LOC110513832 (ccne2)


Basic Information

Item Value
gene id LOC110513832
gene name ccne2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22294867 ~ 22302014 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593534.2
TTGCCATGGAATGGTCAGATATATAAAGATTGGCGCCGGCGCGCCAGCTGATCATTATTCGTTCATTCATTTCTGAGGTGGAACTCTTGAAGCCTTCAATTGACAGAATGGCTAACGTTAGACGCAGTGGTCGCATCACATTACAAGCAAGAGATGAGAACGCACCGGAACAGAATGTCAAGATCACACGAAAAAGACAATCTGAGCCATCAAAAAAGATGCCACCCGCAGTGAAGAAACAAAGCTATGAAATACAGAAACGGTGGTCAGAAGAAGGGGCAAGTCCATGTGTCCTTGTAGAAACGCCACACAAGGAGCTTGTGATGACCAGAGACCTGTCTGGCTTCAAGCAGTTCCGATTCAAGAACATCTTCATCAAGACCTCACCGCTGCCCTGCCTCAGCTGGGCCAGCTCGGATGACGTGTGGATTAAGATGCTGAACAAGGAGCTGAAGTATGTCCATGACAAGGGCTTCCTACAGCAGCACCCCAAACTAAAGCCCAAGATGAGGGCCATTCTCCTGGACTGGCTTCTAGAGGTGAGTGAGGTGTACACTCTGCATCGAGAGACTGCTTATCTGGCTCAGGACTTCTTTGACCGCTTCATGCTGACACAGGATGATATGGCGAAGGACCGACTGCAGCTCATAGGAATCACAGCCCTCTTCATCGCGTCAAAGATAGAGGAAATCTACCCTCCAAAGCTCCATGAGTTTGCCTACGTTACTGACGGAGCCTGTGAGGAAGAAGCGATCCTGGAGATGGAACTTGTCATGTTGAAGGCGCTGAACTGGAACCTGTGTCCAGAGACAGTGATCACATGGCTGAAGCTCTATGCTCAGGTGGAGTCCCTAAAGGATGGTGTCAACTTCCTGGTACCTCAGTTCTCTCAGGACACCTACATCCAGATCACACAGCTTTTAGATCTGGCCATTCTGGACATCAACTCTCTGGACTACCAGTATGGGATACTGGCTGCTGCTGCCTTCTGCCATTTTTTCTCATTTGACGTTATCCACAAAGTATCAGGTCTGACGTGGGATAGTATTGCTCCCTGTGTCCGGTGGATGACCCCCTTCATGCGCACGGTCAGCGCCTGTCCCAGAGCAGAGCTCAAGGACTTTAAGAAAGTGACGTCTGACGACAGACACAACATCCAGACCCACGTAGACTACCTGTCCATGCTGAGCGACGCTCACCAGAGGCAACCGGACAGCCAAGACAGACTATCGCCTGCTGCCATAGGAGGGATATTGACTCCACCAAAAAGCACAGAGAAACCAGCCAATCACTGAGCCCCAGGGTCTCCTTGTGTTGATCTTCTGACCAACCAGATGAAGGGAGAATTCCCTAGATGTCATGCCTGATCAGCCAGAGGCTGGGAAACTTAACTTCGGAACGTCATCCTCACGTGACCAATCAAAATAGCTTTTGGGCATAACTCGCCTTTGTGTAGCATGTTAAAATGAGTTATTTTACTTTATATACCAAGCTGTATATCAGTATATATGCAGTACAACCATGGAAATCAGCTCATGGTTACTATATTGACTTAGTCAAATGATTGCAACAAAGACCCTGTTCTCGCAGTCTTAATCCCCAGAATTATAATTTTACATGGGGATAATTTGAGTTGACTCGGGTCTTTCTCCATAGGAAACATGTCTGCTGCTCCCCCTCTGTTACTTGAAGCTGAACATCTCAAGACATGGGATGTTTTGATGGCTAAAAAGCTCATTATTTGAGGTGAATTGGTACATAATGCTCACAGTTGAGTTGCTTAACTCAGTCTCTTAACATTGTGTTATCATGTGTATCTGGTGCTGTGTAGTTTAAATCTGGGTGCTCCTGGAAATGCTCAGCCATACAGTAACACTGAAAGCAGTCTTGATGTTAGCTCTGGTGACATTTTAAACATTTGAGCTGTTTGAAAGGGTAGTGCAGGGCTAACTGTTTACTACACGACCTTCTTAAACACTGTTTTGGAAGTTGTGTATTCTCACCACACTGTGAACGACTCATTGCGTATATTCTCACCACACTGTGAACGACTCATTGCATTCTCCTGCCACAACACATTCCTGGACAACTTGACTTCAGTAGTTTGATTTAGACCCTTTGGACTGACTTACAACTGTACGTAATTTTtacattgtatttattttttaatttaagcCTTAAAATGTTTTTATGTCCATATACATTCATAGGGCTATGAATTCAGGTCTTTAACAATGCCAAAGGCAAACGATTTAAGTCACGGGATGCATGTTATTTATGACTATCTGTTATTGGGTGGGAAAACCCGGTATAATGCAGTTACATATGAAATGTTGTAGGTTTGCGCTAGCCTATCCGTGGTGCCTTAGTTGAACTACTATGGTGATAGTGTGATGTGAAGACTTGAGAACCCAGAGGTTCCAGTGCAGGGCTCCAACCCAGTCAGTCTAGCAAACCTGTGACTGTCAACTGAAACCTTCAGTGTTGTGCAGATGCCTGCCGAGGCAGCAGTATACAAAGAACCATGTTTAAACTGTAAATGAAATACTAATGTATATATGTTATGTACATAAACTGAAAGTTATGTTTTCTAATGGAATTGTATTGAATAAATGACATAGAAATGTA

Function

symbol description
ccne2 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in G1/S transition of mitotic cell cycle and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to act upstream of or within regulation of cell cycle. Predicted to be part of cyclin E1-CDK2 complex and cyclin E2-CDK2 complex. Predicted to be active in centrosome; cytoplasm; and nucleus. Is expressed in brain; digestive system; head; and proliferative region. Human ortholog(s) of this gene implicated in castration-resistant prostate carcinoma. Orthologous to human CCNE2 (cyclin E2).

NR:

description
G1/S-specific cyclin-E2-like

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K06626 CCNE; G1/S-specific cyclin-E1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593534.2 True 2628 mRNA 0.45 12 22294867 22302014

Neighbor

gene id symbol gene type direction distance location
LOC110513818 gbp coding downstream 203539 22089856 ~ 22091328 (-)
LOC110513791 LOC106580504 coding downstream 243393 22043389 ~ 22051474 (-)
LOC118944504 LOC106605473 coding downstream 253983 22039478 ~ 22040884 (-)
LOC110503903 LOC106605471 coding downstream 345021 21937182 ~ 21949846 (-)
LOC110513756 LOC106580458 coding downstream 368553 21902473 ~ 21926314 (-)
LOC110513844 LOC106581355 coding upstream 3925 22305939 ~ 22317533 (-)
LOC110513910 LOC106605373 coding upstream 22708 22324722 ~ 22336054 (-)
LOC110513923 LOC106605373 coding upstream 34448 22336462 ~ 22341729 (-)
trnas-aga-55 NA coding upstream 142076 22444090 ~ 22444171 (-)
trnas-aga-56 NA coding upstream 142268 22444282 ~ 22444363 (-)
G235785 LOC106580611 non-coding downstream 10091 22283880 ~ 22284776 (-)
G235750 LOC106580611 non-coding downstream 52935 22241024 ~ 22241932 (-)
G235312 NA non-coding downstream 199829 22092314 ~ 22095038 (-)
G235283 NA non-coding downstream 277553 22016919 ~ 22017314 (-)
G235279 NA non-coding downstream 281303 22013257 ~ 22013564 (-)
G235793 NA non-coding upstream 16912 22318926 ~ 22319165 (-)
G235794 NA non-coding upstream 17341 22319355 ~ 22319576 (-)
G235779 NA non-coding upstream 20151 22322165 ~ 22323438 (-)
G235740 LOC106581338 non-coding upstream 42150 22344164 ~ 22347983 (-)
G235801 NA non-coding upstream 55364 22357378 ~ 22357604 (-)
LOC118946878 NA other downstream 539366 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 551456 21738845 ~ 21743411 (-)
G234621 NA other downstream 796035 21498408 ~ 21498832 (-)
G234600 NA other downstream 824922 21469661 ~ 21469945 (-)
LOC110513321 LOC106580205 other downstream 839151 21438546 ~ 21455972 (-)
G235881 NA other upstream 271819 22573833 ~ 22574989 (-)
G237047 NA other upstream 855095 23157109 ~ 23189031 (-)
LOC110514600 ensa other upstream 1469510 23771511 ~ 23780158 (-)
G237657 LOC106605316 other upstream 1878542 24180556 ~ 24183964 (-)
G237832 NA other upstream 2219205 24521219 ~ 24521544 (-)

Expression


Co-expression Network