XLOC_021624 (emd)


Basic Information

Item Value
gene id XLOC_021624
gene name emd
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 19813677 ~ 19822223 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042918
GAAGTGATGTGTTTCTCCTCCTCCAGCGCGACCAGCGACACGCCCAGCTCAGGAAAGCGCCTTTTTAACGTTCTGGAATCATTTACGATATGTCGTCATTAAGTGTGAAATCGGATAAAGAGATCTGCCAGCTGCTGGATGAATATGGCATCAAACATGGACCCATAGTAGAATCCACAAGGAAGCTCtatgaaaaaaaactgaatgaggCCATGGCCAAAAAAACCAAGCCTTCCTCACCTGACAAAACATACTACAGAGAAGAACAGGAAGAAGTGGAATATGTTACCTATCATCAGCCCCAGCAACAAACAAGACACGAAGTATATGGTGATGTCACAAGGAGATCAAAGGCCAGCGATTCAGATTTTGCCCACGATGTGGGGTCAAAGTTGTCAGCCTACAGAGAAGATGTTGACTATACCAACgaGCCTGTCACCCGCCAGTCTCACTCAGCCTATCAGAGCTCTTCTCGTCCACCAAGCTCTAAACCCGTCCAGAGTGCAGAGAGCACAAAGTCTGCAGGTGTGCCGGCGTGGCTGCGCATCCTGGTGTTTCTCATCATCGCTGCCTTTTTGTATTATGTATACACATCTATGGAGCCAGCAGAAGAGACGCCATTCAAAACCATTCAGTAGAACATATTATAGTCATCAGCCCCAACCAAAACTCACTTATTTAAACAACCACCAAAAATAGAGCTTGATCTAACGGCAAACCATGTTCTCTGATAGAGTTGTTCTGCCACCACCAATTGGTGTAATATGTTAGTCAAATATTTGTCTTGCAGATTTTTATAAAGAAACAGAAACGTATGAAAGGTGAATTTTTATAATGACTGGGgcattttcaacattttagagcttattttcttttaaaattgaaTGTTGACATATTTACGCTGTGTCCGTATGTTAGAGGCTTATGTTCTTGGGATATTCTGTAAAGCTTTATTTGGTATTCTGcctctgtttgctttttttttcttggtttaaACCGTTTTTTCCCCCTATGATTTTTAGGGTGCTGAATTCTTCTGAAGCAGTGCAGATTTAATACGCACATTGTGCTATTCTATGTACATTAAAATGCTTATGTAGAGGGAggcacaagcacgcacacactaCATTTACATTAGTAGTAACATAAGTGCCTTTGTTAcgattgttatttaaaaaaagtataaaagaaatatattgtataaactgaattcatttttgttaaaaaaaaaaccctaagtATTATCCTCTCGACAATATTGATAACACTATTAGAATGCATTGCTCattttttgtttactgttttgttttaatagtttCCCATAAAAGTAGCTATGCTACTGATATATTAATATTGAGTTTTCGTTAGATATTGATGTTTTATTGTGTGAATTACGGAAAGTAAATGaacaaaatgtttaaacattCGTCAAATTGGAAAATGACTAACAATTTAAACCCATGCAAACCACTTGTAAAATATCTGCTTACCTTGGCtggcatttgttttttttcctgtatGCATCAGCTTGAAACTCTTTTTGAgcaaaaataaagttgttttaaG
>TCONS_00042919
CTCCTCCAGCGCGACCAGCGACACGCCCAGCTCAGGAAAGCGCCTTTTTAACGTTCTGGAATCATTTACGATATGTCGTCATTAAGTGTGAAATCGGATAAAGAGATCTGCCAGCTGCTGGATGAATATGGCATCAAACATGGACCCATAGTAGAATCCACAAGGAAGCTCtatgaaaaaaaactgaatgaggCCATGGCCAAAAAAACCAAGCCTTCCTCACCTGACAAAACATACTACAGAGAAGAACAGGAAGAAGTGGAATATGTTACCTATCATCAGCCCCAACAAACAAGACACGAAGTATATGGTGATGTCACAAGGAGATCAAAGGCCAGCGATTCAGATTTTGCCCACGATGTGGGGTCAAAGTTGTCAGCCTACAGAGAAGATGTTGACTATACCAACgaGCCTGTCACCCGCCAGTCTCACTCAGCCTATCAGAGCTCTTCTCGTCCACCAAGCTCTAAACCCGTCCAGAGTGCAGAGAGCACAAAGTCTGCAGGTGTGCCGGCGTGGCTGCGCATCCTGGTGTTTCTCATCATCGCTGCCTTTTTGTATTATGTATACACATCTATGGAGCCAGCAGAAGAGACGCCATTCAAAACCATTCAGTAGAACATATTATAGTCATCAGCCCCAACCAAAACTCACTTATTTAAACAACCACCAAAAATAGAGCTTGATCTAACGGCAAACCATGTTCTCTGATAGAGTTGTTCTGCCACCACCAATTGGTGTAATATGTTAGTCAAATATTTGTCTTGCAGATTTTTATAAAGAAACAGAAACGTATGAAAGGTGAATTTTTATAATGACTGGGgcattttcaacattttagagcttattttcttttaaaattgaaT
>TCONS_00042920
CGACCAGCGACACGCCCAGCTCAGGAAAGCGCCTTTTTAACGTTCTGGAATCATTTACGATATGTCGTCATTAAGTGTGAAATCGGATAAAGAGATCTGCCAGCTGCTGGATGAATATGGCATCAAACATGGACCCATAGTAGAATCCACAAGGAAGCTCtatgaaaaaaaactgaatgaggCCATGGCCAAAAAAACCAAGCCTTCCTCACCTGACAAAACATACTACAGAGAAGAACAGGAAGAAGTGGAATATGTTACCTATCATCAGCCCCAGCAACAAACAAGACACGAAGTATATGGTGATGTcgcggacgtgaatgcatctgagtgttctgatatgtgaaaggggctattatgtATGTCCTGCACAAACAATGTCCCTCTCCTATGATTACAGCACAAGGAGATCAAAGGCCAGCGATTCAGATTTTGCCCACGATGTGGGGTCAAAGTTGTCAGCCTACAGAGAAGATGTTGACTATACCAACgaGCCTGTCACCCGCCAGTCTCACTCAGCCTATCAGAGCTCTTCTCGTCCACCAAGCTCTAAACCCGTCCAGAGTGCAGAGAGCACAAAGTCTGCAGGTGTGCCGGCGTGGCTGCGCATCCTGGTGTTTCTCATCATCGCTGCCTTTTTGTATTATGTATACACATCTATGGAGCCAGCAGAAGAGACGCCATTCAAAACCATTCAGTAGAACATATTATAGTCATCAGCCCCAACCAAAACTCACTTATTTAAACAACCACCAAAAATAGAGCTTGATCTAACGGCAAACCATGTTCTCTGATAGAGTTGTTCTGCCACCACCAATTGGTGTAATATGTTAGTCAAATATTTGTCTTGCAGATTTTTATAAAGAAACAGAAACGTATGAAAGGTGAATTTTTATAATGACTGGGgcattttcaacattttagagcttattttcttttaaaattgaaTGTTGACATATTTACGCTGTGTCCGTATGTTAGAGGCTTATGTTCTTGGGATATTCTGTAAAGCTTTATTTGGTATTCTGcctctgtttgctttttttttcttggtttaaACCGTTTTTTCCCCCTATGATTTTTAGGGTGCTGAATTCTTCTGAAGCAGTGCAGATTTAATACGCACATTGTGCTATTCTATGT
>TCONS_00042921
GCGACACGCCCAGCTCAGGAAAGCGCCTTTTTAACGTTCTGGAATCATTTACGATATGTCGTCATTAAGTGTGAAATCGGATAAAGAGATCTGCCAGCTGCTGGATGAATATGGCATCAAACATGGACCCATAGTAGAATCCACAAGGAAGCTCtatgaaaaaaaactgaatgaggCCATGGCCAAAAAAACCAAGCCTTCCTCACCTGACAAAACATACTACAGAGAAGAACAGGAAGAAGTGGAATATGTTACCTATCATCAGCCCCAGCAACAAACAAGACACGAAGTATATGGTGATGTGTGagtaactttatttaattttttcgcAATACTAATATCTGTCAGtatcccctttcacacagtgataccggtaaatatccagaaaatttccataacgactttaccggtaaataaaaacaaaaaggtgtTCACACGGGCATGGACATTGCCttatttttccggaaaagaccattcacacattccAAAATGGCAgtttctgacatcattaaccaaaaatgacctataaacggctgcacttgtaaacatagaaggggcCGACCTTTTCtcgatggtttcacttttatctttagcattcatgcagctgctttgtgagACATCTAAAGGCAGAAGCACGAaccacagctaaatgtttacacacttgactacattacaaattctgtggatggataagtattgtcaACGACTTATataaaacatatggaggaacactttcacatatTGACATgctcataatatgtgtgtgtgctgacgctcaccggctgcttcacgtgcacatgtgaagcaactgaagcagagcttgaaggtaaacaaacagcggtttatcataaacacCTTATCGGtaattacacagttggcattaagaa
>TCONS_00042922
CCCAGCTCAGGAAAGCGCCTTTTTAACGTTCTGGAATCATTTACGATATGTCGTCATTAAGTGTGAAATCGGATAAAGAGATCTGCCAGCTGCTGGATGAATATGGCATCAAACATGGACCCATAAATCCACAAGGAAGCTCtatgaaaaaaaactgaatgaggCCATGGCCAAAAAAACCAAGCCTTCCTCACCTGACAAAACATACTACAGAGAAGAACAGGAAGAAGTGGAATATGTTACCTATCATCAGCCCCAGCAACAAACAAGACACGAAGTATATGGTGATGTCACAAGGAGATCAAAGGCCAGCGATTCAGATTTTGCCCACGATGTGGGGTCAAAGTTGTCAGCCTACAGAGAAGATGTTGACTATACCAACgaGCCTGTCACCCGCCAGTCTCACTCAGCCTATCAGAGCTCTTCTCGTCCACCAAGCTCTAAACCCGTCCAGAGTGCAGAGAGCACAAAGTCTGCAGGTGTGCCGGCGTGGCTGCGCATCCTGGTGTTTCTCATCATCGCTGCCTTTTTGTATTATGTATACACATCTATGGAGCCAGCAGAAGAGACGCCATTCAAAACCATTCAGTAGAACATATTATAGTCATCAGCCCCAACCAAAACTCACTTATTTAAACAACCACCAAAAATAGAGCTTGATCTAACGGCAAACCATGTTCTCTGATAGAGTTGTTCTGCCACCACCAATTGGTGTAATATGTTAGTCAAATATTTGTCTTGCAGATTTTTATAAAGAAAC
>TCONS_00042923
ATGTCGTCATTAAGTGTGAAATCGGATAAAGAGATCTGCCAGCTGCTGGATGAATATGGCATCAAACATGGACCCATAGTAGAATCCACAAGGAAGCTCtatgaaaaaaaactgaatgaggCCATGGCCAAAAAAACCAAGCCTTCCTCACCTGACAAAACATACTACAGAGAAGAACAGGAAGAAGTGGAATATGTTACCTATCATCAGCCCCAGCAACAAACAAGACACGAAGTATATGGTGATGTcgcggacgtgaatgcatctgagtgttctgatatgtga

Function

symbol description
emd Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in heart. Human ortholog(s) of this gene implicated in Emery-Dreifuss muscular dystrophy; X-linked Emery-Dreifuss muscular dystrophy 1; and dilated cardiomyopathy. Orthologous to human EMD (emerin).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko05410 Hypertrophic cardiomyopathy
ko05412 Arrhythmogenic right ventricular cardiomyopathy
ko05414 Dilated cardiomyopathy

ZFIN:

id description
ZDB-GENE-070501-2 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in heart. Human ortholog(s) of this gene implicated in Emery-Dreifuss muscular dystrophy; X-linked Emery-Dreifuss muscular dystrophy 1; and dilated cardiomyopathy. Orthologous to human EMD (emerin).

Ensembl:

ensembl_id ENSDARG00000095774

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042918 False 1566 mRNA 0.38 8 19813677 19822223
TCONS_00042919 False 866 mRNA 0.43 8 19813694 19821543
TCONS_00042920 False 1143 nonsense_mediated_decay 0.42 8 19813705 19821737
TCONS_00042921 False 887 lncRNA 0.40 5 19813711 19816370
TCONS_00042922 False 760 nonsense_mediated_decay 0.44 8 19813719 19821463
TCONS_00042923 True 285 mRNA 0.42 5 19814371 19816492

Neighbor

gene id symbol gene type direction distance location
XLOC_021623 flna coding upstream 4650 19759128 ~ 19809027 (+)
XLOC_021622 dnase1l1 coding upstream 101689 19701587 ~ 19711988 (+)
XLOC_021621 si:dkey-93l1.6 coding upstream 117701 19691146 ~ 19695976 (+)
XLOC_021620 smim4 coding upstream 135744 19675780 ~ 19677933 (+)
XLOC_021619 kctd6b coding upstream 139908 19670085 ~ 19673769 (+)
XLOC_021625 cfap126 coding downstream 154897 19977120 ~ 19981813 (+)
XLOC_021626 tnnc1b coding downstream 287863 20110086 ~ 20112596 (+)
XLOC_021627 AL953864.1 coding downstream 365402 20187625 ~ 20187739 (+)
XLOC_021628 NA coding downstream 523087 20345310 ~ 20361426 (+)
XLOC_021629 TNNC2 coding downstream 586004 20408227 ~ 20420243 (+)
XLOC_021614 NA non-coding upstream 337526 19473396 ~ 19476151 (+)
XLOC_021613 CR388168.1 non-coding upstream 594737 19217528 ~ 19218940 (+)
XLOC_021608 CR388168.2 non-coding upstream 631289 19177891 ~ 19182388 (+)
XLOC_021607 NA non-coding upstream 694234 19105546 ~ 19119443 (+)
XLOC_021606 CR788311.1 non-coding upstream 746690 19051485 ~ 19066987 (+)
XLOC_021632 CR352228.2 non-coding downstream 649532 20471755 ~ 20471870 (+)
XLOC_021651 NA non-coding downstream 1650879 21473102 ~ 21474482 (+)
XLOC_021656 CR847529.1 non-coding downstream 1801512 21623735 ~ 21623849 (+)

Expression


Co-expression Network