LOC110513964 (LOC106605368)


Basic Information

Item Value
gene id LOC110513964
gene name LOC106605368
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22430621 ~ 22441465 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593581.2
TAGTGTGCTCTACAGACAGAAGCCTATTTGATTTTGTGTCAGAGACGATGCTTGTGGAAAACCACAAGTTGCAGCAGTGCAAACAGAAATATAGTGAGTACACAAGTTCTGACATATAGAACACTGCTTTATTCATGATAAGATCAGTAACGTGCATTATTTGTTTGATTGTTATTAATATGAAAAGAACAAAGTTGTTTCCGGTTGAGGAGTATGTGCTCAAAGGACCCCGGCCTAACTGTTTTCTGTGAGATGGAACTGTTCAGGACAACAATACTTCTGTCAGTTCTGGTTCTCTCTCAAGGCTTTCTAAATAAAGACTACTCTGTTCCGGGGAACTTCTCTGGGTCGAGAGAGACTGATGAGCAGCAGACATCCAATCTAAccATATCTCACCCCCCCAGGCTATCTCATCACTGCTCTGGGGTTGTCGAGGTGCTCCATCGAGGGCTGTGGAGGCCGGTGACCTTTGACCTTGGGTCTGCAGAGTGGGCCAAAGTGGTGGAGGACATATGTACCAACCTGAGCTGCGGGGCAGTGTATGAGCTCCGACAGAATGGCACAGCTACTTTAAACTACTCCAGCTCAACGTGTCTGAGCCAGTGTGTCTACAGAGAGCTACTGGTGGAGAACTGTACAGAGCTCTCATACACAGACTGCTCTAACCTGACTGAGATAACCTGTGGGCACCAGGCCGTGCGATTGGCTGGAGGCTCACACCACTGTGAGGGACGGGTGGAGTTGTGGAGAGAGGAAAAATGGGGAACGGTGTGTGACGATAGTTGGGACCTGAGAGATGGGGGCGTGGTCTGTGCCCAATTGGGCTGTGGCTCTGCCCTAAATGTGAGTGGGGAGGACGGGTCCTTTGAAGCGGGTGTTGGTCAGGTTCTCTTAGATGAGGTGAACTGTGGGGGGAGCGAGAGGAACCTATGGGAGTGTCCCTCCATGGGGACAGTCAACGACTGTGGACACAAAGAGGACGCTGCAGTGGTTTGTTCAGGAATTCCATCTCAACCAGGCAACGAGACGGCAGAACAGAACACCCAGACTTCAACCACAGCAGGCTCAGTTCTACTAGTCACCAGTGCAGAGAGCCGGTCCTCTCCTCCCGCAGCTGCTGTCTGGGGCTGCATCGCATTGTCTATAGCCCTCCTCCTCACACTCCTCTCCAATGCCTCACTCTTCCTGTCTTACAGGAGGAGAGCTGCACTTCTGGTTCACCAAAGACAAGATGGCCGCCTGCTGTCCATCCAGTCTCAACACACCGACCGAGGGGAGAGTGTCAACCTCCTCACAGTCACCATGGACACAGCTGATTACACTCTACAGTACCTTTCCAAACAGCCCTCTCAGAATGACACCGACGCCTCGTGTGACTCTGACTATGAAAACTATGACTTCAATGACCAACCCTCTGTTGCCATGGCTACTGCACTTGTCAGGGTCCTTGACAATGGAGTAAGCACAAGCAGAGAGCCATGGGAAACCACGCAGACAGCAGAGACCTCTGACGCTCCTGAGAAATATAATATTGTTACTGAGACAATCAATGGCATTGAGAGAAATAACACTGCCACCCAAAGCCGTCATTCGCTGGTGTCATCCAGCACGTCTTCTGGGGAAAGCTATGAGAACATTGAGACACTGGAGAAGGAGCTGCTGGACTCAGGTCCAGATTTGAGAGAAACTGCCCTCACAGACTTGATCTGTGGAAGAGAGCCATCCTTGGGATCGAGTAGTAGTACAACATCAGGGGAATCCTACTACAACGTGGGGATGGCAGTGGAACAGCATCTACAGTCAGAGAACACCTATACACATTCCCCTGTGCAATCAACCAGTACACACCAGGATCAGCAACAGCCTGTGAACAGTAGCTGCCACCTACTGAGCAATCAAAATCAAGATGATTCAAGCAGCTCATCCTCCTCTGAGCTTTATGAGAACATAGGAGTCCAAGATGAAGAGGGGATTGGTGATGCTACTGTGAAAGAAGACCCGGACCAGTCTCTTTCTGACAGTGACTACGATGACATAACAAATTACTAGCATTTCATCAAACATAGCAGTGAAGTGAGAACTATAAAAACAGAGtcatttacattttagcagatgctattatcCAGAAAGACATACAGGGGAAATTAAGTGTAATTGCCTTGCTCAAAGATACAGACATATATTTTTTCACCTCGttagcttggggattcgaaccagcgacctttctgttactggcccaacggtcTTAACCCCATTCGCTTCTCCACTGCACAGAATGACCAGCATTGTCAACAAACTGCACTGTCACTGATATTGATTTAATACAGTGATCTGAGCCACACAAAGCAAAGTCAATGCACATCAAACTTTTTAAACTTGAAATTCAATTGTGTTAATATTATCAAGGAGAAAaagctaaaaaaataaataagtgcATACAACATATATTCAACTATGACTAAATGTGAATAGCCTAGTCTATACACGCATATGCAGATGTTTTGTACATAATATGAGCACATTTTTTACTCTCCAAAATACCTACTTCTGACTGGGTTATCACAACAAATCCCATGAATGTCTTTGGGAGTTAAGCTTTTTTTATGGTTCCCTGATGATGAATAAATTAGTACATATTTAATAAACTATC
>XM_021593583.2
TAGTGTGCTCTACAGACAGAAGCCTATTTGATTTTGTGTCAGAGACGATGCTTGTGGAAAACCACAAGTTGCAGCAGTGCAAACAGAAATATAGTGAGTACACAAGTTCTGACATATAGAACACTGCTTTATTCATGATAAGATCAGTAACGTGCATTATTTGTTTGATTGTTATTAATATGAAAAGAACAAAGTTGTTTCCGGTTGAGGAGTATGTGCTCAAAGGACCCCGGCCTAACTGTTTTCTGTGAGATGGAACTGTTCAGGACAACAATACTTCTGTCAGTTCTGGTTCTCTCTCAAGGCTTTCTAAATAAAGACTACTCTGTTCCGGGGAACTTCTCTGGGTCGAGAGAGACTGATGAGCAGCAGACATCCAATCTAAccATATCTCACCCCCCCAGGCTATCTCATCACTGCTCTGGGGTTGTCGAGGTGCTCCATCGAGGGCTGTGGAGGCCGGTGACCTTTGACCTTGGGTCTGCAGAGTGGGCCAAAGTGGTGGAGGACATATGTACCAACCTGAGCTGCGGGGCAGTGTATGAGCTCCGACAGAATGGCACAGCTACTTTAAACTACTCCAGCTCAACGTGTCTGAGCCAGTGTGTCTACAGAGAGCTACTGGTGGAGAACTGTACAGAGCTCTCATACACAGACTGCTCTAACCTGACTGAGATAACCTGTGGGCACCAGGCCGTGCGATTGGCTGGAGGCTCACACCACTGTGAGGGACGGGTGGAGTTGTGGAGAGAGGAAAAATGGGGAACGGTGTGTGACGATAGTTGGGACCTGAGAGATGGGGGCGTGGTCTGTGCCCAATTGGGCTGTGGCTCTGCCCTAAATGTGAGTGGGGAGGACGGGTCCTTTGAAGCGGGTGTTGGTCAGGTTCTCTTAGATGAGGTGAACTGTGGGGGGAGCGAGAGGAACCTATGGGAGTGTCCCTCCATGGGGACAGTCAACGACTGTGGACACAAAGAGGACGCTGCAGTGGTTTGTTCAGGAATTCCATCTCAACCAGGCAACGAGACGGCAGAACAGAACACCCAGACTTCAACCACAGGCTCAGTTCTACTAGTCACCAGTGCAGAGAGCCGGTCCTCTCCTCCCGCAGCTGCTGTCTGGGGCTGCATCGCATTGTCTATAGCCCTCCTCCTCACACTCCTCTCCAATGCCTCACTCTTCCTGTCTTACAGGAGGAGAGCTGCACTTCTGGTTCACCAAAGACAAGATGGCCGCCTGCTGTCCATCCAGTCTCAACACACCGACCGAGGGGAGAGTGTCAACCTCCTCACAGTCACCATGGACACAGCTGATTACACTCTACAGTACCTTTCCAAACAGCCCTCTCAGAATGACACCGACGCCTCGTGTGACTCTGACTATGAAAACTATGACTTCAATGACCAACCCTCTGTTGCCATGGCTACTGCACTTGTCAGGGTCCTTGACAATGGAGTAAGCACAAGCAGAGAGCCATGGGAAACCACGCAGACAGCAGAGACCTCTGACGCTCCTGAGAAATATAATATTGTTACTGAGACAATCAATGGCATTGAGAGAAATAACACTGCCACCCAAAGCCGTCATTCGCTGGTGTCATCCAGCACGTCTTCTGGGGAAAGCTATGAGAACATTGAGACACTGGAGAAGGAGCTGCTGGACTCAGGTCCAGATTTGAGAGAAACTGCCCTCACAGACTTGATCTGTGGAAGAGAGCCATCCTTGGGATCGAGTAGTAGTACAACATCAGGGGAATCCTACTACAACGTGGGGATGGCAGTGGAACAGCATCTACAGTCAGAGAACACCTATACACATTCCCCTGTGCAATCAACCAGTACACACCAGGATCAGCAACAGCCTGTGAACAGTAGCTGCCACCTACTGAGCAATCAAAATCAAGATGATTCAAGCAGCTCATCCTCCTCTGAGCTTTATGAGAACATAGGAGTCCAAGATGAAGAGGGGATTGGTGATGCTACTGTGAAAGAAGACCCGGACCAGTCTCTTTCTGACAGTGACTACGATGACATAACAAATTACTAGCATTTCATCAAACATAGCAGTGAAGTGAGAACTATAAAAACAGAGtcatttacattttagcagatgctattatcCAGAAAGACATACAGGGGAAATTAAGTGTAATTGCCTTGCTCAAAGATACAGACATATATTTTTTCACCTCGttagcttggggattcgaaccagcgacctttctgttactggcccaacggtcTTAACCCCATTCGCTTCTCCACTGCACAGAATGACCAGCATTGTCAACAAACTGCACTGTCACTGATATTGATTTAATACAGTGATCTGAGCCACACAAAGCAAAGTCAATGCACATCAAACTTTTTAAACTTGAAATTCAATTGTGTTAATATTATCAAGGAGAAAaagctaaaaaaataaataagtgcATACAACATATATTCAACTATGACTAAATGTGAATAGCCTAGTCTATACACGCATATGCAGATGTTTTGTACATAATATGAGCACATTTTTTACTCTCCAAAATACCTACTTCTGACTGGGTTATCACAACAAATCCCATGAATGTCTTTGGGAGTTAAGCTTTTTTTATGGTTCCCTGATGATGAATAAATTAGTACATATTTAATAAACTATC

Function

NR:

description
T-cell differentiation antigen CD6-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593581.2 False 2650 mRNA 0.47 13 22430621 22441465
XM_021593583.2 True 2647 mRNA 0.47 13 22430621 22441465

Neighbor

gene id symbol gene type direction distance location
LOC110513938 plekhf2 coding upstream 25804 22376761 ~ 22404817 (+)
LOC110513878 LOC106581338 coding upstream 73438 22341744 ~ 22357183 (+)
LOC110503919 LOC106605377 coding upstream 140431 22227628 ~ 22292941 (+)
LOC118944657 LOC106580616 coding upstream 205734 22156347 ~ 22224887 (+)
LOC110503910 LOC106580557 coding upstream 362753 22057484 ~ 22068080 (+)
LOC110514034 NA coding downstream 19059 22460524 ~ 22472917 (+)
LOC118947118 NA coding downstream 44587 22482472 ~ 22488203 (+)
LOC110514095 LOC106581260 coding downstream 71659 22513124 ~ 22544099 (+)
LOC110514114 can7 coding downstream 115657 22557122 ~ 22575110 (+)
LOC110514168 LOC106581241 coding downstream 170571 22612036 ~ 22618089 (+)
G235450 NA non-coding upstream 6515 22366840 ~ 22424106 (+)
G235442 NA non-coding upstream 94589 22335687 ~ 22336032 (+)
G235440 NA non-coding upstream 97918 22331882 ~ 22332703 (+)
G235438 NA non-coding upstream 99731 22330662 ~ 22330890 (+)
G235435 NA non-coding upstream 103746 22326413 ~ 22326875 (+)
G235484 NA non-coding downstream 360 22441825 ~ 22442083 (+)
G235496 NA non-coding downstream 15730 22457195 ~ 22459090 (+)
G235495 LOC106581291 non-coding downstream 17695 22459160 ~ 22460466 (+)
G235545 NA non-coding downstream 138013 22579478 ~ 22579807 (+)
G235426 LOC106581355 other upstream 125715 22303641 ~ 22304906 (+)
kiaa0319 LOC106580477 other upstream 410637 22017579 ~ 22037490 (+)
G234340 LOC106580151 other upstream 1143619 21286726 ~ 21287002 (+)
G234322 dcst2 other upstream 1166115 21264075 ~ 21264506 (+)
G235571 NA other downstream 231271 22672736 ~ 22698834 (+)
G235569 NA other downstream 232060 22673525 ~ 22685509 (+)
G236271 LOC106581124 other downstream 707687 23144516 ~ 23191853 (+)
G236301 NA other downstream 757387 23198852 ~ 23199075 (+)

Expression


Co-expression Network