snrnp48 (LOC106581266)


Basic Information

Item Value
gene id snrnp48
gene name LOC106581266
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22488821 ~ 22495924 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593613.2
ctatgatgaaaattacaggcctctctcatctttttaagtgggagaacttgcacaattggtggctgactaaatacttttttgccccactgtaatgcCATTTGCTTGGTTTCTCCATTCACTTGAATCCCTTTAGACATCAATGGTATGAACAGAATAGCGTTTTGTCAAATGTTCTTaggttctctcctctgtcccctgtgTCTTCAGATGGCCATGGCCTCACCCAAGAGCGTGTTCAGAACCCCTGGGGCTGGGCTTGTACTGAGAGTACCTTTGGCCCTGTCCACACAGACCTAGTTAGCATCCAAAGCCAGAGTGACACAGGGCTACATGCCCCTGAAATGTGGATTGATGTCCCCCCACACCAGCCCTCCTTGGGTGGTGCTGATGGAGAAGAATCACCCCAGCATTGTTTAGGCAGTCAATGGAGGAGCCACAGGACAGAGGGCCAtggctgtgtttgtgtgcatggacCAAGTGGACCAGGAAGATGTTGCCACAGtttggctggttcccctctcttcAATTTTGGAAGTAAGTTGAGGAAGACAATAATGGTAGGAGTCGAGGTGGAAATAGTGGAGGAAGTAGCCTATGAGGACACAGAGACACTTGAAGTAATatcAGAAGGAGTCTATCCAAATTATTTGATGGAAACCATATTGCTGCATGATGACCAGCTTTTCGCCACCTAAACATGCATTCCTTCAAAAGTTGTTTGCAAGTGAACTTTCTGTGTTTTTAAATGTCAGCCttgtattttaaatgtattttacatttatttaaatgtagtttaaatattaaaatgtattttaaataccATTTAAATGCCTTTTTTATGTCAGTGTTATGGGAGGTTCAttaattacaattttttttaccCAATAAAATAAGAAAACCTTTGCTTGTTGTCTTGATTTGAACTTCTAATGAAGATATAGTATATGTAACTTCCAAGACCTTCTGACAGTCTACACTTGCTTTGTCCATCCAGTGCTCCAGTACTCTGCTCAAGTATGGCAAGTCTCACAGCCCACCAAGTTGAAAAAATCTAACGACATGCTACCAAAATCATCATGGGCACcacctacacctacacctacacctgGGCTTGCAAAAATCAAACGCTCCAGGCTCGTCTGCGAAGTTTGGAAGAGTTGACGGAGTTCACCGAGAACTGCCAGAGACAACTGAATGAGCTGTTCGAGACGCTGGGATGGAGACAGGACCTGGACAACGGCTCAGTTCAGGAGCCGATGGAGGTGTGCCCCTATGACCCGAACCACAGAGTGCCAAGCAGGAGCATGGAGAGACACAAAGCCACCTGCCAACTCAGCCAGATGGGATACTCCCATGAGGAACAGGCTGAGATGTATGACACCTCTCTGTATTATGAGAATGCCAGCATTACCAGCTTCACAATGGacaaacacacacagcaacaagTGATTCTACAAGCAAGAGCAAGTGCACCGTCAATTAGGACAGAGGGACTGTACAGCCAAAGTGAATACTCCACAGATCCTTCAGAAGTTCCTCAGAACCACAAGCGAGCTATCTGTGACCTTACTGTGGCAGACCGACTGGCTCTTTTTGATCACGTGACAAGGGAGGCCATTCAACAGAAGGATCAAGCTGTTGCAACCGACAACGAGGACCTCTATGTTGATTTGGTGGCCAAGCTCAAAAAGGGTAACGATCAGAACGAGCACAAGTCTCACCTGGAGCTGATGGCTGAGATGAGGGACTACAAGAGACGGCGGCAGTCTTACAGAGCCAAGAACGTCCACAACACAAAGAAGTCCTACACTGAGGTGATTCGGGAGGTAATTAATGTCCACTCTGTTGAACTGTCCAGTCagtggaaagaggaggagaggaaggaagaggttAGAGAGTCCAAACATGCCCCTCACAGGAGAAGGTCTGAGGACAGACGGTCTGCCTCCACAGAGTCCCGCCAATCTCATGTCAGCTCCAGGGATGGACACGGCTCCCACCACAAATGCCAGCGCAGCAAAGACCCCAGCCCAGAGCAGAGCCAGGAGCGCAGCCGAGAGAAGGAGagcaagaagaagagaaagagGGAATCCTGCTCTCCGGATGAGAGACTTCATGATcgaaagaagaaaaagaagaaaaagaagaaaaagGAAGAGAAGTGATTTTCAAGTTTAGTACTTTGGCTTGGAAAACCAGAGATTAGGTCAAGGAGCCAACCAAAGCTACCTTCCAATGTTCATAATAGCGTACCACTTAGAATGCACGCCTTCATACTAAGTGCTCAATTCATGGCTTCATATTAAATGGTATGCATGTGTCGATATAGTAGTTTGACTCGCAGGCAAATCTTTCTTTGTTGTAATCTGATGATATTTTAAAGCAACAGTGGAGCTCTAAACATTTGTCTTAAACAGAGGTTATTAAATGCCTGTTGTATTAGATTACAGAATGTAAATAAACTGTTAGAACACGATTCTCGGAATTCTGTTGTACATTCACGATTACCCCTGTGTTGGATGTTTAAAGTTAAAACTACATTGTGTTTGAGCTTtgaatagagaataaaagcttcATATGTGTACTTTAA
>XM_021593606.2
AGGATCAGAAGGCACTGCTGCGGAGCCCATGCACAAATCTGGCTCATCTCTAGCCTATAGACCTGCTATTATCAACTAGGGAATCAAACACGCAAAGCTATTTATTTGCCTTGATATACAGTAGAAGCCCTGATTGAGATGTATGGACAGAACCCTAACTGGTTGTGGTCGAACGGGGAGCCTCTACGCCACCATAGGCACCTGGGCAGACTTGGCTCAGCAACCCTGAGGCAatgggaggatgaggaagaaggAAAAGAGGAAGAACATGCAATTTGGACCAGGGAGCATCCAGCAATCTGTTGCTATACTACAAATGGCCATGGCCTCACCCAAGAGCGTGTTCAGAACCCCTGGGGCTGGGCTTGTACTGAGAGTACCTTTGGCCCTGTCCACACAGACCTAGTTAGCATCCAAAGCCAGAGTGACACAGGGCTACATGCCCCTGAAATGTGGATTGATGTCCCCCCACACCAGCCCTCCTTGGGTGGTGCTGATGGAGAAGAATCACCCCAGCATTGTTTAGGCAGTCAATGGAGGAGCCACAGGACAGAGGGCCAtggctgtgtttgtgtgcatggacCAAGTGGACCAGGAAGATGTTGCCACAGtttggctggttcccctctcttcAATTTTGGAATGAGGAAGACAATAATGGTAGGAGTCGAGGTGGAAATAGTGGAGGAAGTAGCCTATGAGGACACAGAGACACTTGAAGTAATatcAGAAGGAGTCTATCCAAATTATTTGATGGAAACCATATTGCTGCATGATGACCAGCTTTTCGCCACCTAAACATGCATTCCTTCAAAAGTTGTTTGCAAGTGAACTTTCTGTGTTTTTAAATGTCAGCCttgtattttaaatgtattttacatttatttaaatgtagtttaaatattaaaatgtattttaaataccATTTAAATGCCTTTTTTATGTCAGTGTTATGGGAGGTTCAttaattacaattttttttaccCAATAAAATAAGAAAACCTTTGCTTGTTGTCTTGATTTGAACTTCTAATGAAGATATAGTATATGTAACTTCCAAGACCTTCTGACAGTCTACACTTGCTTTGTCCATCCAGTGCTCCAGTACTCTGCTCAAGTATGGCAAGTCTCACAGCCCACCAAGTTGAAAAAATCTAACGACATGCTACCAAAATCATCATGGGCACcacctacacctacacctacacctgGGCTTGCAAAAATCAAACGCTCCAGGCTCGTCTGCGAAGTTTGGAAGAGTTGACGGAGTTCACCGAGAACTGCCAGAGACAACTGAATGAGCTGTTCGAGACGCTGGGATGGAGACAGGACCTGGACAACGGCTCAGTTCAGGAGCCGATGGAGGTGTGCCCCTATGACCCGAACCACAGAGTGCCAAGCAGGAGCATGGAGAGACACAAAGCCACCTGCCAACTCAGCCAGATGGGATACTCCCATGAGGAACAGGCTGAGATGTATGACACCTCTCTGTATTATGAGAATGCCAGCATTACCAGCTTCACAATGGacaaacacacacagcaacaagTGATTCTACAAGCAAGAGCAAGTGCACCGTCAATTAGGACAGAGGGACTGTACAGCCAAAGTGAATACTCCACAGATCCTTCAGAAGTTCCTCAGAACCACAAGCGAGCTATCTGTGACCTTACTGTGGCAGACCGACTGGCTCTTTTTGATCACGTGACAAGGGAGGCCATTCAACAGAAGGATCAAGCTGTTGCAACCGACAACGAGGACCTCTATGTTGATTTGGTGGCCAAGCTCAAAAAGGGTAACGATCAGAACGAGCACAAGTCTCACCTGGAGCTGATGGCTGAGATGAGGGACTACAAGAGACGGCGGCAGTCTTACAGAGCCAAGAACGTCCACAACACAAAGAAGTCCTACACTGAGGTGATTCGGGAGGTAATTAATGTCCACTCTGTTGAACTGTCCAGTCagtggaaagaggaggagaggaaggaagaggttAGAGAGTCCAAACATGCCCCTCACAGGAGAAGGTCTGAGGACAGACGGTCTGCCTCCACAGAGTCCCGCCAATCTCATGTCAGCTCCAGGGATGGACACGGCTCCCACCACAAATGCCAGCGCAGCAAAGACCCCAGCCCAGAGCAGAGCCAGGAGCGCAGCCGAGAGAAGGAGagcaagaagaagagaaagagGGAATCCTGCTCTCCGGATGAGAGACTTCATGATcgaaagaagaaaaagaagaaaaagaagaaaaagGAAGAGAAGTGATTTTCAAGTTTAGTACTTTGGCTTGGAAAACCAGAGATTAGGTCAAGGAGCCAACCAAAGCTACCTTCCAATGTTCATAATAGCGTACCACTTAGAATGCACGCCTTCATACTAAGTGCTCAATTCATGGCTTCATATTAAATGGTATGCATGTGTCGATATAGTAGTTTGACTCGCAGGCAAATCTTTCTTTGTTGTAATCTGATGATATTTTAAAGCAACAGTGGAGCTCTAAACATTTGTCTTAAACAGAGGTTATTAAATGCCTGTTGTATTAGATTACAGAATGTAAATAAACTGTTAGAACACGATTCTCGGAATTCTGTTGTACATTCACGATTACCCCTGTGTTGGATGTTTAAAGTTAAAACTACATTGTGTTTGAGCTTtgaatagagaataaaagcttcATATGTGTACTTTAA
>TU269492
AAAGCTGTTCTGCGGCTGACAGGATCAGAAGGCACTGCTGCGGAGCCCATGCACAAATCTGGCTCATCTCTAGCCTATAGACCTGCTATTATCAACTAGGGAATCAAACACGCAAAGCTATTTATTTGCCTTGATATACAGTAGAAGCCCTGATTGAGATGTATGGACAGAACCCTAACTGGTTGTGGTCGAACGGGGAGCCTCTACGCCACCATAGGCACCTGGGCAGACTTGGCTCAGCAACCCTGAGGCAatgggaggatgaggaagaaggAAAAGAGGAAGAACATGCAATTTGGACCAGGGAGCATCCAGCAATCTGTTGCTATACTACAATGTGGGCAGATGACTTGTGACTAAGAGCCTTGCCCAAACTCGGCAGGCCCATTGGCAGGCCAAAGAGACAGCAGGACCAAACACGTGATACAACGACAGACTGCAACAGAACAGCACCCAACCTTCCATCCTACCTTATGTCATCGCTTCTCACCACACCTTACTATTAtcactcctccatctcttcccttCTATCTCCTCTCCTTGCATCTCTTTATCCACATTTAGTCTTCATCTCCCCTATTCCCATTTCTTTGTATGCTCATTAAAGTGCTATCcaacatacagacatacagtggggca

Function

NR:

description
uncharacterized protein LOC109901926 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593613.2 False 2590 mRNA 0.45 12 22488821 22494016
XM_021593606.2 False 2693 mRNA 0.45 13 22488821 22495904
TU269492 True 639 lncRNA 0.47 2 22495050 22495924

Neighbor

gene id symbol gene type direction distance location
LOC110513982 LOC106581283 coding downstream 799 22462380 ~ 22488022 (-)
LOC110514021 LOC106581291 coding downstream 28332 22457412 ~ 22460489 (-)
LOC110503922 LOC106605367 coding downstream 39121 22447092 ~ 22449700 (-)
trnae-cuc-2 NA coding downstream 42006 22446744 ~ 22446815 (-)
trnas-aga-57 NA coding downstream 43248 22445492 ~ 22445573 (-)
LOC110514079 LOC106605359 coding upstream 3541 22499445 ~ 22506678 (-)
LOC110505130 NA coding upstream 51896 22547800 ~ 22548892 (-)
LOC110514133 LOC106581253 coding upstream 80043 22575947 ~ 22603330 (-)
LOC110514157 LOC106581233 coding upstream 112700 22608604 ~ 22611971 (-)
bmper LOC106581223 coding upstream 122190 22618094 ~ 22641761 (-)
G235846 NA non-coding downstream 60297 22428231 ~ 22428524 (-)
G235843 NA non-coding downstream 64292 22424213 ~ 22424529 (-)
G235809 LOC106955111 non-coding downstream 122812 22365111 ~ 22366009 (-)
G235810 NA non-coding downstream 124059 22364549 ~ 22364762 (-)
G235860 NA non-coding upstream 29499 22525403 ~ 22526021 (-)
G235900 NA non-coding upstream 86921 22582825 ~ 22584854 (-)
G235916 NA non-coding upstream 103926 22599830 ~ 22600792 (-)
G235921 NA non-coding upstream 111973 22607877 ~ 22608110 (-)
G235959 NA non-coding upstream 176371 22672275 ~ 22698611 (-)
LOC118946878 NA other downstream 733320 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 745410 21738845 ~ 21743411 (-)
G234621 NA other downstream 989989 21498408 ~ 21498832 (-)
G234600 NA other downstream 1018876 21469661 ~ 21469945 (-)
LOC110513321 LOC106580205 other downstream 1033105 21438546 ~ 21455972 (-)
G235881 NA other upstream 77929 22573833 ~ 22574989 (-)
G237047 NA other upstream 661205 23157109 ~ 23189031 (-)
LOC110514600 ensa other upstream 1275620 23771511 ~ 23780158 (-)
G237657 LOC106605316 other upstream 1684652 24180556 ~ 24183964 (-)
G237832 NA other upstream 2025315 24521219 ~ 24521544 (-)

Expression


Co-expression Network