACGGAGTTTTGTCATGTTTTCTTCGAATAACTGGAGCACTTTTTCACTTATGCTCGCAAGGAGATAATAATCATGATCAACATTAGTGTCAAAACACATAACTAACTGGCTGTTTTACGCAGAATATTAAAAGGAACTTGGCTAATGGAGAGGATGGAAAACTCAACTATCCCTTTTATCAAGAGGGAAACTCTCAATATATAGCCAGTCCCACTTCAGGTTTTCCCCTCCACCCCAGGCAGGCCTGTGGCCGCCATGATGAGCAGCTCATCCAGCCCAGCTGAGTTCTCCAGGGACAGGACCTCCCTCCTGTCCATAGACTCTAGCGTCTTCTACAGCGGGCCCCCTCCTGTCTGTGACTACCCACTGGACTTCTTCACCATCAACGTGGGAGGCAGCCGCTACGTTCTCTCCCAGGAGCTGCTGGCATCCCACCCAGAAACCCGTCTGGGCAAGCTGGCCCTGTCCACATGGGACTCTGCCCTGGAGCTCTGTGACGACGCTGACTTGCTGGAGAATGAGTTTTTCTTTGACCGCAGCTCACAGACCTTCCAGTATGTGATAAACTTCTACCGCACAGGCCACCTGCATGTCAGGGAGGAGCTTTGCGTGTTCTCCTTCCTCCAGGAGATTGAGTACTGGGGCATCGACGAGCTCTGCATCGATCCCTGCTGCCGGGAACGCTACTACCGCCGCAAGGAGCTCAAGGAGAGCTTGGACGTGCGGAACGAGGCTGAGGCTGACGAAAGCCAGGACGAAGACTTCAACGGCGCCGCGTGTTCAGATCTCCGGCGGCGCCTGTGGGACCTGCTGGAGAAGCCAGAGTCTTCACGAGCGGCACGCGCCTTCGGCACGCTGTCCATCATCTTCGTGGCGGTGTCCATTGTCAACATTGTGCTCATCTCGCTGGACCTGGGGAATGTGGGTGGGAACGGGATCGGTGACGAGAGTGGGGGCAGTGACGGGGGTACACCTTTCTTCGTGGACGCACTGGAATATGTGTGCGTGGTGTGGTTCACCGGCGAGCTGGTGTTGCGCTTTGTCTCCGTGCGCGACAAGTGCCGCTTCACCCGTAGTGTTCCCAATGTGATCGACCTGCTAGCCATCCTGCCCTTCTATGTGACTCTGGCAGTTGAGAGTCTGCACGGTGGCTCTACTGAGCTGGAGAACATGGGCCGCGTGGTGCAGGTGCTCAGGCTCATGAGGTCCCTCCGCATGCTCAAACTAGGACGCCACTCCACAGGCCTCAAGTCCCTGGGCCTGACCATCACCCAGTGCTACGAGGAGGTGGGTCTCTTGCTCCTCTTCCTCTCCGTGGGAATCTCCATCTTCGCCACGGTGGAGTTCGCCCTGGAGCATGACATCCCCGGCACCACCTTCAGCAGCGTGCCCTGTGCCTGGTGGTGGGCCACCACCTCCATGACCACGGTGGGCTACGGAGACATCCGCCCCGACACCACCCTGGGCAAGGTGCTGGCCTTTCTCTGCATCTTGTCTGGCATCCTGATCTTGGCACTGCCCATCGCTATCATCAACGACCGCTTCTCTGCCTGCTACTTCACTCTCAAGATGAAGGAGGCGGCGCTGCGGCACGGGGAGGCCCTCAAGAGGCTGGCGCGGGGTTCGCTGGGTGACTCGGAGGTGGGTGGGGCagcaaggggaggaggggtgaacCTGAGGGATGTTTATGCCAGGAGTGTGATGGAGATGCTGAGgctgaaagggagggagagggccaGCACACGGAGTAGTGGAGGGGGTGAGCTCTGGTGGTAATGTGGAAGATGGAGCACAAGAGCGGCTGTGGAGAAAAAGCTATGGAAGAGCGGCTGTGGAGAAAAAGCTATGGAAGAGCGGCTGTGGAGAAAAAGCTATGGAAGAGCGGCTGTGGAGAAAAAGCTATGGAAGAGAGGCTGTGGAGAA
>TU268551
ACCCTTGGGACGTCCATACCATAACTTTATCCCCTACCATTAACCCTTACcattttttatttcaactttaaaGGGGTAGTGACGTCCAAAGGATCCAAGATAGCAAGGACAGAGTTAAGAGGGTCTAGTGCACGGTGCGGTGCGCATCTGCGGTCTTAGAGCTGTCTGAAACGCACGGAGTTTTGTCATGTTTTCTTCGAATAACTGGAGCACTTTTTCACTTATGCTCGCAAGGAGATAATAATCATGATCAACATTAGTGTCAAAACACATAACTAACTGGCTGTTTTACGCAGAATATTAAAAGGAACTTGGCTAATGGAGAGGATGGAAAACTCAACTATCCCTTTTATCAAGAGGGAAACTCTCAATATATAGCCAGGCCTCAAGTCCCTGGGCCTGACCATCACCCAGTGCTACGAGGAGGTGGGTCTCTTGCTCCTCTTCCTCTCCGTGGGAATCTCCATCTTCGCCACGGTGGAGTTCGCCCTGGAGCATGACATCCCCGGCACCACCTTCAGCAGCGTGCCCTGTGCCTGGTGGTGGGCCACCACCTCCATGACCACGGTGGGCTACGGAGACATCCGCCCCGACACCACCCTGGGCAAGGTGCTGGCCTTTCTCTGCATCTTGTCTGGCATCCTGATCTTGGCACTGCCCATCGCTATCATCAACGACCGCTTCTCTGCCTGCTACTTCACTCTCAAGATGAAGGAGGCGGCGCTGCGGCACGGGGAGGCCCTCAAGAGGCTGGCGCGGGGTTCGCTGGGTGACTCGGAGGTGGGTGGGGCagcaaggggaggaggggtgaacCTGAGGGATGTTTATGCCAGGAGTGTGATGGAGATGCTGAGgctgaaagggagggagagggccaGCACACGGAGTAGTGGAGGGGGTGAGCTCTGGTGGTAATGTGGAAGATGGAGCACAAGAGCGGCTGTGGAGAAAAAGCTATGGAAGAGCGGCTGTGGAGAAAAAGCTATGGAAGAGCGGCTGTGGAGAAAAAGCTATGGAAGAGCGGCTGTGGAGAAAAAGCTATGGAAGAGAGGCTGTGGAGAAAAAGCTATGGAAGAGCGGCTGTGGAGAAAAAGCTATGGAAGAGCGGCTGTGGAGAAAAAGCTATGGAAGAGCGGCTGTGGAGAAAAAGCTATGGAAGAGCGGCTGTGGAGAAAAAGCTATGGAAGAGGCTGTGGATAAAAAGCTATGGAAGAGCGGCTGTGGAGAAAAAGCTATGGAAGAGCGGCTGTGGAGAAAAAGCTATGGAAGAGCGG
>TU268548
CGGTGCGCATCTGCGGTCTTAGAGCTGTCTGAAACGCACGGAGTTTTGTCATGTTTTCTTCGAATAACTGGAGCACTTTTTCACTTATGCTCGCAAGGAGATAATAATCATGATCAACATTAGTGTCAAAACACATAACTAACTGGCTGTTTTACGCAGAATATTAAAAGGAACTTGGCTAATGGAGAGGATGGAAAACTCAACTATCCCTTTTATCAAGAGGGAAACTCTCAATATATAGCCAGGCCTCAAGTCCCTGGGCCTGACCATCACCCAGTGCTACGAGGAGGTGGGTCTCTTGCTCCTCTTCCTCTCCGTGGGAATCTCCATCTTCGCCACGGTGGAGTTCGCCCTGGAGCATGACATCCCCGGCACCACCTTCAGCAGCGTGCCCTGTGCCTGGTGGTGGGCCACCACCTCCATGACCACGGTGGGCTACGGAGACATCCGCCCCGACACCACCCTGGGCAAGGTGCTGGCCTTTCTCTGCATCTTGTCTGGCATCCTGATCTTGGCACTGCCCATCGCTATCATCAACGACCGCTTCTCTGCCTGCTACTTCACTCTCAAGATGAAGGAGGCGGCGCTGCGGCACGGGGAGGCCCTCAAGAGGCTGGCGCGGGGTTCGCTGGGTGACTCGGAGGTGGGTGGGGCagcaaggggaggaggggtgaacCTGAGGGATGTTTATGCCAGGAGTGTGATGGAGATGCTGAGgctgaaagggagggagagggccaGCACACGGAGTAGTGGAGGGGGTGAGCTCTGGTGGTAATGTGGAAGATGGAGCACAAGAGCGGCTGTGGAGAAAAAGCTATGGAAGAGCGGCTGTGGAGAAAAAGCTATGGAAGAGCGGCTGTGGAGAAAAAGCTATGGAAGAGCGGCTGTGGAGAAAAAGCTATGGAAGAGAGGCTGTGGAGAAAAAGCTATGGAAGAGCGGCTGTGGAGAAAAAGCTATGGAAGAGCGGCTGTGGAGAAAAAGCTATGGAAGAGCGGCTGTGGAGAAAAAGCTATGGAAGAGCGGCTGTGGAGAAAAAGCTATGGAAGAGGCTGTGGATAAAAAGCTATGGAAGAGCGGCTGTGGAGAAAAAGCTATGGAAGAGCGGCTGTGGAGAAAAAGCTATGGAAGAGCGG
>TU268550
CGGTGCGCATCTGCGGTCTTAGAGCTGTCTGAAACGCACGGAGTTTTGTCATGTTTTCTTCGAATAACTGGAGCACTTTTTCACTTATGCTCGCAAGGAGATAATAATCATGATCAACATTAGTGTCAAAACACATAACTAACTGGCTGTTTTACGCAGAATATTAAAAGGAACTTGGCTAATGGAGAGGATGGAAAACTCAACTATCCCTTTTATCAAGAGGGAAACTCTCAATATATAGCCAGGCCTCAAGTCCCTGGGCCTGACCATCACCCAGTGCTACGAGGAGGTGGGTCTCTTGCTCCTCTTCCTCTCCGTGGGAATCTCCATCTTCGCCACGGTGGAGTTCGCCCTGGAGCATGACATCCCCGGCACCACCTTCAGCAGCGTGCCCTGTGCCTGGTGGTGGGCCACCACCTCCATGACCACGGTGGGCTACGGAGACATCCGCCCCGACACCACCCTGGGCAAGGTGCTGGCCTTTCTCTGCATCTTGTCTGGCATCCTGATCTTGGCACTGCCCATCGCTATCAT

Function

NR:

description
potassium voltage-gated channel subfamily V member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582547.2 False 3155 mRNA 0.50 3 22057484 22067868
TU268551 False 1274 TUCP 0.59 2 22058542 22068080
TU268548 False 1137 TUCP 0.38 2 22058679 22068080
TU268550 True 534 lncRNA 0.42 2 22058679 22067477

Neighbor

gene id symbol gene type direction distance location
LOC118947026 LOC106605474 coding upstream 228 22051535 ~ 22057256 (+)
kiaa0319 LOC106580477 coding upstream 19994 22017579 ~ 22037490 (+)
LOC118944503 NA coding upstream 45026 22010898 ~ 22012458 (+)
LOC110513748 decr1 coding upstream 163493 21889013 ~ 21893991 (+)
LOC110513633 LOC106580396 coding upstream 172716 21857318 ~ 21884768 (+)
LOC118944657 LOC106580616 coding downstream 88479 22156347 ~ 22224887 (+)
LOC110503919 LOC106605377 coding downstream 159760 22227628 ~ 22292941 (+)
LOC110513878 LOC106581338 coding downstream 273876 22341744 ~ 22357183 (+)
LOC110513938 plekhf2 coding downstream 308893 22376761 ~ 22404817 (+)
LOC110513964 LOC106605368 coding downstream 362753 22430621 ~ 22441465 (+)
G234904 NA non-coding upstream 42049 22015116 ~ 22015435 (+)
G234902 NA non-coding upstream 44587 22012655 ~ 22012897 (+)
G234855 NA non-coding upstream 104171 21952571 ~ 21953313 (+)
G234847 NA non-coding upstream 113091 21944146 ~ 21944393 (+)
G234970 NA non-coding downstream 63976 22131844 ~ 22132078 (+)
G235396 NA non-coding downstream 170072 22237940 ~ 22238284 (+)
G235426 LOC106581355 non-coding downstream 235773 22303641 ~ 22304906 (+)
G235428 NA non-coding downstream 250668 22318536 ~ 22318737 (+)
G234340 LOC106580151 other upstream 770482 21286726 ~ 21287002 (+)
G234322 dcst2 other upstream 792978 21264075 ~ 21264506 (+)
G233545 NA other upstream 1448759 20608293 ~ 20608725 (+)
G233521 LOC106579937 other upstream 1491772 20558776 ~ 20565712 (+)
LOC110514034 NA other downstream 392672 22460524 ~ 22472917 (+)
G235571 NA other downstream 604868 22672736 ~ 22698834 (+)
G235569 NA other downstream 605657 22673525 ~ 22685509 (+)
G236271 LOC106581124 other downstream 1081284 23144516 ~ 23191853 (+)

Expression


Co-expression Network