LOC110514021 (LOC106581291)


Basic Information

Item Value
gene id LOC110514021
gene name LOC106581291
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22457412 ~ 22460489 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593617.2
CGGGAATCCCCTTAGTTTCACTTCCATTTTAGCTTACTATATAAAATGATTCACTTATTTTCTGGATCATCATCTTCATTGCTGTAGTTCTACAAATATGTTTTTTCAACTCGTCTGCATTCTAGCTGCCTACTTGCAAGGTGGGCTTACACAGGATAAGCCTACACAAGAGGTGAAGTCAGTTTGTGGAGAGGACTCAATTCTGAAATGTAAAGCAATACGTAAGCCTGGGGTCCAGTACCGGGCGGTGAGGTGGTACAAGCTGGGTGAGAAGCCCTATAATAAGGAGTCTGGTCTATTGATGAAGAGGCTATCACCTAACAGCACCACCCTACGGTTTGCAGGTTTGGAGCGTGAAGTGGAACTTTTGGCTGACGATTCTTTCGATATCTTCCTGCCCAATGTAACGGCTGTTGATAGCGGGAGGTACAAGTGTCTCCTGGCAGCACCTGTAGGAGAGCAGAACCAGGAGGGGCAGGTTCACCTCAGAGTGACAGGTTGCCTTGAGTCCACATACCAATCAGAAGAAATGGATACCATTCTAGTTCTTTCCATTGTGGGGATTGTTGCGGCATTGCTGATATTCACCATCAGCTATGTCATCCTAAGGAATATGTTATTGCAAAGGAGTAAGAAGTATCCACAAGAACCACTTCTAGATGCACCCCTTGAGAAAAAAGATTTAATGTTGATCTACACTCTGGGGCCAAACTGGTCAGGACAGGGTTCCATAaaacatgtctgtgtgtgagaccCTGTTCTGCTAGTTTGGGCTCATTGTATACTTGAATGTGAAGAGGAAACACAGAGAAAGACTAGAGCCCATTTGAAGCTGAGCAAGGAGCCTAAGAGTCATGTCTACTTTCCAGAGAGTTCACGTCTAGAGCAGAGGGAGGCAGACAAACCTCTGGACGATCCTGTAGAACTAAATTGTGTAGGTATGACTGCAGCATTCAAGAGCAAGGAGCAGGGCATGGTGAATGGACCCCACGATCTAAGCCCCAAGATCAAACCCCAACAAGGAACTTCAGGAAAGGGAGAATAAATAATGAATGATACGGCGTGTggggttctgagaatatgaaatatacttattcatgtcactgagggagagagggtaatgtataacgtttacattatatCAGGGATCctatggttatctgtaggaggaaggtatatagtgtgtgcaattaagcttggaatgtgcTGAGTGCAGGGAAGCGATCACATAtggcaggcattgataaggggagagagccatggattagtgatgaagggggtcgaggtcaggtcaggtcacgttAAGGGAGAAAGAAAAGTTTATGGCCATATTACTTAGTTTCCTGCCTAGCAGTAAAGATACAATCAGAtgggtaggaggagactcagcctaagagaaagggttaaatatcagtgcttgtgtgaaaatctttttgtctaatgcagctgtattgatcctctgggaagaataaacttggtaAAGCTTTCATAGTGCCATTGAGTTTTTACTCTGAAAATTAGAACCTAATAGGGGTCATTCTGCAGGGTCTTTCCATGGCAATGTTGGGGTTAATTCCATTTACATTTCAGTCAACCCAGTCAATTGAAGTTTCAGTAATTGGAAGATGAAATTGATTTTGAACTGGAAAATGATCAATGTGCACTGCATTGAATTTCATGCCTAATTAAAATCCTTTATTGACAagtattgaaatggaattgatctGAGTACTGTTCAATGGGACTCACCCGTGTTGGAAGGATTTGGTGGGACATGCTGGACTCTGCACAGAGAGATGAAATCAACCAAGACTGCATTCCATCTGAGCCAAGCAAAGCTCTCAATTAACTCTAATGTTCAGGAATTATCGATAACTTTTAGTTATTTTAGTTTTGTGAGGTCAAAACAGTATATACTTTTTTATGCAGAACCAAA

Function

NR:

description
CD83 antigen-like

GO: NA

KEGG:

id description
K06510 CD83; CD83 antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593617.2 True 1936 mRNA 0.43 5 22457412 22460489

Neighbor

gene id symbol gene type direction distance location
LOC110503922 LOC106605367 coding downstream 7712 22447092 ~ 22449700 (-)
trnae-cuc-2 NA coding downstream 10597 22446744 ~ 22446815 (-)
trnas-aga-57 NA coding downstream 11839 22445492 ~ 22445573 (-)
trnas-aga-56 NA coding downstream 13049 22444282 ~ 22444363 (-)
trnas-aga-55 NA coding downstream 13241 22444090 ~ 22444171 (-)
LOC110513982 LOC106581283 coding upstream 1891 22462380 ~ 22488022 (-)
snrnp48 LOC106581266 coding upstream 28332 22488821 ~ 22495924 (-)
LOC110514079 LOC106605359 coding upstream 38956 22499445 ~ 22506678 (-)
LOC110505130 NA coding upstream 87311 22547800 ~ 22548892 (-)
LOC110514133 LOC106581253 coding upstream 115458 22575947 ~ 22603330 (-)
G235846 NA non-coding downstream 28888 22428231 ~ 22428524 (-)
G235843 NA non-coding downstream 32883 22424213 ~ 22424529 (-)
G235809 LOC106955111 non-coding downstream 91403 22365111 ~ 22366009 (-)
G235810 NA non-coding downstream 92650 22364549 ~ 22364762 (-)
G235860 NA non-coding upstream 64914 22525403 ~ 22526021 (-)
G235900 NA non-coding upstream 122336 22582825 ~ 22584854 (-)
G235916 NA non-coding upstream 139341 22599830 ~ 22600792 (-)
G235921 NA non-coding upstream 147388 22607877 ~ 22608110 (-)
LOC118946878 NA other downstream 701911 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 714001 21738845 ~ 21743411 (-)
G234621 NA other downstream 958580 21498408 ~ 21498832 (-)
G234600 NA other downstream 987467 21469661 ~ 21469945 (-)
LOC110513321 LOC106580205 other downstream 1001696 21438546 ~ 21455972 (-)
G235881 NA other upstream 113344 22573833 ~ 22574989 (-)
G237047 NA other upstream 696620 23157109 ~ 23189031 (-)
LOC110514600 ensa other upstream 1311035 23771511 ~ 23780158 (-)
G237657 LOC106605316 other upstream 1720067 24180556 ~ 24183964 (-)
G237832 NA other upstream 2060730 24521219 ~ 24521544 (-)

Expression


Co-expression Network