LOC110513982 (LOC106581283)


Basic Information

Item Value
gene id LOC110513982
gene name LOC106581283
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22462380 ~ 22488022 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593599.2
TGCCCCTGTGTGtatttggggttagggttagactcagGTATTTCTCACCCTGTCGAGGAGAAGAGGGAGCCGAGCCCGTGGCTGCCTGAGAACCTTATGgaaccctgagagagggagagcaagggagagagcgagaggaaggggAACCAGTGCCGTGAGTGGGGAGCGAGAATGCTGTAAAGAGCACAGTTCAGGGAGGAAATAAACTGGACTTTTCTGtctatattatttttttaaactggacTATCTGATACGTTGAGTGAGTGTCTGGTCTCAGTGGATTATACAGAACCAAACAGACAGAACCAGCACCATGGGAGCCCCCAGGGTAAAGGTGTCCGTTATCTCGCCGCTACTCGTGCTCCTATTgtgcatccctccctcccacgcGCAGGACGAGTACTCTGGTTACCACTCAGGTGATGAACACACCTATGAGGGCTCCTTGGTCGACAACTATGAGCATTCAGGATACCCACAACCAGAGGAATACCCACCGGAGCACACTCACAGCTATGAGGAGCAGCAACCCTCATCTGGATATGACCCCTATGTACCAGCCCCCACCAGCGTGAGCATGATCACAGAGGACTCCtacccctacaccaccaccacacagGTGCCATACGAGCAGGAGCCCTACTACGAAGAGTCGCTCCAGGCCCCTGGTGGTGGGGAGGCTTCTCTGGGGGAGGAGGGGCCAACAGACTGTAACTGTGAGCCAGGAGAGCCAGGGTTCGCTGGGTTTGCAGGGCCCAAGGGAGCCAGAGGACTGCAAGGTAAAGATGGCTTCCCTGGGGCTCAAGGACGCGAGgggTACAAAGGATTCAAAGGAGTTctaggaagaggaggagacacaggGCCTGAGGGTGACTCCGGGCCTGATGGGGAGGATGGTGCCTCTGGTTTCTCTGGAGCCCAGGGCTTGCCTGGTCTTCCTGGCGATCCAGGTGAGACTGGGGTGCTAGGTCTGAAGGGTGACATCGGTATGGAGGGGCCACGCGGAGGAGTCGGGGTAACGGGTGAGACTGGTCCAATTGGTGAGGCAGGGCCTGGTGGGCCTGATGGAACTGGAGGTATCAAGGGATCAACTGGAGCAGAAGGGAAACAGGGTCCTGAGGGAACAGAAGGGGAAAAGGGTCAGATTGGAGCACCTGGATTCTCAGGAGACCATGGGGAGATGGGCTATAATGGGTATCCTGGAGAGccaggaggcagaggagagactGGTCACAAGgGTGACCAAGGCCCAGGGGGCATGCCAGGCAGTGATGGGGAACCTGGAGAGGATGGTCCTCTTGGAGTTCCCGGGGTGATCGGCTTTCCTGGAGAGTTTGGACAAAAGGGCGCGAGAGGGGATCGTGGTGTGAGGGGACCTCTTGGGAGAGTAGGAGCTGGGGGGCCtcaaggagagaggggagatgcaGGAGTTCCAGGGAAACCAGGACCTAAAGGCCTGCAGGCCCAGCCTGGAGCCAAAGGGGAGACAGGTCCCGATGGTGATAAGGGTGGGGTTGGAAGAACTGGAGtgaagggagggaaaggagacAAGGGAAGTTTTGGAGCACATGGTGACAAAGGACAGCAAGGGGAGAGAGGTACCATCGGCCCTGATGGCATTGTTGGACGAAATGGACCCCCCGGCATCCCAGGCTCCAGAGGAGAGCCAGGTCCAGGCGGTGACCTGGGCGTCAAAGGTGGCTCTGGACCTAAAGGAGTGCCAGGTGCCCCTGGCCCTGGGCTGACAGATGAGCAGGTATTGCAGCTGTGTAAAGGAGTGGTGACAGCCCAGATCTCCCAGTATGCAGCTTCCATCCGGGCCAAGTGTTCCCAAGGCTGCCCCATCAACAACCGCACACTCATTGGGCCGCCCGGAACCAGGGGACCAACTGGAGAATCAGGCAAACCCggtaAAGCGGGCAAAGCTGGAGTCAAAGGAGCCAGGGGCATCCAAGGGGACACAGGAGTGGATGGTCAGAAGGGGgcagagggggaaagagGAACAAAAGGTCCGAAAGGAAAGGGGGGTGAGCCTGGTAAAGGTCTGCCAGGACACGATGGGCATCAAGGTCTCAGAGGGCTGCCAGGCCACCCAGCAGAGCCAAATAACGGTATGGCAGGTCCCAGAGGGCCCCGTGGTTTCACAGGCGCTTTAGGTCAGCCTGGCATGGCGGGCAACGCAGGAGTGCCCGGCTTCTGTGAGGCACGGGACTGCAGCATTCACGCGCCTGTGATGCGCAAGGAGCAGGGCCTAGTGAAGGGACCCCGCGATCTAAGCCCCAAGATCTAACCCCAACAAGGAGCTTCAGGAAAAGCTGTCCACAGGAAGTGAATGTTGTCTGGAGGCATGGTGGAGATAATTGGGCAGAGAGCTTATGGTTTTGTTTGGTGAGAGCACATTGCTAATGAAGTTTGAGCTTCAACTGAGAACTGGAGAAAATGGACGCCTTTCTCCTGGGCTGCATCACTCATGAGCCCCTTTTGTTTTCTTAGGTTTGTGTGTTTCTTCTGATTTTTTAAATAAACTATCTTGGTTTAAAAGTGAAA
>XM_036972237.1
TGCCCCTGTGTGtatttggggttagggttagactcagGTATTTCTCACCCTGTCGAGGAGAAGAGGGAGCCGAGCCCGTGGCTGCCTGAGAACCTTATGgaaccctgagagagggagagcaagggagagagcgagaggaaggggAACCAGTGCCGTGAGTGGGGAGCGAGAATGCTGTAAAGAGCACAGTTCAGGGAGGAAATAAACTGGACTTTTCTGtctatattatttttttaaactggacTATCTGATACGTTGAGTGAGTGTCTGGTCTCAGTGGATTATACAGAACCAAACAGACAGAACCAGCACCATGGGAGCCCCCAGGGTAAAGGTGTCCGTTATCTCGCCGCTACTCGTGCTCCTATTgtgcatccctccctcccacgcGCAGGACGAGTACTCTGGTTACCACTCAGGTGATGAACACACCTATGAGGGCTCCTTGGTCGACAACTATGAGCATTCAGGATACCCACAACCAGAGGAATACCCACCGGAGCACACTCACAGCTATGAGGAGCAGCAACCCTCATCTGGATATGACCCCTATGTACCAGCCCCCACCAGCGTGAGCATGATCACAGAGGACTCCtacccctacaccaccaccacacagGTGCCATACGAGCAGGAGCCCTACTACGAAGAGTCGCTCCAGGCCCCTGGTGGTGGGGAGGCTTCTCTGGGGGAGGAGGGGCCAACAGACTGTAACTGTGAGCCAGGAGAGCCAGGGTTCGCTGGGTTTGCAGGGCCCAAGGGAGCCAGAGGACTGCAAGGTAAAGATGGCTTCCCTGGGGCTCAAGGACGCGAGgggTACAAAGGATTCAAAGGAGTTctaggaagaggaggagacacaggGCCTGAGGGTGACTCCGGGCCTGATGGGGAGGATGGTGCCTCTGGTTTCTCTGGAGCCCAGGGCTTGCCTGGTCTTCCTGGCGATCCAGGTGAGACTGGGGTGCTAGGTCTGAAGGGTGACATCGGTATGGAGGGGCCACGCGGAGGAGTCGGGGTAACGGGTGAGACTGGTCCAATTGGTGAGGCAGGGCCTGGTGGGCCTGATGGAACTGGAGGTATCAAGGGATCAACTGGAGCAGAAGGGAAACAGGGTCCTGAGGGAACAGAAGGGGAAAAGGGTCAGATTGGAGCACCTGGATTCTCAGGAGACCATGGGGAGATGGGCTATAATGGGTATCCTGGAGAGccaggaggcagaggagagactGGTCACAAGgGTGACCAAGGCCCAGGGGGCATGCCAGGCAGTGATGGGGAACCTGGAGAGGATGGTCCTCTTGGAGTTCCCGGGGTGATCGGCTTTCCTGGAGAGTTTGGACAAAAGGGCGCGAGAGGGGATCGTGGTGTGAGGGGACCTCTTGGGAGAGTAGGAGCTGGGGGGCCtcaaggagagaggggagatgcaGGAGTTCCAGGGAAACCAGGACCTAAAGGCCTGCAGGCCCAGCCTGGAGCCAAAGGGGAGACAGGTCCCGATGGTGATAAGGGTGGGGTTGGAAGAACTGGAGtgaagggagggaaaggagacAAGGGAAGTTTTGGAGCACATGGTGACAAAGGACAGCAAGGGGAGAGAGGTACCATCGGCCCTGATGGCATTGTTGGACGAAATGGACCCCCCGGCATCCCAGGCTCCAGAGGAGAGCCAGGTCCAGGCGGTGACCTGGGCGTCAAAGGTGGCTCTGGACCTAAAGGAGTGCCAGGTGCCCCTGGCCCTGGGCTGACAGATGAGCAGGTATTGCAGCTGTGTAAAGGAGTGGTGACAGCCCAGATCTCCCAGTATGCAGCTTCCATCCGGGCCAAGTGTTCCCAAGGCTGCCCCATCAACAACCGCACACTCATTGGGCCGCCCGGAACCAGGGGACCAACTGGAGAATCAGGCAAACCCggtaAAGCGGGCAAAGCTGGAGTCAAAGGAGCCAGGGGCATCCAAGGGGACACAGGAGTGGATGGTCAGAAGGGGgcagagggggaaagagGAACAAAAGGTCCGAAAGGAAAGGGGGGTGAGCCTGGTAAAGGTCTGCCAGGACACGATGGGCATCAAGGTCTCAGAGGGCTGCCAGGCCACCCAGCAGAGCCAAATAACGGTATGGCAGGTCCCAGAGGGCCCCGTGGTTTCACAGGCGCTTTAGGTCAGCCTGGCATGGCGGGCAACGCAGGAGTGCCCGGCTTCTGTGAGGCACGGGACTGCAGCATTCACGCGCCTGTGATGCGCAAGGAGCAGGGCCTAGTGAAGGGACCCCGCGATCTAAGCCCCAAGATCTAACCCCAACAAGGAGCTTCAGGAAAAGGACTAGGTGTGTGAGgtaggaatcaggcgcagagagcagagagttccAAGGGAGAAGTGCACTTTAATGTGGCACCAAAATACAATGCCCAAACACAGGGCTCGAAAATAcggaccaacccaaaacacagggtagcCAGTCCGGAGCATGAACACACCCAACAACACAACACGTAACACCAGAATAATCCCGCCGAAAACAATGGCGGGTTTGCTAGCCTTAAATAAGGACGCCCATCAGGAAAACATAATAGGACagaggtgcaactaataagactaaaccaacagaaaaaggaaaagggatcggtggcggctagtaggccggtgacgacgacagccgagcaccgcccgaacaggcaggggagccaactttggcggaagtcgtgacacatttACAGATGTTCACAGACAAGATAACAATGATCAATATAAAATAAAAACGTACTATTTCATATTATTTCATATTAAAAATAATACATGGACATTTGTTATACAGTGTGTATTGTATATGGAATTTATATAGTTATATAATCTGCCAATGATTTGTAGCACAAAATGTCTGTCGATTAAATTAATTTGCTATATTCATTGGATGTAGGTTTTGATTTATTAAATAGATTTTCATGTACATTCACGTGAACAGGATGTTCAACTCCTCTTAACTGATATTTTTGTCATTGTCAATCTTCATTTGAGAATCATCCCAACACGTTACAAGGCGGAAACATAGCCCTGTAAACTCAATTATATTACACGTGTTCTTAACATTTGTACTTTTGTGTACATATGTTGGCAATCAGAACCCTGATAAAAATGCATCACAATGTttggaaacatttttttttaatgcatcACCACCACATCACATGACAGATTAGAAAATGAGCAGAACATGAACATGGGTGATAGTCTCATCAAAAGCATGCAAAACATTACAACTATGCTACGAAAGTACACATACATGGCATCAACGGACAAGAAAATGAACTTGTTTAACGCTGCTCATGTTCAAAAGGGCTCCTCTTAATGTGTGTAAAATGATGGTTGTTAGTTCATATAAAAGTGTTTGGTTGTATGGACTGGGGGCAGGTAATAAGTATTATTAATACCAAGTGTTAAACAATATTTTACAGTATATCTCTCTGAAATCTACCTGGTGAAATCTATCCACTTCATTGAGTCACTTGTCTCTAAGCTTATTGTCTGATCTAGGGGTCAGTAGGTGTAGCTATATTTGTACCAATACAAAATGGTCCAATGCAAAGTGGATATTATTTTAAAAACGGACACTacttaaaatatatattcttaAAATCTTGCAAAATAAATTCCTTAATTTGATGGGACATAAAAACACATACAATTTGACATTGGTCCCAAGGCATATTGAAGTACTGCCATTTTGTGCCAAAACATTGTCCATAGGAGAGATGATTGGCTTGTAATGGACCATTTCACAGCTTGTTTTTCTAGCTAATTGTACATTCATACTTTGGTAATTTGTGCTTTTTAGAATTAATAGGTAATAAATAGCTTCATAAATATATGTAATAAATAACACTGTCTACATGGCACAACATGTTGAGGCAGTGGTCAGCAGCAA
>XM_021593592.2
GCCCCTGTGTGtatttggggttagggttagactcagGTATTTCTCACCCTGTCGAGGAGAAGAGGGAGCCGAGCCCGTGGCTGCCTGAGAACCTTATGgaaccctgagagagggagagcaagggagagagcgagaggaaggggAACCAGTGCCGTGAGTGGGGAGCGAGAATGCTGTAAAGAGCACAGTTCAGGGAGGAAATAAACTGGACTTTTCTGtctatattatttttttaaactggacTATCTGATACGTTGAGTGAGTGTCTGGTCTCAGTGGATTATACAGAACCAAACAGACAGAACCAGCACCATGGGAGCCCCCAGGGTAAAGGTGTCCGTTATCTCGCCGCTACTCGTGCTCCTATTgtgcatccctccctcccacgcGCAGGACGAGTACTCTGGTTACCACTCAGGTGATGAACACACCTATGAGGGCTCCTTGGTCGACAACTATGAGCATTCAGGATACCCACAACCAGAGGAATACCCACCGGAGCACACTCACAGCTATGAGGAGCAGCAACCCTCATCTGGATATGACCCCTATGTACCAGCCCCCACCAGCGTGAGCATGATCACAGAGGACTCCtacccctacaccaccaccacacagGTGCCATACGAGCAGGAGCCCTACTACGAAGAGTCGCTCCAGGCCCCTGGTGGTGGGGAGGCTTCTCTGGGGGAGGAGGGGCCAACAGACTGTAACTGTGAGCCAGGAGAGCCAGGGTTCGCTGGGTTTGCAGGGCCCAAGGGAGCCAGAGGACTGCAAGGTAAAGATGGCTTCCCTGGGGCTCAAGGACGCGAGgggTACAAAGGATTCAAAGGAGTTctaggaagaggaggagacacaggGCCTGAGGGTGACTCCGGGCCTGATGGGGAGGATGGTGCCTCTGGTTTCTCTGGAGCCCAGGGCTTGCCTGGTCTTCCTGGCGATCCAGGTGAGACTGGGGTGCTAGGTCTGAAGGGTGACATCGGTATGGAGGGGCCACGCGGAGGAGTCGGGGTAACGGGTGAGACTGGTCCAATTGGTGAGGCAGGGCCTGGTGGGCCTGATGGAACTGGAGGTATCAAGGGATCAACTGGAGCAGAAGGGAAACAGGGTCCTGAGGGAACAGAAGGGGAAAAGGGTCAGATTGGAGCACCTGGATTCTCAGGAGACCATGGGGAGATGGGCTATAATGGGTATCCTGGAGAGccaggaggcagaggagagactGGTCACAAGgGTGACCAAGGCCCAGGGGGCATGCCAGGCAGTGATGGGGAACCTGGAGAGGATGGTCCTCTTGGAGTTCCCGGGGTGATCGGCTTTCCTGGAGAGTTTGGACAAAAGGGCGCGAGAGGGGATCGTGGTGTGAGGGGACCTCTTGGGAGAGTAGGAGCTGGGGGGCCtcaaggagagaggggagatgcaGGAGTTCCAGGGAAACCAGGACCTAAAGGCCTGCAGGCCCAGCCTGGAGCCAAAGGGGAGACAGGTCCCGATGGTGATAAGGGTGGGGTTGGAAGAACTGGAGtgaagggagggaaaggagacAAGGGAAGTTTTGGAGCACATGGTGACAAAGGACAGCAAGGGGAGAGAGGTACCATCGGCCCTGATGGCATTGTTGGACGAAATGGACCCCCCGGCATCCCAGGCTCCAGAGGAGAGCCAGGTCCAGGCGGTGACCTGGGCGTCAAAGGTGGCTCTGGACCTAAAGGAGTGCCAGGTGCCCCTGGCCCTGGGCTGACAGATGAGCAGGTATTGCAGCTGTGTAAAGGAGTGGTGACAGCCCAGATCTCCCAGTATGCAGCTTCCATCCGGGCCAAGTGTTCCCAAGGCTGCCCCATCAACAACCGCACACTCATTGGGCCGCCCGGAACCAGGGGACCAACTGGAGAATCAGGCAAACCCggtaAAGCGGGCAAAGCTGGAGTCAAAGGAGCCAGGGGCATCCAAGGGGACACAGGAGTGGATGGTCAGAAGGGGgcagagggggaaagagGAACAAAAGGTCCGAAAGGAAAGGGGGGTGAGCCTGGTAAAGGTCTGCCAGGACACGATGGGCATCAAGGTCTCAGAGGGCTGCCAGGCCACCCAGCAGAGCCAAATAACGGTATGGCAGGTCCCAGAGGGCCCCGTGGTTTCACAGGCGCTTTAGGTCAGCCTGGCATGGCGGGCAACGCAGGAGTGCCCGGCTTCTGTGAGGCACGGGACTGCAGCATTCACGCGCCTGTGATGCGCAAGGAGCAGGGCCTAGTGAAGGGACCCCGCGATCTAAGCCCCAAGATCTAACCCCAACAAGGAGCTTCAGGAAAAGGTGAAGGAATGGTCAACGATGAGGGGTCATGTTGGACGGTCGCTCCATGGCAACGTTGGGGTTAATTCCATTCACATCTCAGCCATACCAGGAATTGAAGTTGACATTGAGTTTTGAACTGGGAAATGACCAATGTGTACAGCGTTGATCTTTTTGAATTTCATAGCTAATTCAATTCCTGTAATGACTGATATTGAAATGGAATTAATCCAAGCATTGTTCAATGTGGCTCACCAGTGTTGGAAGGGTTTGGTGGGACACGCTGGACTCTGCACAGGGAGATGAAGGCTCCCAATGAACTCTAATGTTTAGGCATAATTGATCACTTTTTTTTCTAGGCGAAAACAATCCTTATGAATTTTTTATGCTAAAACAAAAAATTCAATTGTCTTCCTCCAAGCAAACCTAAGTAAAGAGGCTTGAGAAACTGGCTAAAAGAAATTGGCAGAAAATGAAACTTGCAGGTGTCTCTGGCTACCAGTCAGGTTTTGTTTTTGATATGATCAACAATGCTGCGCTTACATTGAAAATAAAAAGTTATGTAAATAATTTTGTAAAGTATCGCAAGTACATGTACTGTGTGTTCTGAAATATCACTGTTTTAGATAAATTCTGTCTTACTTTTCTTAA

Function

NR:

description
collagen alpha-1(I) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593599.2 False 2547 mRNA 0.57 27 22462380 22488022
XM_036972237.1 False 3917 mRNA 0.49 27 22471363 22488022
XM_021593592.2 True 2944 mRNA 0.54 26 22473087 22488021

Neighbor

gene id symbol gene type direction distance location
LOC110514021 LOC106581291 coding downstream 1891 22457412 ~ 22460489 (-)
LOC110503922 LOC106605367 coding downstream 12680 22447092 ~ 22449700 (-)
trnae-cuc-2 NA coding downstream 15565 22446744 ~ 22446815 (-)
trnas-aga-57 NA coding downstream 16807 22445492 ~ 22445573 (-)
trnas-aga-56 NA coding downstream 18017 22444282 ~ 22444363 (-)
snrnp48 LOC106581266 coding upstream 799 22488821 ~ 22495924 (-)
LOC110514079 LOC106605359 coding upstream 11423 22499445 ~ 22506678 (-)
LOC110505130 NA coding upstream 59778 22547800 ~ 22548892 (-)
LOC110514133 LOC106581253 coding upstream 87925 22575947 ~ 22603330 (-)
LOC110514157 LOC106581233 coding upstream 120582 22608604 ~ 22611971 (-)
G235846 NA non-coding downstream 33856 22428231 ~ 22428524 (-)
G235843 NA non-coding downstream 37851 22424213 ~ 22424529 (-)
G235809 LOC106955111 non-coding downstream 96371 22365111 ~ 22366009 (-)
G235810 NA non-coding downstream 97618 22364549 ~ 22364762 (-)
G235860 NA non-coding upstream 37381 22525403 ~ 22526021 (-)
G235900 NA non-coding upstream 94803 22582825 ~ 22584854 (-)
G235916 NA non-coding upstream 111808 22599830 ~ 22600792 (-)
G235921 NA non-coding upstream 119855 22607877 ~ 22608110 (-)
LOC118946878 NA other downstream 706879 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 718969 21738845 ~ 21743411 (-)
G234621 NA other downstream 963548 21498408 ~ 21498832 (-)
G234600 NA other downstream 992435 21469661 ~ 21469945 (-)
LOC110513321 LOC106580205 other downstream 1006664 21438546 ~ 21455972 (-)
G235881 NA other upstream 85811 22573833 ~ 22574989 (-)
G237047 NA other upstream 669087 23157109 ~ 23189031 (-)
LOC110514600 ensa other upstream 1283502 23771511 ~ 23780158 (-)
G237657 LOC106605316 other upstream 1692534 24180556 ~ 24183964 (-)
G237832 NA other upstream 2033197 24521219 ~ 24521544 (-)

Expression


Co-expression Network