LOC110514282 (LOC106581183)


Basic Information

Item Value
gene id LOC110514282
gene name LOC106581183
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22869740 ~ 22893776 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972415.1
AGGCGCCatatttgttgtccttaaagaaAATTTCAGTGGTTTGCAAGCTGTAAATGAAACTACCAATAACTACAAAATTACTTATCGATTGCTAGGCGAATCAAAATTGTCGTCACTAACCAACAACTTTATAGGTTACACCTCGTCGGGGAAAGGGGGATTTCCTTGCTTTTTTTCCTTGATAGACGAATGACAACACCACCACGGCCCTCTTCCTTAATCGCAGCTGGTTACAAACGCTCTAGAAAAGTAGTTTGTAGCTAGAGAATACTTCCTTTATGTGCCACTGGGAGCGACGGGAGGATGGCAGATGACAAGGACGTGCTTCGAGATGTTTGGTTTGGTCGGATTCCGACCTGCTTCACACTTTACCAGGATgagatcacagagagagaggccgaACCCTTCTATCTCCTCCTGCCAAGGATGAGCTACTTGACTCTGGTCACAGACAAGGTGAAAAAGCACTTCCTGAAGGTCATGAAGGCCGAGGACATAGAGGAGATGTGGTTTGATTTCGAGGGAACCTCACTCAAATGGCACTATCCAATCGGATTACTGTTTGACCTGCATGCCTCCAACACTGCCCTGCCCTGGAGCATCACTGTGCACTTTAAGAATTTCCCAGAGCGTGACCTGCTCCACTGCCCCTCTAACTCTGTGATTGAGGCCCACTTCATGTCCAGCATCAAGGAGGCGGATGCCCTCAAACACAAGAGCCAGGTCATCAACGACATGCAGAAGAAAGACCACAAGCAGCTGTGGATGGGCCTGCAGAATGaTAAGTTTGACCAGTTCTGGGCCATGAACCGTAAGCTGATGGAATACCCCACAGAGGAGGGAGGCTTTCGCTACATCCCCTTCAGGATATACCTGACGATGAGTGACAGACCGTTCATCCAGAAGTTGTTTCGCCCCATCTCGCCCgacggccacacacacacgcttgggGACCTGCTGAAGGAGGTGTACCCCGTGGCTATACCCAACGATGACGAGTCCAAGCGTTACCAGGTGGTGATCCATGGGATTGAGCCCCTGCTGGAGACCCCGTTGCAGTGGCTGAGCGAGCACCTCAGTCACCCTGATAACTTCCTCCACATCAGCGTCATACCCGTGCCTAGCGACTGACACCTTTGGCAAAGTTTGGTAACACCCGGCAACTGGGAAAGTTGCAAACTCCGAACGGACTCTTCAGAGAGCAGGAAAACCCACGTGACTGGGGGGCGAGGAGTGACGCAATCGCAGTGTGACGTCATCTCATTCAACTTGTCCCAAAAGGGAGCCCACCAGgagaaaatgtaaaatgttctgttttccatctattttcctctcctccttcgcACTCCGTCTCTTTTGGACCTTTACCTGTTTGGGGAAAGTTGTTCCGCCCAAAATGTGGTAGGCCAAACTGAAAGAGTGCTCATCTGTTTaaaaagagaggcagggagatTCCGCTTACCACCTcctcactcctcttcctcctcctagggaaagagagagggcccAGACATGCCTAGTGGGACCCTCTACAAACAGAATTTGCCTTAGTTTTCCCGAGTCACATCATGAGCTACACTGCTGGACGTTCATAAAGTCACACTGAGTTTACACACTTGTACTGTATGCCACTGTGGAGTGAAAGGGGATTTTTAAAGACGCTTCACTTCTTCATTctttgtctctcgctctgtctgtctgtatattctctatcttcctctctcactGTATTTCCtgtttctttcttctctctcttcctccctccccctctttctctctcgtgtcATTTACTGCCGACGCTCTCTCATCTCCATAGCTAATTATCTTATTGGAATTCCTCCTGCTACTAATGAGACCGCTAAACTTCTGTCTCCATGCCAAGCCTTggggttgtgtgagtgtgtgttgtaaTTGGAGACATAATTTAAAGTCTCCTAGAGGGGACATGGAGGGGGTGAGGAAGGTGTGAAGAGTCCAAATGGAatcctgtctgtcttctctcttgCGTGTCTCGTGTCAAAGGGAGATGGGGCCAGACATGTAATTTGGAGTGTGTTGTTAGTCAAAGGGGAGGGAAACTTGTGATGTCACACCTGTCTAAGCACGTCAGGCTTCCTCATTCGCCGCCTAGGAGGATGGGATAGGGGAGTTTACAGCTCTGAGTCAGGGCTGGGCTCGACGTGGGGTACTGTCTGAGGGGTAGGcatgtgcatacgtgtgtgtatgtacatgtgtgtatgggtactttttgcacattttgttgttacaaagtgggattcagaTGGATTTCATTATCATTGTTGGAAaatgatctacacaaaacacTCTTATGTGGAAGAAAAATTGTAACattaacaaaatacaaaaaaatgtaacaCTACGTATTCTCATCCCTGAGACTACATGTTAGAaaaacctttggcagtgattacagctgtgagtctttttggctaagtctataagagctttgcacacctggattgtacaatatttgcccattaaaaagtcttcaagctctgtcaa
>XM_021593753.2
AGGCGAATCAAAATTGTCGTCACTAACCAACAACTTTATAGGTAATCTTTGCACTGAATACAACCATCTCGACATGATTATTGTAATACACTACAATGAACGCTGGATGCCACTCTATACTGCAGGTTACACCTCGTCGGGGAAAGGGGGATTTCCTTGCTTTTTTTCCTTGATAGACGAATGACAACACCACCACGGCCCTCTTCCTTAATCGCAGCTGGTTACAAACGCTCTAGAAAAGTAGTTTGTAGCTAGAGAATACTTCCTTTATGTGCCACTGGGAGCGACGGGAGGATGGCAGATGACAAGGACGTGCTTCGAGATGTTTGGTTTGGTCGGATTCCGACCTGCTTCACACTTTACCAGGATgagatcacagagagagaggccgaACCCTTCTATCTCCTCCTGCCAAGGATGAGCTACTTGACTCTGGTCACAGACAAGGTGAAAAAGCACTTCCTGAAGGTCATGAAGGCCGAGGACATAGAGGAGATGTGGTTTGATTTCGAGGGAACCTCACTCAAATGGCACTATCCAATCGGATTACTGTTTGACCTGCATGCCTCCAACACTGCCCTGCCCTGGAGCATCACTGTGCACTTTAAGAATTTCCCAGAGCGTGACCTGCTCCACTGCCCCTCTAACTCTGTGATTGAGGCCCACTTCATGTCCAGCATCAAGGAGGCGGATGCCCTCAAACACAAGAGCCAGGTCATCAACGACATGCAGAAGAAAGACCACAAGCAGCTGTGGATGGGCCTGCAGAATGaTAAGTTTGACCAGTTCTGGGCCATGAACCGTAAGCTGATGGAATACCCCACAGAGGAGGGAGGCTTTCGCTACATCCCCTTCAGGATATACCTGACGATGAGTGACAGACCGTTCATCCAGAAGTTGTTTCGCCCCATCTCGCCCgacggccacacacacacgcttgggGACCTGCTGAAGGAGGTGTACCCCGTGGCTATACCCAACGATGACGAGTCCAAGCGTTACCAGGTGGTGATCCATGGGATTGAGCCCCTGCTGGAGACCCCGTTGCAGTGGCTGAGCGAGCACCTCAGTCACCCTGATAACTTCCTCCACATCAGCGTCATACCCGTGCCTAGCGACTGACACCTTTGGCAAAGTTTGGTAACACCCGGCAACTGGGAAAGTTGCAAACTCCGAACGGACTCTTCAGAGAGCAGGAAAACCCACGTGACTGGGGGGCGAGGAGTGACGCAATCGCAGTGTGACGTCATCTCATTCAACTTGTCCCAAAAGGGAGCCCACCAGgagaaaatgtaaaatgttctgttttccatctattttcctctcctccttcgcACTCCGTCTCTTTTGGACCTTTACCTGTTTGGGGAAAGTTGTTCCGCCCAAAATGTGGTAGGCCAAACTGAAAGAGTGCTCATCTGTTTaaaaagagaggcagggagatTCCGCTTACCACCTcctcactcctcttcctcctcctagggaaagagagagggcccAGACATGCCTAGTGGGACCCTCTACAAACAGAATTTGCCTTAGTTTTCCCGAGTCACATCATGAGCTACACTGCTGGACGTTCATAAAGTCACACTGAGTTTACACACTTGTACTGTATGCCACTGTGGAGTGAAAGGGGATTTTTAAAGACGCTTCACTTCTTCATTctttgtctctcgctctgtctgtctgtatattctctatcttcctctctcactGTATTTCCtgtttctttcttctctctcttcctccctccccctctttctctctcgtgtcATTTACTGCCGACGCTCTCTCATCTCCATAGCTAATTATCTTATTGGAATTCCTCCTGCTACTAATGAGACCGCTAAACTTCTGTCTCCATGCCAAGCCTTggggttgtgtgagtgtgtgttgtaaTTGGAGACATAATTTAAAGTCTCCTAGAGGGGACATGGAGGGGGTGAGGAAGGTGTGAAGAGTCCAAATGGAatcctgtctgtcttctctcttgCGTGTCTCGTGTCAAAGGGAGATGGGGCCAGACATGTAATTTGGAGTGTGTTGTTAGTCAAAGGGGAGGGAAACTTGTGATGTCACACCTGTCTAAGCACGTCAGGCTTCCTCATTCGCCGCCTAGGAGGATGGGATAGGGGAGTTTACAGCTCTGAGTCAGGGCTGGGCTCGACGTGGGGTACTGTCTGAGGGGTAGGcatgtgcatacgtgtgtgtatgtacatgtgtgtatgggtactttttgcacattttgttgttacaaagtgggattcagaTGGATTTCATTATCATTGTTGGAAaatgatctacacaaaacacTCTTATGTGGAAGAAAAATTGTAACattaacaaaatacaaaaaaatgtaacaCTACGTATTCTCATCCCTGAGACTACATGTTAGAaaaacctttggcagtgattacagctgtgagtctttttggctaagtctataagagctttgcacacctggattgtacaatatttgcccattaaaaagtcttcaagctctgtcaa

Function

NR:

description
autophagy protein 5-like

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0007399 nervous system development biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K08339 ATG5; autophagy-related protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972415.1 False 2523 mRNA 0.48 9 22869740 22893776
XM_021593753.2 True 2514 mRNA 0.48 8 22869833 22893776

Neighbor

gene id symbol gene type direction distance location
LOC110514168 LOC106581241 coding upstream 251657 22612036 ~ 22618089 (+)
LOC110514114 can7 coding upstream 294630 22557122 ~ 22575110 (+)
LOC110514095 LOC106581260 coding upstream 325641 22513124 ~ 22544099 (+)
LOC118947118 NA coding upstream 383224 22482472 ~ 22488203 (+)
LOC110514034 NA coding upstream 397601 22460524 ~ 22472917 (+)
LOC110514335 LOC106581155 coding downstream 225607 23119383 ~ 23133074 (+)
smarcc1a LOC106605342 coding downstream 316642 23210418 ~ 23227568 (+)
LOC110514420 LOC106581064 coding downstream 342486 23236262 ~ 23290996 (+)
elp6 LOC106581052 coding downstream 408996 23302772 ~ 23306081 (+)
LOC110514448 LOC106581016 coding downstream 412456 23306232 ~ 23342019 (+)
G235704 NA non-coding upstream 20540 22848857 ~ 22849200 (+)
G235619 NA non-coding upstream 110737 22758544 ~ 22759003 (+)
G235580 NA non-coding upstream 134200 22734764 ~ 22735540 (+)
G235569 NA non-coding upstream 184231 22673525 ~ 22685509 (+)
G235678 NA non-coding downstream 1989 22895765 ~ 22896704 (+)
G235685 NA non-coding downstream 9966 22903742 ~ 22904675 (+)
G235733 NA non-coding downstream 30366 22924142 ~ 22924543 (+)
G236118 NA non-coding downstream 57538 22951314 ~ 22951608 (+)
G236121 NA non-coding downstream 62214 22955990 ~ 22956201 (+)
G235571 NA other upstream 170906 22672736 ~ 22698834 (+)
G235426 LOC106581355 other upstream 564834 22303641 ~ 22304906 (+)
LOC110503910 LOC106580557 other upstream 801660 22057484 ~ 22068080 (+)
G236271 LOC106581124 other downstream 255376 23144516 ~ 23191853 (+)
G236301 NA other downstream 305076 23198852 ~ 23199075 (+)
G236370 LOC106581434 other downstream 453104 23346880 ~ 23349378 (+)
G236372 LOC106581434 other downstream 456315 23350091 ~ 23350815 (+)
LOC110514613 hormad1 other downstream 899021 23780400 ~ 23795199 (+)

Expression


Co-expression Network