LOC110514133 (LOC106581253)


Basic Information

Item Value
gene id LOC110514133
gene name LOC106581253
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22575947 ~ 22603330 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593671.2
ATCATCACTTCCTCAGTGGCTCGGTATTGGACGCAGACAGAGTGCTGCTATGTCAATTGACATACAAGACGATTATCACTCTTTTGTCGTTCAATGACCTGTATAGCGCTTTGATATAGATATAAATATTTCAAACATCGTTTTTATCATCGCTAACGTTGCAGTGTGATTGGGCGTGTTCGTGAAACTCCTGTCACGCGGTTAGAGCGTCCCTTGGAAATTGGCTTTGTTCGCTCCGACAGTACACAGTCAGTCTGTCTGCGTTATCATCCAGAATGGACCATTTGGAGAAGGAAAATAGGTCTGACGAAGATTCGGAATACGAAGAAGAGGAGGTGGACCCTAGAATTCAGGGAGAACTGGAGAAACTCAACCAGTCCACAGATGACATCAACAGATGTGAGACACAACTGGAGGATGCCAGGCAGAAGTTCCGCTCGGTGCTGGTTGAGGCCACGGTGAAGCTGGATGAGCTGGTCAAGAAGATTGGGAAGGCGGTGGAGGAGTCCAAACCCTACTGGGAGGCCcggagagtggccagacagGCTCAGCTGGAGGCCCAGAGAGCCACCCAGGACTTCCAGAGGGCCACGGAGGTGCTGCGTGCGGCCAAGGAGACCATCGCCCTGGCAGAGCAGAGGCTCCTGGAGGAGGACACCAGGCAGTTTGACTCAGCCTGGCAGGAGATGCTCAACCACGCCACCCAGAGGGTGATGGAGGCGGAGCATACAAAGACGCGGAGTGAGCTGGTGCACAAGGAGACGGCAGCCAAGTACACGGCAGCCATGGGCCGCATGAAACAGCTGGAGAAGAAACTCAAACGCACCATCAACAAGTCCAAACCTTACTTTGAGTTGAAGGCAAAGTACTACCTACAGCTTGAGcaccTAAAGAAGAACGTGGATGAGTTGCAGGCCAAGCTGAGCCAGGCTAAAGAAGGGTACAAGACGGCTCTGAGAAACCTGGAGATGATCTCAGACGAGATCCACGAACGCCGACGCAACTCTGCCATGGGCCCCCGGGGCCGGGGCGTGGGCGCCGATGGCGACAGTGTCGCAGTGGATGACATCGCCAGCTTCAAGATGGAGTCAGATGGCATCTCCAtgACGTCCGAGTCGTTTGAGGATGAGACCTGCAGCAGCAGTGCCATGTCAGAGGAGGACTCAGAGACCCACTCCACCTGCAGCCTGgtctcctcctcccactcccccAACAGCCTCCAGGACCTCCCCTCGCCCTGTCCCTTTGCCAGCTCTTCCTCGCCCTCGccctgcccctcctcctcctcttctcctgctccCTCCTCACGCCCCTGCAGTCTGGACCTTCCCAGCCCAGTCTCGCTGTCTGACTTTGGCCTCATCTCTCCTGTCCTGGGACCACGCAGCGAGTGTAGCGGGGCGTCATCACCTGAGTGTGAcctggagagaggtgacAGAGCAGAGGGAGCGGAGGGTGAGCTGGACAATACTGTAAACAACAACAGCACCACCGTCCCAAACACCAAGAAGACCACGGGCCTGGAGGGCCGCCTCAGCTTCCTGTCTCTTCGACGCTCGCGCAACGACAGCACCAAGAACGCCAAGCGCGAACGTCAAAGCCGTTCCCAGACCCCCACCCAAACTGTGGTTCTGATCAACGGGGTGTGATGAGGAAAGCTAATCCACAAGCTAACCCCATCACCGGCTTTGTGTGCCAACGTGCTGTATTGCCAGtaaccacacacacattccattCTACCCCATGAACTAATACTGGCTAAGTAAACAGAAAGTGGCTCAGTATGAGATGCTATGAACTAAAtggtcagtgtatatacagtTCATATGGATTATGATGAGAAGAGACTTAAGACCCAACCCAGGGTGAGTGATGTCATGAAACCACCACTTCCTATAGAAAGGACCTTTCACCCTTTGACCTCCCTCCCATAGCGTTGAGACCTCAGTCAGATTGGCTTCCCATAATTCCCTACTGTACTCCACACACATTAAGGACAGTGCTGGCTAACATCCTATGGGTGGGGGCCCATGGTATATGAGGGGAAATGGGACAAAGTGTTTTTTTTACTGTGATATTCTCCCTGAGAGGGAGCTGCACTTCTAGACAAGATGTGATTCTATTGTTGGTAAATGAAAGAATGAACTCCTAGCTTCGACTATTAAAAATGGGGATTATTTATAAAACCTGATGTCTCAGTGAATGTGCCACCTGTTTTACCATTACAGAAATTTGTCAAATACAAAACATTGATAGCAATATGTGTTATGCTTTTGTAAAAGAAGAGCACGCATGAGGCCAAGATTTAAAGTCAAGATTTCTAAAAAGAAATAAGTACATTTATGGAGTTGAAGTTTTGTGAATAACCCTCATAACTTGTAATATTACTCTGCTATATCCTCTCTCAGATACTTGACATGTGAATACTCTCACCATTATGTAATCCTGTGTACGGCTTATAGAGCCTATGGCAACTGCTTTGTTACCATGGAGACGTAACACCCCCCTGGCTGGTATCTCTTCGGACAGCCTGTGCATTTGTCCAATAGGGGTCTTCAGAATTGGACTTAAAATAACTGTATTCTATTGCACAACTAATTTCCCAGTGAGCTAACTGTGAATCCATCTCACCTGCAGTACACATAAAGCTGGACTTGGAATCTGATTGAACGAGAGTATAATAATTGTGTGGGGTGAGGCTACAGTAGATATACCCTCCCCTCTTTGCTCCCTCCATCCTGTGGTTCTTCGGTGCCAGGGAAATGGGCCTCCAGACACTGTCACCCCCTCTAgccctccttccatccatctccctGTCATGGCATCCCCAATGGCCCGGTACTGAGGGACAACATCCACCCACGGACGGTAACACTAAGAACTGAGCAATAGCGCAAGGACAGAACTTTTGATAACCATATCTGCCCATGGACACATAGAGTTCATATAGAGTTCTCTGTAACGGAATGCAAATGGCCAGCCTGGTAATTCTCAGAATCTGAGGATGGTTTTGTCTTGGACCAATCTTGAGGATAAAGTGAAACTAGATGACTGAATGAAACTGATGGTGAAGAATGATGAGGCCTTTTGTGGAAACTGACAGAATAATTGATGAGTGTTGTGATTTCTGATGGACAGTATCAGCTACAGTAAGTTGTAGATCCATATTGGCTAAAGTGGCACACAGTAGACTGTCAATGTTTGTGAGGCCTAGTCGTCTGTCTCAAATAGTGTTAAATTGTCTTCCTCTCCTGGTCTCCTTATGCTCCATGGCCACATGGGAAAGGTATTTGGTCACTGAGTTATGAGAAAAGCAAGCTATTGCACAAGCGTATGCAGTCTATTTGTTATTGTGAACGCTCCAGTCTATGTATGTAGTGTACGTGTACAAATGTAATGATGTGTCGATGTTTATCTCTGTCACCCTCCGCTGTGGAATATAAGGATATGACCATGAACAGTCCTTGTCATAGCCGTTTTCTTCCATTATGTTAAGAGTAACTTTCCATTGTGTCTCCAGTTTATGTGCCTGTTTTCTGAAAATAATCCAATAAACTGATGTTCACTGCAGTAA

Function

NR:

description
SH3 domain-binding protein 5-like

GO: NA

KEGG:

id description
K23739 SH3BP5; SH3-domain binding protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593671.2 True 3574 mRNA 0.49 9 22575947 22603330
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110505130 NA coding downstream 27055 22547800 ~ 22548892 (-)
LOC110514079 LOC106605359 coding downstream 69269 22499445 ~ 22506678 (-)
snrnp48 LOC106581266 coding downstream 80043 22488821 ~ 22495924 (-)
LOC110513982 LOC106581283 coding downstream 87925 22462380 ~ 22488022 (-)
LOC110514021 LOC106581291 coding downstream 115458 22457412 ~ 22460489 (-)
LOC110514157 LOC106581233 coding upstream 5274 22608604 ~ 22611971 (-)
bmper LOC106581223 coding upstream 14764 22618094 ~ 22641761 (-)
bbs9 bbs9 coding upstream 40511 22643841 ~ 22848755 (-)
trnap-agg-7 NA coding upstream 245894 22849224 ~ 22849295 (-)
LOC110503928 LOC106581194 coding upstream 246175 22849505 ~ 22866403 (-)
G235860 NA non-coding downstream 49926 22525403 ~ 22526021 (-)
LOC110503922 LOC106605367 non-coding downstream 127722 22447092 ~ 22449700 (-)
G235846 NA non-coding downstream 147423 22428231 ~ 22428524 (-)
G235843 NA non-coding downstream 151418 22424213 ~ 22424529 (-)
G235921 NA non-coding upstream 4547 22607877 ~ 22608110 (-)
G235959 NA non-coding upstream 68945 22672275 ~ 22698611 (-)
G235938 NA non-coding upstream 78939 22682269 ~ 22685521 (-)
G235962 NA non-coding upstream 86561 22689891 ~ 22691471 (-)
G236003 NA non-coding upstream 165836 22769166 ~ 22770663 (-)
G235881 NA other downstream 958 22573833 ~ 22574989 (-)
LOC118946878 NA other downstream 820446 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 832536 21738845 ~ 21743411 (-)
G234621 NA other downstream 1077115 21498408 ~ 21498832 (-)
G234600 NA other downstream 1106002 21469661 ~ 21469945 (-)
G237047 NA other upstream 553779 23157109 ~ 23189031 (-)
LOC110514600 ensa other upstream 1168194 23771511 ~ 23780158 (-)
G237657 LOC106605316 other upstream 1577226 24180556 ~ 24183964 (-)
G237832 NA other upstream 1917889 24521219 ~ 24521544 (-)
LOC110515154 LOC106605289 other upstream 2166232 24767049 ~ 24799511 (-)

Expression

LOC110514133(LOC106581253) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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LOC110514133(LOC106581253) Expression in each Bioproject

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LOC110514133(LOC106581253) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network