LOC110514079 (LOC106605359)


Basic Information

Item Value
gene id LOC110514079
gene name LOC106605359
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22499445 ~ 22506678 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593645.2
AATATTATTACGTAGTTTCCGGTATTACGCCCCGACCCACCAAAAAAAATCTGTCGAACTGGCAAGGAGCATTCTAAAGGTGTCGAAAATACTCAAAGAATCTTCAAACCCCAAGAAACATAGCTGCTTCACTCTCCACCAGGATTACATCGTGATTGGACACAGGACCATCTCCCTGTCAATGACAGCTTTTTAGAGGGGAAATGTCCATGTCAACCATAGTCACTGGCTGAGCTGGACTTGAGATCACAATGATGAAGATGATCTGAGGGAGTCTTCCTCCTCAGGTGTAGGAGGCTGGCCCTGTCCTTTCCCATCCCCTTGACACACCCATTAATATGAACCATGGACCCAGGAGCAGTTGACAGTCCCGTCACCTTAGTTATCAAGGCCCCCAACCAGAAGTATGACGACCAGACAATAAACTGTTTTCTCAACTGGACGGTGGAGAAACTGAAGAGTCACATCTCAAATGTGTACCCAAGCAAGCCGTCATCCAAGGATCAGCGGCTGGTATACTCGGGCCATCTCCTCCAGGACCACCTGCAGCTGAGGGATGTCCTCAGGAAGCAAGAGGGTTATCACATGATGCACCTGGTGTGTGCCTCTCGTACCCCTCCAGCGTCGCCCACGCCGCACTGCTCCGCCCCCAGCTCTTTGATCTTTGACCCCGGCTCCAGCTCTGGGAGTTCAGACACTGCTGGCTCCACCTCCCAAGCCACAGCACCAAATGAGGACAGTCAGTCCGCCGCCTCCTCAGTAACAGGAAGTTATGATGGGCTAAGGCACCGTGGAGGCTTCCCCCAATTGAACCCTCAAAATCCTTCCTCTACTGGTATAATGCAATGGCCAGATGGGACGCAGGTCCCGGTACAGGGGGGTATGGCTGCAGGTGTGCCCCCCCACCCCATGTACATGCCCATGCAGGTCCTCTGGTGGCAGCAGATGTATGCACACCACTACTACATGCAATATCAAGCAGCAGTGGCGGCCTCACagctcccctccacccctccctcctcccccagtcCCACCCACTCCCCCCAACCCGCACAGCCAAATGAAGCTCCGCCTCCCCTGGGGCCTAACCCCGCCCCTAACCCTATCCAAGAGGACAGGCCGGCCAATCCCAATATCCAGATGAATGCCCAGGGCGGGGCCGTGCTAAATGAGGACGAATTGAACCGTGATTGGCTGGACTGGATTTACACGGTCTCCCGCGCCGCCATTTTGCTCAGCATCTTATATTTttactcctcctttggccgcttCGTCATGGTGATAGGCGCCATGCTGCTCGTCTTTTTGCACAGGGCTGGTTGGTTCCCTTTTAGGCCAGAGCTGCAGAACCCCGGAGGAGGAGGAGCGGGGTTAGCTCATCAGGACGAGGCAGAGCGACACCAGGACATCCAGGAGATGGAGCGGATGATGGATGAAGggctggaggatgaggagggcgACAGTGGAGAGGAAGGCCCAGAGGACCCGGCAGCCCCCGCTGCCCCCCGCCACCACGGCTTCCTGGCCTCCACCTGGTCCTTCATCAGCACCTTCTTCACCTCCCTCATCCCAGAGGGACCCCCCCACCCAGCCAACTAAACCAGGGAGGGAgaacctccctcctccccagcaACAACCTCCCATGCTGCCAACTACCAGACTGTAAATAGAGCTGCAGTGTGGGAGAAGTCTTGAATAAATCAATGAACAAGCTAACATGTTATGCCATGTTAAACAAGCTAACAATGCTTTATATTCCAGAGGCTTCTCTGATTTCATCATAcaaactgataca

Function

NR:

description
homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593645.2 True 1795 mRNA 0.55 9 22499445 22506678

Neighbor

gene id symbol gene type direction distance location
snrnp48 LOC106581266 coding downstream 3541 22488821 ~ 22495924 (-)
LOC110513982 LOC106581283 coding downstream 11423 22462380 ~ 22488022 (-)
LOC110514021 LOC106581291 coding downstream 38956 22457412 ~ 22460489 (-)
LOC110503922 LOC106605367 coding downstream 49745 22447092 ~ 22449700 (-)
trnae-cuc-2 NA coding downstream 52630 22446744 ~ 22446815 (-)
LOC110505130 NA coding upstream 41122 22547800 ~ 22548892 (-)
LOC110514133 LOC106581253 coding upstream 69269 22575947 ~ 22603330 (-)
LOC110514157 LOC106581233 coding upstream 101926 22608604 ~ 22611971 (-)
bmper LOC106581223 coding upstream 111416 22618094 ~ 22641761 (-)
bbs9 bbs9 coding upstream 137163 22643841 ~ 22848755 (-)
G235846 NA non-coding downstream 70921 22428231 ~ 22428524 (-)
G235843 NA non-coding downstream 74916 22424213 ~ 22424529 (-)
G235809 LOC106955111 non-coding downstream 133436 22365111 ~ 22366009 (-)
G235860 NA non-coding upstream 18725 22525403 ~ 22526021 (-)
G235900 NA non-coding upstream 76147 22582825 ~ 22584854 (-)
G235916 NA non-coding upstream 93152 22599830 ~ 22600792 (-)
G235921 NA non-coding upstream 101199 22607877 ~ 22608110 (-)
G235959 NA non-coding upstream 165597 22672275 ~ 22698611 (-)
LOC118946878 NA other downstream 743944 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 756034 21738845 ~ 21743411 (-)
G234621 NA other downstream 1000613 21498408 ~ 21498832 (-)
G234600 NA other downstream 1029500 21469661 ~ 21469945 (-)
LOC110513321 LOC106580205 other downstream 1043729 21438546 ~ 21455972 (-)
G235881 NA other upstream 67155 22573833 ~ 22574989 (-)
G237047 NA other upstream 650431 23157109 ~ 23189031 (-)
LOC110514600 ensa other upstream 1264846 23771511 ~ 23780158 (-)
G237657 LOC106605316 other upstream 1673878 24180556 ~ 24183964 (-)
G237832 NA other upstream 2014541 24521219 ~ 24521544 (-)

Expression


Co-expression Network