LOC118944657 (LOC106580616)


Basic Information

Item Value
gene id LOC118944657
gene name LOC106580616
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22156347 ~ 22224887 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964683.1
TGATGCTTCACTGAATAAGCTGGAAGCGAATTTGTCATTTTGGCGCTGTTCTTTGAGGGACTGCTATTTTTTCAGTGCTGAAACGTTGCACTTTTGGGGACATTTACACCATATATCTACTCACCTAGCATTAATAACAATATTTGTTCGATTATTTATGCCTCAAGAAACTTTTATGTTGGACTAGAGTGACAACACTGATTTGATGGAAACATGACGGGAGCTACAAACGGAACGGTAGCCCTGAAGACATTTTTGCTTGTCGCATTGGTTTCATTTTCAACGGGGAATTCAAAGCTGCCTGTGTATTATGGACAAATTGTGGAGAACTCGCACGCTGGAACAATGGTGGATGGGGTCGCTTTACCGGTTGGAAACAACTGTCATGTTTCGGAACTGGACATTGCTTTGGAAGGGAAGGACGCATCAGATTTTCGTTTGGTTTACCTTCACGGAGAACAGCATCTTATTTTGAAATCCACAGAAACTTTGGACAGAGAGTTTATAGCAGTGTACGATTTGATGGTTGTGCTTTCTGGCTGTTTGAATAGTGCCGTGGTGATTAAAATAGAGGTGCTTGATTCAAACGACAACATACCCCGGTTCATCAAGGAAAACGAAAGGGTAAAAGTTGATGAATTGACCCCTATCGGTTCCGAATTGGTCCGTTTTTTTGCAAAGGATTCCGACGTTGGAAAGAATGGCCGGGTCACTTATTACGCATCTCCAAATTGCCAACATGTCTACGTAGTTCCCCAAACCGGACAGGTAATGCTGGTCAGTTCTCTCATTGGTATCGTGAACCTAACAGTCAGTATTTACGCTCAAGATAATGGAGATGTCGCATTGATAAGTAAGCCGGTGACACTTCACCTTGATGTGCAGAGACCTGCTGTCTCGAAGATTAGGAGGCCCCGAGCGGTCTCTGAGGAGCTGTTCTACACAGTGACCGTCTCAGAGGATGTCAAAGTCGGTGACATGATATTCACGGTGCCTGACCAGAAGTTTGAAAAGAAGTGGTTCGAGGTAATATCAGAGGCGGACTCCCCGGTTCAGATCGAGAGGGACTCGGGTCGTTTGTATCTCGCGCACAGACTGAAGTCCCCCGCGGAGGTCATGGTCAAAATCCAAAACCTCAGAGGTGATGAGTGGTACCTCTGCAGGCTGAGCCTGAGTGTGCCCACCCTGGCAGACCTGCAGTGGGGCATGTTCCCCCAGCCCTACCTGGGCGCAGTGGGACCTGACGCCGCACCAGGCTCTGTGGTCTACCGCCTCACCGCCCGCCAACGAGATGGCACAATAGGAAACGCCCACTTTCTGCTACTGGATGGCGGCGAGGATTCGTTTGAGGTGGACCGCAGCTCTGGGGAGGTCAGGACCACCGGCCGACCCCTGACCCCCAGCAGGGAGTACATGCTGAGGGTGCAGGCGGTGGACACGCAGGGCAGGAAGGGTCCCCCTGCAACAGTAGCTATTCTGGCAGGGTTCCGCCCCCCACAGTTCACCAACGCCTCCTACACCCTGAGTGTCCCAGAGAACACGCCCGTGGGCCAAGCGTGA

Function

NR:

description
protocadherin Fat 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964683.1 True 1560 mRNA 0.50 3 22156347 22224887

Neighbor

gene id symbol gene type direction distance location
LOC110503910 LOC106580557 coding upstream 88479 22057484 ~ 22068080 (+)
LOC118947026 LOC106605474 coding upstream 99091 22051535 ~ 22057256 (+)
kiaa0319 LOC106580477 coding upstream 118857 22017579 ~ 22037490 (+)
LOC118944503 NA coding upstream 143889 22010898 ~ 22012458 (+)
LOC110513748 decr1 coding upstream 262356 21889013 ~ 21893991 (+)
LOC110503919 LOC106605377 coding downstream 2741 22227628 ~ 22292941 (+)
LOC110513878 LOC106581338 coding downstream 116857 22341744 ~ 22357183 (+)
LOC110513938 plekhf2 coding downstream 151874 22376761 ~ 22404817 (+)
LOC110513964 LOC106605368 coding downstream 205734 22430621 ~ 22441465 (+)
LOC110514034 NA coding downstream 235637 22460524 ~ 22472917 (+)
G234970 NA non-coding upstream 24269 22131844 ~ 22132078 (+)
G234904 NA non-coding upstream 140912 22015116 ~ 22015435 (+)
G234902 NA non-coding upstream 143450 22012655 ~ 22012897 (+)
G235396 NA non-coding downstream 13053 22237940 ~ 22238284 (+)
G235426 LOC106581355 non-coding downstream 78754 22303641 ~ 22304906 (+)
G235428 NA non-coding downstream 93649 22318536 ~ 22318737 (+)
G235429 NA non-coding downstream 94035 22318922 ~ 22319223 (+)
G234340 LOC106580151 other upstream 869345 21286726 ~ 21287002 (+)
G234322 dcst2 other upstream 891841 21264075 ~ 21264506 (+)
G233545 NA other upstream 1547622 20608293 ~ 20608725 (+)
G235571 NA other downstream 447849 22672736 ~ 22698834 (+)
G235569 NA other downstream 448638 22673525 ~ 22685509 (+)
G236271 LOC106581124 other downstream 924265 23144516 ~ 23191853 (+)

Expression


Co-expression Network