LOC110514095 (LOC106581260)


Basic Information

Item Value
gene id LOC110514095
gene name LOC106581260
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22513124 ~ 22544099 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593647.2
TGGAAATACAGATGGCCATCACTTCCGGATTTGCAGTACGCACGTGAGGCAGTTAGAAGCACGTTTGTTTTGCAACTATTATATTTATCCAGATGAGTTAACAAAGGCCCTTCATTAACTGACTGGAAATCAAGTCGTTGGAAGCAGATATCTCACAGATAGGAAAAGATGGAGGGGAAGGAGCCAAAGAAGGAACAGAAGCGGCACCAGCAGAAGCACAGCGGGCCCAAGGCGGAGAGGAAGAAGAGCAGGAAGCAGCTGGGAACTCCAGCCGGAGATGACGAGCGCAAGAGGAACCCCAAAGCGTTTGCGGTCCAGTCAGCAGTGCGCATGGCCAAAACCTTCCACAGAGCCCAGGACCTAAAGGCCAAGAAACATCACATACCCCTGGTGGACCGCACCCCTTTAGAGCCTCCCccgatagtggtggtggtggtaggaccCCCCAAGGTGGGCAAGAGTACCCTCATCCGCTGCCTGATCAAAAACTTCACCCGGCAGAAACTAGCGGACATCTGCGGGCCTGTGACCATTGTTTCTGGAAAGAAGAGGCGTCTTACCTTCATTGAGTGTAGCAATGACATCAACACAATGATTGACTTGGCAAAGGTTGCTGACCTGGTGCTGATGCTCATTGACGCCAGCTTCGGCTTTGAAATGGAGACCTTTGAGTTCCTCAACATCTGCCAGGTGCACGGCTTCCCGCGCATCATGGGCGTGCTCACCCACCTGGACTCGTTCCGCAACAACAAGGCCCTTCGCAAGACCAAGAAGCGGCTCAAGCATCGCTTCTGGACTGAGGTCTACCAGGGTGCCAAACTCTTCTACCTGTCCGGTATGGTGTACGGAGAGTACCAGACCCAGGAGGTCAAGAACCTGGGCCGCTTCATCTCCGTCATGAAGTTCCGCCCGCTGGTGTGGCAGCAATCTCATCCCTACGTCGTGGCAGACCGCATGGAGGATTTGACGGACCCCGAGATGGTGAGGGTGGACCCCAAGTGTGATCGTACTGTATCTCTCTATGGTTACCTGAGGGGGACATACTTGAAGAATAAAGGCCAGGTCCATATCCCTGGTGTGGGGGACTTTGCGGTGGCAGACATCAGCTTCCTGCCAGACCCCTGCGCTCTGCCTGAAGCTCAGAAGAAGAGGGCGCTGAACGAGAAGGAGCGGCTGCTCTACGCTCCCATGGCAGGGGTCGGGGGGGTCGTCTACGATAAGGACGCAGTGTACATCGACCTGCCCGGCGGCCACGTCAATCAAGAACAGGAGGAGGTCCGTCCCACCACAGAGTTGGTCCAATCCCTCATCAGTACACACACCACCCTGGATGCCAAGATGGCCGCCAGCAAAGTGTCACTGTTCACAGGGGCGGCTGCCCTGACCCCcggggaagtggaggaggaggaggaggagaatggGCTGACGTCAGGACCCCAGGAGAGCCGAGTCTGGGACCctgagacgcagagagagaggaggaaggctgtCTTCACTGAAGAGGAAGATGACGATGATGACAGCGAGGGTAGCAGTgaagaagagggggatgaggaaggagagtctgaagaagaggatgaggaagatgagGGGGGAAACAaaagggaagaagaagaagaagaagaaacggTTTTGAAGAACAAGGCAAAGGACAAAACTGAACCAAAAGAGAAGCAAGGAATAAAGACCATCCCTCCGGCGAAGAGACAGAAGATGGAGGAAAGGAAAGTGGAGAAAGAGCCAGTGGTGGAGGTACCTGCCTTTGCAGACAGTGAGGATGAGCTGGAaatgagtgaggaggaggaaggggggaagggagagcaggagagtgaaggagaggaaagCGATTCGGAGGgggaagaagatgaagaagacaGTGCAGTGGAAAGGGGTGATCTCAAACCGATAGACTCGGGTCATTGCTCGGAGGAGGAGGATGCGAGTGATTCAATAGAAGATGACTGCGAAACCAATGTCTCGGGCAAAGAAGGCAAGAAGTCGAATGCCACCTCCAAAAtggaagaggaagatgaggagatggagggaggagagctgTGCTATGAAAGTGCAGGGTCACTGCGGTGGAAGGAGGGCCTGCAACAGAAAGCGTCGGAGGCGTTTCTACGGCAACAGCGCGCCGCCCCCAACCTGCGTAAACTGGTGTATGGCACAGTGGCAGAGGATGATGGTGATgggggggaggatgaggaggagctgGGAGGGCTGTTTCGAGTCAGCCGCCCCGAGAAGGGCAAGAAGCATCGTGCGGACGGCGTGGACTGCTCCCGTTTTGACCCCGATGCTGCTCGCAATTGGGACCTGGAAGAGATGCTGGACTCGATACGGGACTGTTTTGTTACGGGGAAATGGGAAGACGATCAAGATGCTGCTACATTGCTGAAAGAGGATGAGGAGCTGTATGGCGAATTTGAGGACTTGGAGACGGGGGAAGTGCACAAGGGGAAAGCTGCCAAGCAGAAGGACCAAGCCAAGGAAGaaagtgatgatgatgaggaggaggaggaggaggagaagctgaTGAATGTGGACGACGAGACCCAGAAGAACAAGCGTCTGGAGAAGAAACGGCGGCTGAAGGAGCGTTTCGACACAGAGTACGACGACGGAGACGCCACCTACTTTGACGACCTCAAGGAGGAGATGCAAAAACAGGCAGAGCTGAACCGGGCTGAGTTTGAGGACGTGGATGACGAGACACGGGTCCAGTACGAGGGCTTCCGGCCTGGCATGTATGTGCGTGTGGAGATCCCCTCCCTGCCCTGCGAATTTGTCACCAACTTTGACCCCCACTATCCCATCATCCTCGGGGCTCTAGGTGCCAGCGAGGGGAACGTAGGCTACCTGCAGATGCGGTTAAAGAAACATCGATGGCACAGCCGGATCCTGAAAACGCGCGACCCTCTCATCCTGTCCCTGGGCTGGCGTCGCTTCCAGACCATCCCCCTATACCACATCGAGGACCACAACGGGCGCCACCGCCTGCTCAAGTACACACCGCAGCACATGCACTGTGGTGCCACCATCTGGGGTCCCATCACACCTCAGGGTACTGGCTTCCTGGCTGTGCAGTCAGTCGCAGGAACTAAGACCAGTTTCCGCATCGCAGCTACAGGAGTCGTCCTTGACCTGGACAAATCTGTGACCATAGTCAAAAAGCTCAAGCTGATTGGCTACCCATACAAGATCTACAAGAACACATCATTCATCAAGGGAATGTTCAACACCGTGCTGGAGGTGGCGAAATTTGAAGGGGGCTCCATCCGAACAGTCAGTGGGGTCAGAGGTCAAATTAAGAAGGCCTTGTCAACGCCGGCGGGAGCCTACAGAGCCACGTTCGAAGACAGGCTGCTGATGAGTGacattgTGTTCCTGCGCTCCTGGTACCCGGTGTCAGTCCCTCAGCTCTACAACCCCGTGACCTCCCTGCTGATGCCAGCGGGCCAGAAGGACAGTTGGTCGGGCATGAGAACAGTGGGCCAGCTCAAACACGACATGGGGGTCCGCAACAAGCCCAACACAGACTCACTGTACAAGCCGGTGGTGCGAGCGCAGCGCCACTTCAACAAGCTGCACATCCCCAAGGAGCTGCAGAAGGCATTGCCCTTCAAGAGCAAGCCCAAACAGGACCAGCCCAAGGGCAAGACACCCAAGGACCTCCAGAGGCCCGCTGTCATACGGGAGCCCCACGAGAGGAAGGTGGCGGCGCTGCTCAATGCACTGAGCACGGTGCACAACTACAAGAGCAAGAAAGCGCACACGGCGCAGCATGCTAAGCACAAGGGCTTCCTGCGGCAGCGGGACAAGGCGGAGGAGGACAAGCTCAAGAGGCAGAAGGAGGCAAAGAAGAAGCTTTACCGTATGATGGGCCAGAAGGAAAAGAAGAGTCAGAGGTCCAGTCTAAAAGGGGCGCCGCTTGATGACTGATTTGTAATTCAATATGACTTCTTAAAGACCAGTGTAATAACCAGTGTTTCGGCCTGCCAATGGAATAATCCTCTGTTTAAGCATAATCTGTTGGGCTGCAGTGGAGTAGGGTGAAattgcccctagatgctgatcttgggtcagtttagcatttccccGTTAATGgataaagggatactttgggattttggtaaTGAAGCCCTTTGTCTACTTCCCTATAGTCAGAAACTCATTCATGGATACgatttgtatgtctctgcatccagtatgaaggcaagattgggggaggggaagcttatcctagatctgtgccaaGGGGAATCTTCACCCAGAGGGTCTGCAGTACTGGGGTAGGAGACCCCAGTACTGCAGGAATGGATGAACATCCTTCAGCTTCTGTAGCCTGGTTGTGTAATGTGGTTTTTCAACCCCAGTTATTGGCACCTCATTAAGAGTGGTTCCATAGAGGAACTAGAAAGAACTGTATATTAGTCATATATTGATCACTTGTCTAGCTTCAATCTTGCGTGgtgttttaataaaaaataaattacagAAATAG
>XM_021593653.2
GAAATACAGATGGCCATCACTTCCGGATTTGCAGTACGCACGTGAGGCAGTTAGAAGCACGTTTGTTTTGCAACTATTATATTTATCCAGATGAGTTAACAAAGGCCCTTCATTAACTGACTGGAAATCAAGTCGTTGGAAGCAGATATCTCACAGGAAAAGATGGAGGGGAAGGAGCCAAAGAAGGAACAGAAGCGGCACCAGCAGAAGCACAGCGGGCCCAAGGCGGAGAGGAAGAAGAGCAGGAAGCAGCTGGGAACTCCAGCCGGAGATGACGAGCGCAAGAGGAACCCCAAAGCGTTTGCGGTCCAGTCAGCAGTGCGCATGGCCAAAACCTTCCACAGAGCCCAGGACCTAAAGGCCAAGAAACATCACATACCCCTGGTGGACCGCACCCCTTTAGAGCCTCCCccgatagtggtggtggtggtaggaccCCCCAAGGTGGGCAAGAGTACCCTCATCCGCTGCCTGATCAAAAACTTCACCCGGCAGAAACTAGCGGACATCTGCGGGCCTGTGACCATTGTTTCTGGAAAGAAGAGGCGTCTTACCTTCATTGAGTGTAGCAATGACATCAACACAATGATTGACTTGGCAAAGGTTGCTGACCTGGTGCTGATGCTCATTGACGCCAGCTTCGGCTTTGAAATGGAGACCTTTGAGTTCCTCAACATCTGCCAGGTGCACGGCTTCCCGCGCATCATGGGCGTGCTCACCCACCTGGACTCGTTCCGCAACAACAAGGCCCTTCGCAAGACCAAGAAGCGGCTCAAGCATCGCTTCTGGACTGAGGTCTACCAGGGTGCCAAACTCTTCTACCTGTCCGGTATGGTGTACGGAGAGTACCAGACCCAGGAGGTCAAGAACCTGGGCCGCTTCATCTCCGTCATGAAGTTCCGCCCGCTGGTGTGGCAGCAATCTCATCCCTACGTCGTGGCAGACCGCATGGAGGATTTGACGGACCCCGAGATGGTGAGGGTGGACCCCAAGTGTGATCGTACTGTATCTCTCTATGGTTACCTGAGGGGGACATACTTGAAGAATAAAGGCCAGGTCCATATCCCTGGTGTGGGGGACTTTGCGGTGGCAGACATCAGCTTCCTGCCAGACCCCTGCGCTCTGCCTGAAGCTCAGAAGAAGAGGGCGCTGAACGAGAAGGAGCGGCTGCTCTACGCTCCCATGGCAGGGGTCGGGGGGGTCGTCTACGATAAGGACGCAGTGTACATCGACCTGCCCGGCGGCCACGTCAATCAAGAACAGGAGGAGGTCCGTCCCACCACAGAGTTGGTCCAATCCCTCATCAGTACACACACCACCCTGGATGCCAAGATGGCCGCCAGCAAAGTGTCACTGTTCACAGGGGCGGCTGCCCTGACCCCcggggaagtggaggaggaggaggaggagaatggGCTGACGTCAGGACCCCAGGAGAGCCGAGTCTGGGACCctgagacgcagagagagaggaggaaggctgtCTTCACTGAAGAGGAAGATGACGATGATGACAGCGAGGGTAGCAGTgaagaagagggggatgaggaaggagagtctgaagaagaggatgaggaagatgagGGGGGAAACAaaagggaagaagaagaagaagaagaaacggTTTTGAAGAACAAGGCAAAGGACAAAACTGAACCAAAAGAGAAGCAAGGAATAAAGACCATCCCTCCGGCGAAGAGACAGAAGATGGAGGAAAGGAAAGTGGAGAAAGAGCCAGTGGTGGAGGTACCTGCCTTTGCAGACAGTGAGGATGAGCTGGAaatgagtgaggaggaggaaggggggaagggagagcaggagagtgaaggagaggaaagCGATTCGGAGGgggaagaagatgaagaagacaGTGCAGTGGAAAGGGGTGATCTCAAACCGATAGACTCGGGTCATTGCTCGGAGGAGGAGGATGCGAGTGATTCAATAGAAGATGACTGCGAAACCAATGTCTCGGGCAAAGAAGGCAAGAAGTCGAATGCCACCTCCAAAAtggaagaggaagatgaggagatggagggaggagagctgTGCTATGAAAGTGCAGGGTCACTGCGGTGGAAGGAGGGCCTGCAACAGAAAGCGTCGGAGGCGTTTCTACGGCAACAGCGCGCCGCCCCCAACCTGCGTAAACTGGTGTATGGCACAGTGGCAGAGGATGATGGTGATgggggggaggatgaggaggagctgGGAGGGCTGTTTCGAGTCAGCCGCCCCGAGAAGGGCAAGAAGCATCGTGCGGACGGCGTGGACTGCTCCCGTTTTGACCCCGATGCTGCTCGCAATTGGGACCTGGAAGAGATGCTGGACTCGATACGGGACTGTTTTGTTACGGGGAAATGGGAAGACGATCAAGATGCTGCTACATTGCTGAAAGAGGATGAGGAGCTGTATGGCGAATTTGAGGACTTGGAGACGGGGGAAGTGCACAAGGGGAAAGCTGCCAAGCAGAAGGACCAAGCCAAGGAAGaaagtgatgatgatgaggaggaggaggaggaggagaagctgaTGAATGTGGACGACGAGACCCAGAAGAACAAGCGTCTGGAGAAGAAACGGCGGCTGAAGGAGCGTTTCGACACAGAGTACGACGACGGAGACGCCACCTACTTTGACGACCTCAAGGAGGAGATGCAAAAACAGGCAGAGCTGAACCGGGCTGAGTTTGAGGACGTGGATGACGAGACACGGGTCCAGTACGAGGGCTTCCGGCCTGGCATGTATGTGCGTGTGGAGATCCCCTCCCTGCCCTGCGAATTTGTCACCAACTTTGACCCCCACTATCCCATCATCCTCGGGGCTCTAGGTGCCAGCGAGGGGAACGTAGGCTACCTGCAGATGCGGTTAAAGAAACATCGATGGCACAGCCGGATCCTGAAAACGCGCGACCCTCTCATCCTGTCCCTGGGCTGGCGTCGCTTCCAGACCATCCCCCTATACCACATCGAGGACCACAACGGGCGCCACCGCCTGCTCAAGTACACACCGCAGCACATGCACTGTGGTGCCACCATCTGGGGTCCCATCACACCTCAGGGTACTGGCTTCCTGGCTGTGCAGTCAGTCGCAGGAACTAAGACCAGTTTCCGCATCGCAGCTACAGGAGTCGTCCTTGACCTGGACAAATCTGTGACCATAGTCAAAAAGCTCAAGCTGATTGGCTACCCATACAAGATCTACAAGAACACATCATTCATCAAGGGAATGTTCAACACCGTGCTGGAGGTGGCGAAATTTGAAGGGGGCTCCATCCGAACAGTCAGTGGGGTCAGAGGTCAAATTAAGAAGGCCTTGTCAACGCCGGCGGGAGCCTACAGAGCCACGTTCGAAGACAGGCTGCTGATGAGTGacattgTGTTCCTGCGCTCCTGGTACCCGGTGTCAGTCCCTCAGCTCTACAACCCCGTGACCTCCCTGCTGATGCCAGCGGGCCAGAAGGACAGTTGGTCGGGCATGAGAACAGTGGGCCAGCTCAAACACGACATGGGGGTCCGCAACAAGCCCAACACAGACTCACTGTACAAGCCGGTGGTGCGAGCGCAGCGCCACTTCAACAAGCTGCACATCCCCAAGGAGCTGCAGAAGGCATTGCCCTTCAAGAGCAAGCCCAAACAGGACCAGCCCAAGGGCAAGACACCCAAGGACCTCCAGAGGCCCGCTGTCATACGGGAGCCCCACGAGAGGAAGGTGGCGGCGCTGCTCAATGCACTGAGCACGGTGCACAACTACAAGAGCAAGAAAGCGCACACGGCGCAGCATGCTAAGCACAAGGGCTTCCTGCGGCAGCGGGACAAGGCGGAGGAGGACAAGCTCAAGAGGCAGAAGGAGGCAAAGAAGAAGCTTTACCGTATGATGGGCCAGAAGGAAAAGAAGAGTCAGAGGTCCAGTCTAAAAGGGGCGCCGCTTGATGACTGATTTGTAATTCAATATGACTTCTTAAAGACCAGTGTAATAACCAGTGTTTCGGCCTGCCAATGGAATAATCCTCTGTTTAAGCATAATCTGTTGGGCTGCAGTGGAGTAGGGTGAAattgcccctagatgctgatcttgggtcagtttagcatttccccGTTAATGgataaagggatactttgggattttggtaaTGAAGCCCTTTGTCTACTTCCCTATAGTCAGAAACTCATTCATGGATACgatttgtatgtctctgcatccagtatgaaggcaagattgggggaggggaagcttatcctagatctgtgccaaGGGGAATCTTCACCCAGAGGGTCTGCAGTACTGGGGTAGGAGACCCCAGTACTGCAGGAATGGATGAACATCCTTCAGCTTCTGTAGCCTGGTTGTGTAATGTGGTTTTTCAACCCCAGTTATTGGCACCTCATTAAGAGTGGTTCCATAGAGGAACTAGAAAGAACTGTATATTAGTCATATATTGATCACTTGTCTAGCTTCAATCTTGCGTGgtgttttaataaaaaataaattacagAAATAG

Function

NR:

description
ribosome biogenesis protein BMS1 homolog

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K14569 BMS1; ribosome biogenesis protein BMS1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593647.2 False 4507 mRNA 0.54 22 22513124 22544099
XM_021593653.2 True 4501 mRNA 0.54 22 22513126 22544099

Neighbor

gene id symbol gene type direction distance location
LOC118947118 NA coding upstream 26608 22482472 ~ 22488203 (+)
LOC110514034 NA coding upstream 40985 22460524 ~ 22472917 (+)
LOC110513964 LOC106605368 coding upstream 71659 22430621 ~ 22441465 (+)
LOC110513938 plekhf2 coding upstream 108307 22376761 ~ 22404817 (+)
LOC110513878 LOC106581338 coding upstream 155941 22341744 ~ 22357183 (+)
LOC110514114 can7 coding downstream 13023 22557122 ~ 22575110 (+)
LOC110514168 LOC106581241 coding downstream 67937 22612036 ~ 22618089 (+)
LOC110514282 LOC106581183 coding downstream 325641 22869740 ~ 22893776 (+)
LOC110514335 LOC106581155 coding downstream 575284 23119383 ~ 23133074 (+)
smarcc1a LOC106605342 coding downstream 666319 23210418 ~ 23227568 (+)
G235495 LOC106581291 non-coding upstream 52658 22459160 ~ 22460466 (+)
G235496 NA non-coding upstream 54034 22457195 ~ 22459090 (+)
G235484 NA non-coding upstream 71041 22441825 ~ 22442083 (+)
G235450 NA non-coding upstream 89018 22366840 ~ 22424106 (+)
G235545 NA non-coding downstream 35379 22579478 ~ 22579807 (+)
G235563 NA non-coding downstream 61804 22605903 ~ 22606114 (+)
G235564 NA non-coding downstream 62286 22606385 ~ 22606585 (+)
G235569 NA non-coding downstream 129426 22673525 ~ 22685509 (+)
G235426 LOC106581355 other upstream 208218 22303641 ~ 22304906 (+)
LOC110503910 LOC106580557 other upstream 445044 22057484 ~ 22068080 (+)
kiaa0319 LOC106580477 other upstream 493140 22017579 ~ 22037490 (+)
G234340 LOC106580151 other upstream 1226122 21286726 ~ 21287002 (+)
G235571 NA other downstream 128637 22672736 ~ 22698834 (+)
G236271 LOC106581124 other downstream 605053 23144516 ~ 23191853 (+)
G236301 NA other downstream 654753 23198852 ~ 23199075 (+)
G236370 LOC106581434 other downstream 802781 23346880 ~ 23349378 (+)

Expression


Co-expression Network