LOC110503922 (LOC106605367)


Basic Information

Item Value
gene id LOC110503922
gene name LOC106605367
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22447092 ~ 22449700 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110503922
atgtcacTTTGTGTGCACAGCAGGTATATGAAGGATGCTGAAGATACAAGGTCAAAATGCGGTGAGGATTCGGTTCTTTACCTGGGGTCAGGCACTGGTCAGTGAGGCGGTACAAGCTGGGTGAGAAGCCCTATAATAAGGAGTCTGGTCTATTGATGAAGAGGCTATCACCTAACAGCACCACCCAATGGTACGCAGGTTTGGAGCGTGAAGTGGAACTTTTGGCTGATAATTATTTTGATATCTTCCTGCTCAATGTAACAGCTGTTGATAGTGGGAGGTACAAGTGTCTGTAGGAGAGCAGAACCAGGAGGGGCAGGTTCACCTCAGAGTGACTGGTTGCCTTGACAATAAGTCCACAGACCAATCAGAAGAAAGCAATACCATCCTAGTTCTTTCCATTGTGGGGCTTATGGCAGCATTGCTCACCATCAGCTATGTAACCGTTACAAATATGTTAATACAAAGGAGAAAGAAGAATCCACAAGAACAACTTCTAGATGCACCCTTTGAGAAGAAGGATTTAATGTTGATCTACACTCTGGGGCCAAACTGGTCGGGACAAGCTTCCATAAAACATGATGTCTGTGTGCGAGACCCTGTTCAGCTAGTTTGGGCTCATTGTATACTTGAATGAGGAAAGGCAGAGAAAGACTAGTGAACTTTTGAAGCTGAGCAAGGAGCCTAAATGTCATGTCTACTTTCTGTAGAGTTCACCTCTAGAGCAGAGGGAGGCAGACAACCCTCTGGCCGGTCCTGTAGAACCAATACGTGTAGGCTTTTCAAAGAAATAAAACAGAAACTGTAGCCTACACCCTTTCTGAGAAATTGAAAGTATCAGGGACATTATGACAAATTTACACAGAATGAAAGTTAAAGTGAGAGCTTAGTCTGTAAAATAAAAGAGAAACCACGGCTCCCCA
>TU269576
GCATAAAGTAACCTCACACCCTCTTCTCCCAGCTGGGTGAGAAGCCCTATAATAAGGAGTCTGGTCTATTGATGAAGAGGCTATCACCTAACAGCACCACCCAATGGTACGCAGGTTTGGAGCGTGAAGTGGAACTTTTGGCTGATAATTATTTTGATATCTTCCTGCTCAATGTAACAGCTGTTGATAGTGGGAGGTACAAGTGTCTGTAGGAGAGCAGAACCAGGAGGGGCAGGTTCACCTCAGAGTGACTGGTTGCCTTGACAATAAGTCCACAGACCAATCAGAAGAAAGCAATACCATCCTAGTTCTTTCCATTGTGGGGCTTATGGCAGCATTGCTCACCATCAGCTATGTAACCGTTACAAATATGTTAATACAAAGGAGAAAGAAGAATCCACAAGAACAACTTCTAGATGCACCCTTTGAGAAGAAGGATTTAATGTTGATCTACACTCTGGGGCCAAACTGGTCGGGACAAGCTTCCATAAAACATGATGTCTGTGTGCGAGACCCTGTTCAGCTAGTTTGGGCTCATTGTATACTTGAATGAGGAAAGGCAGAGAAAGACTAGTGAACTTTTGAAGCTGAGCAAGGAGCCTAAATGTCATGTCTACTTTCTGTAGAGTTCACCTCTAGAGCAGAGGGAGGCAGACAACCCTCTGGCCGGTCCTGTAGAACCAATACGTGTAGGCTTTTCAAAGAAATAAAACAGAAACTGTAGCCTACACCCTTTCTGAGAAATTGAAAGTATCAGGGACATTATGACAAATTTACACAGAATGAAAGTTAAAGTGAGAGCTTAGTCTGTAAAATAAAAGAGAAACCACGGCTCCCCATCCATTATAGAATCATTAAGTTAGTAAGTGGTGGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110503922 False 923 mRNA 0.44 5 22447127 22449700
TU269576 True 874 lncRNA 0.44 3 22447092 22448225

Neighbor

gene id symbol gene type direction distance location
trnae-cuc-2 NA coding downstream 312 22446744 ~ 22446815 (-)
trnas-aga-57 NA coding downstream 1554 22445492 ~ 22445573 (-)
trnas-aga-56 NA coding downstream 2764 22444282 ~ 22444363 (-)
trnas-aga-55 NA coding downstream 2956 22444090 ~ 22444171 (-)
LOC110513923 LOC106605373 coding downstream 105398 22336462 ~ 22341729 (-)
LOC110514021 LOC106581291 coding upstream 7712 22457412 ~ 22460489 (-)
LOC110513982 LOC106581283 coding upstream 12680 22462380 ~ 22488022 (-)
snrnp48 LOC106581266 coding upstream 39121 22488821 ~ 22495924 (-)
LOC110514079 LOC106605359 coding upstream 49745 22499445 ~ 22506678 (-)
LOC110505130 NA coding upstream 98100 22547800 ~ 22548892 (-)
G235846 NA non-coding downstream 18603 22428231 ~ 22428524 (-)
G235843 NA non-coding downstream 22598 22424213 ~ 22424529 (-)
G235809 LOC106955111 non-coding downstream 81118 22365111 ~ 22366009 (-)
G235810 NA non-coding downstream 82365 22364549 ~ 22364762 (-)
G235805 NA non-coding downstream 86239 22360674 ~ 22360888 (-)
G235860 NA non-coding upstream 75703 22525403 ~ 22526021 (-)
G235900 NA non-coding upstream 133125 22582825 ~ 22584854 (-)
G235916 NA non-coding upstream 150130 22599830 ~ 22600792 (-)
G235921 NA non-coding upstream 158177 22607877 ~ 22608110 (-)
LOC118946878 NA other downstream 691626 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 703716 21738845 ~ 21743411 (-)
G234621 NA other downstream 948295 21498408 ~ 21498832 (-)
G234600 NA other downstream 977182 21469661 ~ 21469945 (-)
LOC110513321 LOC106580205 other downstream 991411 21438546 ~ 21455972 (-)
G235881 NA other upstream 124133 22573833 ~ 22574989 (-)
G237047 NA other upstream 707409 23157109 ~ 23189031 (-)
LOC110514600 ensa other upstream 1321824 23771511 ~ 23780158 (-)
G237657 LOC106605316 other upstream 1730856 24180556 ~ 24183964 (-)
G237832 NA other upstream 2071519 24521219 ~ 24521544 (-)

Expression


Co-expression Network