LOC110513923 (LOC106605373)


Basic Information

Item Value
gene id LOC110513923
gene name LOC106605373
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22336462 ~ 22341729 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593568.2
GCTATGATTATGGGAGCTTAAAAGTAGAGTGAGCCAGTTACACACTTTCAATGTCGATGCTGTCATATGGCAACAATTTCAATTAATTGTCACTTTGCATTGGTCCTGATATGGCATGGTATTTGGATTTCGGAGTGCAACAATATCGGTCCCTCATTGGATGATGACCCATCTCCTTACTCCTACGGCCATAACCATGGACCCTCACACTCCCACCGTCATGTCCGAGACTGCCAGCCCGTTGTCCATGGCAACGTCGCCCACCAGACCTGGCCCGCCAGCAACCACACTGGGGTGCCCGCGGCTGAGTCCAAAGTCTTCATCTCTGACGTCCCTGGCACAACCCGATGGGTCACAGGTGACATTGCAGTGGTCCACGACCCACTGAGGACAGTGTCTGTGCTGGAGCCGAGGGGGTGCGGGGTGAACCAGCGGGAGGCGGTGGAGGAAACGGCTAACGTCGCCAGGTGTCTCTATGCCCAGAATGGAGGGTTCTTTGGTACTAGCACTGGGGAGTGTTTGGGGAATGTAGTCAGTGACGGGGTGCAAGTGAGGGACAGCCGAGGGGAGCAGAATGCCCAGTTTGGCATCAGGAGGGACGGTACACTGTTTTTTGGGAAAGAGCTGCCGGTCTTGTAAAATTtccttctcaatctctctctactCAATTTGAGCTCCATTTGTGGTTTTAATATCTAACATAATTTTTTCTAGACAAATGCTGTCAAGGCTTGTAGTTGAGTTTGTGGAACACTGATCCTGTTATCATAAAATATGAAGTTCTTATGTTTATAACCCTATCGCGTAATATGACGTCTACTTTGGAACATAACCAATTAGATTAGAACGGGACTCCCTGTTCCCTGGAGAAGTGTTGTGTTGACCTGTCAGTCATTCTGTGTAGAGTAATGGCTCTAACTTGGAATGTTCCTGTTACCCAGATAAGGGTGTTTACGTTCATGCACGTTTGATGGGAAAAATAAGAGCAGTGAAAAAGCAGTGGTCCTTGAACCAATAAAACCAGCCACCTGGAACAGACGGCTGCTTGGTTGTTGTGGCGTGGCTGAAGTAATATTGTATGGGCAGACTCACCAAAGCATTCAATGTGTccaatgtgccccccccccccccccgcctgagGGCTGTCAACACTAAGATATTTAACTGTCACAAACTGAAGTATAAACATTTCTTGTGGAAGCCAACAAAGCTAGCCaggtgaaaaaataaatattttacctttatttaactaggcaagtcagttaagaacaaattcttactttcaatgacagcccactgttcctaggctaactgcctgttcaggggcagaacaacagatttggtCCTTGTcagtaaccttttggttactagtccaacgctctaaccactaggctaccctgatgtGTACAGAGATTTAGGATGCACTTGAGCTTTTGGCTGCCTTTTAGAAATATTTTATCTCACTAGATTGCTGAATGTACCCTTTTTAACATGAGTATCGAAGTATGTGCTCTCATGACCACATTGTTCCACAGTTGGTTATTCCTTTCTTGAGATGGCACTGGATGATGTTAtttactttttcctcatttttgtCCCTGATTTTCcctctttacatccctgtttctCTACTTTTTTCCCTCAAGTTATCTCTCTGATGAGGCCAACCCCATTGTGCAGTTGGTCAGTGGGGTGGTGTGGCTGCTCCGAGACAGCCAGGTCTACATTAACCAGAGCATAGATGCTGAGTGAGCAAGGAGACAGGTCGCTACTGAAGGATACTGAGGATGTCTTCAACTTAGCCATACTTACTTAAAATGCTAGAGGTATGTAGTTAGTTAGTATTGACATCTTTTAATATTACTTTAGGTAAAGTCTCCCATTAAGTGGAGGTCTAGCATCGGCTTCCTCAACCATTAGATTAGGAAGTAAAAAGCAGGACTGGCCTTACGTTAGCACTTAGCGGTAACTTTGTCCTAGACTTGATGTAGAAATCTGTTTTTGGCTTCACATCACTCATATAACATGGCCATTTAAAACAGAGTTGTCATAATacacaataaaaaatacatttagaaatatgAAGAGAAATTTCCTGTGGCACAATTCACTAACGCGTATGGTGAAACACTGTTTGCCCATTCTGGCTAAGTTAAAACAACAATGATGTATTCTATCAAATTCAGCCAGTATgcttcaattacattttcatgCATTTGATTCCGCAGGGACTTTCCGCCATTTTGTGGACATGATGTCGGCCAGGACAGCGGTTGGTCACGATGAGGAGGGGAAACGGATCCtgtcttttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacggcctacgaacagtgggttaactgcctgttcaggggcagaacgacaga
>XM_036972186.1
GCTATGATTATGGGAGCTTAAAAGTAGAGTGAGCCAGTTACACACTTTCAATGTCGATGCTGTCATATGGCAACAATTTCAATTAATTGTCACTTTGCATTGGTCCTGATATGGCATGGTATTTGGATTTCGGAGTGCAACAATATCGGTCCCTCATTGGATGATGACCCATCTCCTTACTCCTACGGCCATAACCATGGACCCTCACACTCCCACCGTCATGTCCGAGACTGCCAGCCCGTTGTCCATGGCAACGTCGCCCACCAGACCTGGCCCGCCAGCAACCACACTGGGGTGCCCGCGGCTGAGTCCAAAGTCTTCATCTCTGACGTCCCTGGCACAACCCGATGGGTCACAGGTGACATTGCAGTGGTCCACGACCCACTGAGGACAGTGTCTGTGCTGGAGCCGAGGGGGTGCGGGGTGAACCAGCGGGAGGCGGTGGAGGAAACGGCTAACGTCGCCAGGTGTCTCTATGCCCAGAATGGAGGGTTCTTTGTTATCTCTCTGATGAGGCCAACCCCATTGTGCAGTTGGTCAGTGGGGTGGTGTGGCTGCTCCGAGACAGCCAGGTCTACATTAACCAGAGCATAGATGCTGAGTGAGCAAGGAGACAGGTCGCTACTGAAGGATACTGAGGATGTCTTCAACTTAGCCATACTTACTTAAAATGCTAGAGGTATGTAGTTAGTTAGTATTGACATCTTTTAATATTACTTTAGGTAAAGTCTCCCATTAAGTGGAGGTCTAGCATCGGCTTCCTCAACCATTAGATTAGGAAGTAAAAAGCAGGACTGGCCTTACGTTAGCACTTAGCGGTAACTTTGTCCTAGACTTGATGTAGAAATCTGTTTTTGGCTTCACATCACTCATATAACATGGCCATTTAAAACAGAGTTGTCATAATacacaataaaaaatacatttagaaatatgAAGAGAAATTTCCTGTGGCACAATTCACTAACGCGTATGGTGAAACACTGTTTGCCCATTCTGGCTAAGTTAAAACAACAATGATGTATTCTATCAAATTCAGCCAGTATgcttcaattacattttcatgCATTTGATTCCGCAGGGACTTTCCGCCATTTTGTGGACATGATGTCGGCCAGGACAGCGGTTGGTCACGATGAGGAGGGGAAACGGATCCtgtcttttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacggcctacgaacagtgggttaactgcctgttcaggggcagaacgacaga
>XR_005041742.1
GCTATGATTATGGGAGCTTAAAAGTAGAGTGAGCCAGTTACACACTTTCAATGTCGATGCTGTCATATGGCAACAATTTCAATTAATTGTCACTTTGCATTGGTCCTGATATGGCATGGTATTTGGATTTCGGAGTGCAACAATATCGGTCCCTCATTGGATGATGACCCATCTCCTTACTCCTACGGCCATAACCATGGACCCTCACACTCCCACCGTCATGTCCGAGACTGCCAGCCCGTTGTCCATGGCAACGTCGCCCACCAGACCTGGCCCGCCAGCAACCACACTGGGGTGCCCGCGGCTGAGTCCAAAGTCTTCATCTCTGACGTCCCTGGCACAACCCGATGGGTCACAGGTGACATTGCAGTGGTCCACGACCCACTGAGGACAGTGTCTGTGCTGGAGCCGAGGGGGTGCGGGGTGAACCAGCGGGAGGCGGTGGAGGAAACGGCTAACGTCGCCAGGTGTCTCTATGCCCAGAATGGAGGGTTCTTTGGTACTAGCACTGGGGAGTGTTTGGGGAATGTAGTCAGTGACGGGGTGCAAGTGAGGGACAGCCGAGGGGAGCAGAATGCCCAGTTTGGCATCAGGAGGGACGGTACACTGTTTTTTGGGAAAGAGCTGCCGGTCTTGTAAAATTtccttctcaatctctctctactCAATTTGAGCTCCATTTGTGGTTTTAATATCTAACATAATTTTTTCTAGACAAATGCTGTCAAGGCTTGTAGTTGAGTTTGTGGAACACTGATCCTGTTATCATAAAATATGAAGTTCTTATGTTTATAACCCTATCGCGTAATATGACGTCTACTTTGGAACATAACCAATTAGATTAGAACGGGACTCCCTGTTCCCTGGAGAAGTGTTGTGTTGACCTGTCAGTCATTCTGTGTAGAGTAATGGCTCTAACTTGGAATGTTCCTGTTACCCAGATAAGGGTGTTTACGTTCATGCACGTTTGATGGGAAAAATAAGAGCAGTGAAAAAGCAGTGGTCCTTGAACCAATAAAACCAGCCACCTGGAACAGACGGCTGCTTGGTTGTTGTGGCGTGGCTGAAGTAATATTGTATGGGCAGACTCACCAAAGCATTCAATGTGTccaatgtgccccccccccccccccgcctgagGGCTGTCAACACTAAGATATTTAACTGTCACAAACTGAAGTATAAACATTTCTTGTGGAAGCCAACAAAGCTAGCCaggtgaaaaaataaatattttacctttatttaactaggcaagtcagttaagaacaaattcttactttcaatgacagcccactgttcctaggctaactgcctgttcaggggcagaacaacagatttggtCCTTGTcagtaaccttttggttactagtccaacgctctaaccactaggctaccctgatgtGTACAGAGATTTAGGATGCACTTGAGCTTTTGGCTGCCTTTTAGAAATATTTTATCTCACTAGATTGCTGAATGTACCCTTTTTAACATGAGTATCGAAGTATGTGCTCTCATGACCACATTGTTCCACAGTTGGTTATTCCTTTCTTGAGATGGCACTGGATGATGTTAtttactttttcctcatttttgtCCCTGATTTTCcctctttacatccctgtttctCTACTTTTTTCCCTCAAGTTATCTCTCTGATGAGGCCAACCCCATTGTGCAGTTGGTCAGTGGGGTGGTGTGGCTGCTCCGAGACAGCCAGGTCTACATTAACCAGAGCATAGATGCTGAGTGAGCAAGGAGACAGGTCGCTACTGAAGGATACTGAGGATGTCTTCAACTTAGCCATACTTACTTAAAATGCTAGAGGGACTTTCCGCCATTTTGTGGACATGATGTCGGCCAGGACAGCGGTTGGTCACGATGAGGAGGGGAAACGGATCCtgtcttttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacggcctacgaacagtgggttaactgcctgttcaggggcagaacgacaga
>XR_005041743.1
GCTATGATTATGGGAGCTTAAAAGTAGAGTGAGCCAGTTACACACTTTCAATGTCGATGCTGTCATATGGCAACAATTTCAATTAATTGTCACTTTGCATTGGTCCTGATATGGCATGGTATTTGGATTTCGGAGTGCAACAATATCGGTCCCTCATTGGATGATGACCCATCTCCTTACTCCTACGGCCATAACCATGGACCCTCACACTCCCACCGTCATGTCCGAGACTGCCAGCCCGTTGTCCATGGCAACGTCGCCCACCAGACCTGGCCCGCCAGCAACCACACTGGGGTGCCCGCGGCTGAGTCCAAAGTCTTCATCTCTGACGTCCCTGGCACAACCCGATGGGTCACAGGTGACATTGCAGTGGTCCACGACCCACTGAGGACAGTGTCTGTGCTGGAGCCGAGGGGGTGCGGGGTGAACCAGCGGGAGGCGGTGGAGGAAACGGCTAACGTCGCCAGGTGTCTCTATGCCCAGAATGGAGGGTTCTTTGTTATCTCTCTGATGAGGCCAACCCCATTGTGCAGTTGGTCAGTGGGGTGGTGTGGCTGCTCCGAGACAGCCAGGTCTACATTAACCAGAGCATAGATGCTGAGTGAGCAAGGAGACAGGTCGCTACTGAAGGATACTGAGGATGTCTTCAACTTAGCCATACTTACTTAAAATGCTAGAGGGACTTTCCGCCATTTTGTGGACATGATGTCGGCCAGGACAGCGGTTGGTCACGATGAGGAGGGGAAACGGATCCtgtcttttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacggcctacgaacagtgggttaactgcctgttcaggggcagaacgacaga

Function

NR:

description
N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593568.2 False 2406 mRNA 0.45 3 22336462 22341729
XM_036972186.1 False 1259 mRNA 0.47 4 22336462 22341729
XR_005041742.1 False 2004 mRNA 0.46 4 22336462 22341729
XR_005041743.1 True 857 mRNA 0.52 5 22336462 22341729

Neighbor

gene id symbol gene type direction distance location
LOC110513910 LOC106605373 coding downstream 408 22324722 ~ 22336054 (-)
LOC110513844 LOC106581355 coding downstream 18929 22305939 ~ 22317533 (-)
LOC110513832 ccne2 coding downstream 34448 22294867 ~ 22302014 (-)
LOC110513818 gbp coding downstream 245134 22089856 ~ 22091328 (-)
LOC110513791 LOC106580504 coding downstream 284988 22043389 ~ 22051474 (-)
trnas-aga-55 NA coding upstream 102361 22444090 ~ 22444171 (-)
trnas-aga-56 NA coding upstream 102553 22444282 ~ 22444363 (-)
trnas-aga-57 NA coding upstream 103763 22445492 ~ 22445573 (-)
trnae-cuc-2 NA coding upstream 105015 22446744 ~ 22446815 (-)
LOC110503922 LOC106605367 coding upstream 105398 22447092 ~ 22449700 (-)
G235779 NA non-coding downstream 13024 22322165 ~ 22323438 (-)
G235794 NA non-coding downstream 16886 22319355 ~ 22319576 (-)
G235793 NA non-coding downstream 17297 22318926 ~ 22319165 (-)
G235785 LOC106580611 non-coding downstream 51686 22283880 ~ 22284776 (-)
G235750 LOC106580611 non-coding downstream 94530 22241024 ~ 22241932 (-)
G235740 LOC106581338 non-coding upstream 2435 22344164 ~ 22347983 (-)
G235801 NA non-coding upstream 15649 22357378 ~ 22357604 (-)
G235805 NA non-coding upstream 18945 22360674 ~ 22360888 (-)
G235810 NA non-coding upstream 22820 22364549 ~ 22364762 (-)
G235809 LOC106955111 non-coding upstream 23382 22365111 ~ 22366009 (-)
LOC118946878 NA other downstream 580961 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 593051 21738845 ~ 21743411 (-)
G234621 NA other downstream 837630 21498408 ~ 21498832 (-)
G234600 NA other downstream 866517 21469661 ~ 21469945 (-)
LOC110513321 LOC106580205 other downstream 880746 21438546 ~ 21455972 (-)
G235881 NA other upstream 232104 22573833 ~ 22574989 (-)
G237047 NA other upstream 815380 23157109 ~ 23189031 (-)
LOC110514600 ensa other upstream 1429795 23771511 ~ 23780158 (-)
G237657 LOC106605316 other upstream 1838827 24180556 ~ 24183964 (-)
G237832 NA other upstream 2179490 24521219 ~ 24521544 (-)

Expression


Co-expression Network