LOC110514157 (LOC106581233)


Basic Information

Item Value
gene id LOC110514157
gene name LOC106581233
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22608604 ~ 22611971 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593683.2
ACACCGACAAATCAGCATATTTACTACATTAGAATTAGTAACGATGTATTATTAGCTATTAGTATAATAATACGATTTTCACTCACACGAATAAGTACAACGTTTTTACTGACTGAGATGAACAGGCCGGAATCATCGTAATCAAACACTGTTCCCACACGGATGAGGAAGACTGTATGCCACACGAGAAGTCTTAGAACATTTATGGAACATTTGCGTTcataaaaaatgtatgtgaaaatatTTCCTGCATTTTCAATAACAGTCTATCTATCACTATAAAGTGTTAGTGCCATCCATTAACATTAGCAAGATAATTTCATATGGATTGATGAAATAATAGATTTGAGGGTGTCAAGGAAGTTCTGCTATTAGCTTCTGCCGTTAATTACAGTAGTGCAAGTTATGGCACTATCAAAGCAAGACGACACAGCCAATGTTGTACTCCCTGGAGAGGAACCCAAAGACGGATTGCCATGTCTTACCCCACCTGTCCAAAGCAAAACATCTACTGGCAGGACTTTGaatgagaaagagatggagaaactgACAGGTGACCAGACTTTGGTGTCTGATTTCAAGCAGATGAAGTTGGAAAAGGAGGCACAGAAAAACTGGGACTTGTTTTACAAAAGGAACACAACAAACTTTTTCAAGGATAGGCATTGGACCACCAGAGAGTTTGAAGAACTGAAAGTGTGCCTTGAGTTTGAAGCCCAGAAGCTGGTCCTGCTTGAAGCTGGCTGTGGGGTTGGGAACTGCATCTTCCCACTACTGGAGGAAGACCTCAACATCTTTGTCTATGCCTGTGACTTCTCACCACGAGCTGTGGAGTTTGTGAAGCAACACTCCCTGTACTGCGCTGAGCGCTGCAGTGCGTTCCAGTGTGACCTGACTAAGGATGACCTGAGGGGTAACGTCCCAGTGGGATGTGTGGATGTGGCCACGCTCATATTCGTCCTCTCAGCCATCCACCCAGACAAGATGCAGCAGGCTCTGGACAACATTTACAGGGTTCTGAAGCCAGGGGGCATCATTCTGTTCAGGGACTATGGCCTGTATGACCACGCCATGATGAGATTTAAGGCTGGAAACAAACTGGGAGAGAACTTCTACGTCAGACAGGATGGTACCAGGTCTTATTTCTTCTCCAAAGAGCTCCTTGCAGACCTGTTCAGAGGGGCGGGTTTCGAGAGTGTAACCAATGAGTACGTGCTACGAGAAACGGTCAATAAGAAGGAGGGGCTTTGTGTGCCCAGGGTGTTCCTTCAAAGCAAGTTCCGAAGGCCAGACCAATTACAGGGCTCCTGAAGTCCCTTTCCTCAACAAATGTTTGAAACCTTCAAAGGCACAAATGGACTGAAACCTTCATATATAAATGGACATCATTGGACAAAAGGCTACACTGCCGTATCGCTGATCAAGTGCTGCTTGTTTGATTATGCCTTTTTATTATTAGaactcagtggtggaaaaagtacccaattgtcatacatgattaaaagtaaagaaaccttaatagaaaatgactcaagtaaaagtcacccactaaaatactacttgagtaaaagtttttttttaaatagtataatcaaaagtaaaagtaaatgctatacattattttaaattccttatattaagcaaaccagaaagCACAATTAGTTTTATTTACTGATAGtcgggcacactccaacacagacataatttacaaacaaagtatTTGTGGTTAGtgaagtctgccagatcagaggcagtagtgatgactgCGCGTTTTTTTGATAAGTACgtaaatttgacaattttcctatcatgctaagcattcaaaatgtaacgagtacttttgattgtcagggaaaatgggagtcaaaagtttttttaaatctttaggaatctttaggaatgtagtgaagtaaaagttgtaaaaaatataaattataaagtacaaatacccccaaaaaactgcttaagtagtacttcaacgTAGTTTTACTTAATTACTTTATGATTACCAATGATAAAACTGTATATGATGGAGAATTTCTTAGAGAGAATGGTTTGGTTGTGTAGTTTCAGAGTTGTTAAAGTTCCAATACTATTTTTTGCTGCCAACTTTTCCAATCATGTAATACATTTTCTTTACCACAAGGGGGCAACAAAatctgtataaaaaaaaattCTAACATCAAGTGCTCCTTGGTTAGTCAAAATAAATATTCATATATTTTATCCTGCTCAA

Function

NR:

description
methyltransferase-like protein 6

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K00599 METTL6; tRNA N(3)-methylcytidine methyltransferase METTL6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593683.2 True 2236 mRNA 0.39 5 22608604 22611971

Neighbor

gene id symbol gene type direction distance location
LOC110514133 LOC106581253 coding downstream 5274 22575947 ~ 22603330 (-)
LOC110505130 NA coding downstream 59712 22547800 ~ 22548892 (-)
LOC110514079 LOC106605359 coding downstream 101926 22499445 ~ 22506678 (-)
snrnp48 LOC106581266 coding downstream 112700 22488821 ~ 22495924 (-)
LOC110513982 LOC106581283 coding downstream 120582 22462380 ~ 22488022 (-)
bmper LOC106581223 coding upstream 6123 22618094 ~ 22641761 (-)
bbs9 bbs9 coding upstream 31870 22643841 ~ 22848755 (-)
trnap-agg-7 NA coding upstream 237253 22849224 ~ 22849295 (-)
LOC110503928 LOC106581194 coding upstream 237534 22849505 ~ 22866403 (-)
LOC110514295 LOC106605350 coding upstream 255644 22867615 ~ 22869747 (-)
G235921 NA non-coding downstream 494 22607877 ~ 22608110 (-)
G235916 NA non-coding downstream 7812 22599830 ~ 22600792 (-)
G235900 NA non-coding downstream 23750 22582825 ~ 22584854 (-)
G235860 NA non-coding downstream 82583 22525403 ~ 22526021 (-)
G235959 NA non-coding upstream 60304 22672275 ~ 22698611 (-)
G235938 NA non-coding upstream 70298 22682269 ~ 22685521 (-)
G235962 NA non-coding upstream 77920 22689891 ~ 22691471 (-)
G236003 NA non-coding upstream 157195 22769166 ~ 22770663 (-)
G236049 NA non-coding upstream 236873 22848844 ~ 22849153 (-)
G235881 NA other downstream 33615 22573833 ~ 22574989 (-)
LOC118946878 NA other downstream 853103 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 865193 21738845 ~ 21743411 (-)
G234621 NA other downstream 1109772 21498408 ~ 21498832 (-)
G234600 NA other downstream 1138659 21469661 ~ 21469945 (-)
G237047 NA other upstream 545138 23157109 ~ 23189031 (-)
LOC110514600 ensa other upstream 1159553 23771511 ~ 23780158 (-)
G237657 LOC106605316 other upstream 1568585 24180556 ~ 24183964 (-)
G237832 NA other upstream 1909248 24521219 ~ 24521544 (-)
LOC110515154 LOC106605289 other upstream 2157591 24767049 ~ 24799511 (-)

Expression


Co-expression Network